Wall clock time and date at job start Sat Apr 11 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 C 1.52997 * 109.47164 * 300.00051 * 4 3 2 6 6 C 1.52997 * 109.47127 * 60.00214 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 8 8 N 1.46906 * 109.46904 * 179.97438 * 7 4 3 9 9 C 1.46898 * 110.99895 * 179.97438 * 8 7 4 10 10 C 1.50704 * 109.47048 * 180.02562 * 9 8 7 11 11 O 1.21297 * 119.99522 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99932 * 180.02562 * 10 9 8 13 13 C 1.37103 * 119.99640 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00366 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99566 * 179.97438 * 13 12 10 16 16 N 1.31419 * 119.99617 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00383 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47242 * 89.99771 * 17 15 13 19 19 H 1.48498 * 109.47075 * 210.00086 * 17 15 13 20 20 H 1.48501 * 109.47046 * 329.99716 * 17 15 13 21 21 C 1.34773 * 119.99970 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99889 * 179.97438 * 21 2 1 23 23 C 1.50702 * 120.00140 * 359.97438 * 21 2 1 24 24 H 1.09000 * 115.54582 * 34.34100 * 23 21 2 25 25 C 1.52991 * 117.50079 * 248.62667 * 23 21 2 26 26 C 1.52999 * 60.00376 * 252.51332 * 25 23 21 27 27 C 1.52999 * 117.49920 * 252.51231 * 26 25 23 28 28 C 1.52998 * 117.51862 * 107.48126 * 26 25 23 29 29 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 30 30 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 31 31 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 32 32 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 33 33 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 5 4 3 35 35 H 1.09002 * 109.46777 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47140 * 299.99948 * 5 4 3 37 37 H 1.09004 * 109.47261 * 59.99697 * 6 4 3 38 38 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47289 * 299.99953 * 6 4 3 40 40 H 1.08993 * 109.47839 * 299.99931 * 7 4 3 41 41 H 1.09000 * 109.47160 * 60.00369 * 7 4 3 42 42 H 1.00901 * 110.99687 * 56.05002 * 8 7 4 43 43 H 1.08995 * 109.47632 * 300.00548 * 9 8 7 44 44 H 1.09005 * 109.46845 * 60.01122 * 9 8 7 45 45 H 0.96994 * 120.00389 * 0.02562 * 12 10 9 46 46 H 0.96997 * 119.99727 * 179.97438 * 16 15 13 47 47 H 1.09003 * 117.50119 * 0.02562 * 25 23 21 48 48 H 1.09000 * 117.49985 * 145.02366 * 25 23 21 49 49 H 1.09006 * 109.46803 * 128.61761 * 27 26 25 50 50 H 1.08991 * 109.47164 * 248.61861 * 27 26 25 51 51 H 1.09003 * 109.47230 * 8.62287 * 27 26 25 52 52 H 1.09002 * 109.47046 * 351.37289 * 28 26 25 53 53 H 1.08998 * 109.46811 * 111.37668 * 28 26 25 54 54 H 1.09001 * 109.46876 * 231.37591 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2793 0.6442 -2.1639 6 6 1.1156 1.8934 -2.1637 7 6 3.2169 3.0358 -1.4425 8 7 3.4622 3.4596 -2.8275 9 6 4.1953 4.7320 -2.8666 10 6 4.4275 5.1341 -4.3004 11 8 4.0216 4.4301 -5.2009 12 7 5.0860 6.2758 -4.5818 13 6 5.2967 6.6418 -5.8862 14 1 4.9354 6.0151 -6.6881 15 6 5.9752 7.8192 -6.1764 16 7 6.1776 8.1698 -7.4267 17 14 6.6009 8.9028 -4.7895 18 1 7.9796 8.4908 -4.4228 19 1 6.6094 10.3198 -5.2338 20 1 5.7110 8.7595 -3.6093 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 1 0.4469 -2.4733 -0.5549 25 6 1.4610 -3.3317 1.2630 26 6 2.2076 -3.7627 -0.0010 27 6 1.6492 -4.9558 -0.7792 28 6 3.7318 -3.6292 -0.0019 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 3.1500 1.1384 0.5138 33 1 1.6084 2.0284 0.5138 34 1 2.7343 -0.2998 -2.1639 35 1 3.4612 0.9591 -3.1914 36 1 4.2317 0.5139 -1.6501 37 1 0.5265 2.6531 -1.6498 38 1 1.2972 2.2085 -3.1913 39 1 0.5705 0.9495 -2.1637 40 1 2.6275 3.7952 -0.9288 41 1 4.1693 2.9059 -0.9286 42 1 2.5979 3.5246 -3.3442 43 1 3.6122 5.5030 -2.3632 44 1 5.1545 4.6143 -2.3622 45 1 5.4109 6.8385 -3.8617 46 1 6.6509 8.9918 -7.6292 47 1 2.0554 -2.9529 2.0945 48 1 0.5720 -3.8982 1.5402 49 1 1.5378 -4.6848 -1.8291 50 1 2.3343 -5.7990 -0.6923 51 1 0.6775 -5.2335 -0.3706 52 1 4.0494 -3.0856 0.8879 53 1 4.1833 -4.6213 -0.0023 54 1 4.0483 -3.0856 -0.8921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275661841.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:35 Heat of formation + Delta-G solvation = -66.065950 kcal Electronic energy + Delta-G solvation = -30328.979749 eV Core-core repulsion = 26300.871318 eV Total energy + Delta-G solvation = -4028.108431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56656 -40.36223 -39.38171 -37.83109 -36.44923 -35.94268 -34.31461 -33.72355 -30.49786 -29.09301 -28.86992 -28.32147 -28.14086 -26.96277 -26.55027 -24.93501 -23.63393 -21.33067 -20.87561 -20.37893 -19.70261 -19.39988 -18.09261 -17.84030 -17.31946 -16.84610 -16.75868 -16.62096 -15.82440 -15.58623 -15.37787 -15.15270 -15.01063 -14.79136 -14.62273 -14.43195 -14.30351 -14.19682 -14.08730 -13.86027 -13.65602 -13.48823 -13.28832 -13.23282 -13.00048 -12.88528 -12.76745 -12.67116 -12.48887 -12.42631 -12.36627 -12.10934 -12.01193 -11.93882 -11.64340 -11.55892 -11.52443 -11.13230 -10.74346 -10.45740 -10.34655 -10.26043 -9.51575 -9.26291 -8.42436 -6.03473 1.29062 1.35142 1.43707 1.57124 1.94322 2.07319 2.22172 2.73808 2.83230 3.13717 3.44179 3.56100 3.70911 3.83984 3.87822 3.91080 3.98071 4.15870 4.17400 4.20970 4.38441 4.42489 4.46434 4.48876 4.53574 4.66200 4.68956 4.75308 4.77275 4.81530 4.84256 4.85356 4.87808 4.97630 4.99961 5.08084 5.09464 5.11312 5.12210 5.13435 5.22590 5.32291 5.46504 5.48849 5.52110 5.53240 5.66228 5.90138 6.07515 6.42081 6.48421 6.58912 6.86738 7.31294 7.38427 7.95238 8.75285 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.001891 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.311488 B =14803.900225 C =15068.659689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.608 5.608 3 C 0.131 3.869 4 C -0.069 4.069 5 C -0.106 4.106 6 C -0.143 4.143 7 C 0.074 3.926 8 N -0.686 5.686 9 C 0.062 3.938 10 C 0.448 3.552 11 O -0.615 6.615 12 N -0.591 5.591 13 C -0.329 4.329 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.230 1.230 21 C 0.533 3.467 22 O -0.564 6.564 23 C -0.192 4.192 24 H 0.141 0.859 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.344 0.656 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.088 0.912 48 H 0.130 0.870 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.047 0.953 53 H 0.058 0.942 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 -19.794 26.495 36.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C 0.008 3.992 4 C -0.070 4.070 5 C -0.164 4.164 6 C -0.200 4.200 7 C -0.055 4.055 8 N -0.320 5.320 9 C -0.070 4.070 10 C 0.236 3.764 11 O -0.499 6.499 12 N -0.233 5.233 13 C -0.459 4.459 14 H 0.072 0.928 15 C -0.215 4.215 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.154 1.154 21 C 0.322 3.678 22 O -0.443 6.443 23 C -0.213 4.213 24 H 0.158 0.842 25 C -0.166 4.166 26 C -0.110 4.110 27 C -0.170 4.170 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.148 0.852 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.066 0.934 53 H 0.077 0.923 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.543 -20.494 25.677 35.928 hybrid contribution 0.159 1.609 -0.232 1.633 sum -14.384 -18.885 25.445 34.800 Atomic orbital electron populations 1.22157 0.77496 1.04821 1.02731 1.47779 1.08163 1.05100 1.72894 1.21454 0.97743 0.85161 0.94861 1.20888 0.95709 0.94371 0.96064 1.21499 0.98576 0.96855 0.99420 1.21972 0.95785 1.02490 0.99731 1.21966 0.99958 0.95431 0.88154 1.60052 1.27681 1.29934 1.14307 1.21622 1.01632 0.92268 0.91491 1.21023 0.81487 0.81540 0.92375 1.90542 1.55091 1.54189 1.50117 1.42028 1.52600 1.21824 1.06798 1.19009 1.36073 1.07160 0.83627 0.92787 1.26143 0.96789 0.98407 1.00140 1.69810 1.41972 1.25419 1.20286 0.85342 0.79900 0.77717 0.78416 1.18313 1.19862 1.15353 1.20132 0.87198 0.85359 0.75084 1.90717 1.15388 1.87499 1.50743 1.22451 1.02689 0.89436 1.06708 0.84168 1.23247 1.03143 1.00259 0.89922 1.21667 0.94191 0.94173 1.00970 1.21387 1.01440 0.94942 0.99187 1.21226 0.92526 1.00087 1.01548 0.91961 0.89427 0.89240 0.91522 0.87819 0.94534 0.94406 0.94573 0.90953 0.94131 0.91430 0.92808 0.91014 0.83552 0.90304 0.87234 0.77448 0.91126 0.89355 0.85188 0.92508 0.91375 0.90399 0.93427 0.92346 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.04 127.77 1.15 1.67 16 2 N -0.61 -9.17 2.40 -846.74 -2.03 -11.20 16 3 C 0.13 2.16 4.63 86.38 0.40 2.56 16 4 C -0.07 -1.42 0.67 -52.18 -0.03 -1.46 16 5 C -0.11 -3.00 6.98 71.98 0.50 -2.49 16 6 C -0.14 -2.63 7.55 71.98 0.54 -2.09 16 7 C 0.07 1.63 4.65 86.30 0.40 2.03 16 8 N -0.69 -21.12 5.34 -517.93 -2.76 -23.89 16 9 C 0.06 1.97 6.17 85.56 0.53 2.50 16 10 C 0.45 20.87 7.82 87.66 0.69 21.56 16 11 O -0.61 -35.22 15.78 -3.08 -0.05 -35.26 16 12 N -0.59 -28.55 5.09 -306.97 -1.56 -30.12 16 13 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 14 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 15 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 16 N -0.93 -57.14 13.96 21.66 0.30 -56.84 16 17 Si 0.97 39.37 27.74 68.60 1.90 41.28 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 21 C 0.53 10.53 5.84 87.66 0.51 11.04 16 22 O -0.56 -15.54 10.87 -3.04 -0.03 -15.58 16 23 C -0.19 -2.64 4.52 -11.54 -0.05 -2.69 16 24 H 0.14 1.33 7.26 -2.39 -0.02 1.31 16 25 C -0.13 -1.38 9.52 30.59 0.29 -1.09 16 26 C -0.11 -1.61 2.70 -52.18 -0.14 -1.75 16 27 C -0.11 -1.18 9.85 71.98 0.71 -0.47 16 28 C -0.10 -1.94 8.09 71.98 0.58 -1.36 16 29 H 0.06 0.46 6.26 -2.39 -0.01 0.45 16 30 H 0.09 0.39 6.64 -2.39 -0.02 0.37 16 31 H 0.09 0.38 7.89 -2.39 -0.02 0.36 16 32 H 0.07 1.37 7.42 -2.39 -0.02 1.35 16 33 H 0.10 1.11 7.89 -2.39 -0.02 1.09 16 34 H 0.04 1.03 6.14 -2.39 -0.01 1.01 16 35 H 0.04 1.26 7.60 -2.39 -0.02 1.24 16 36 H 0.04 1.14 7.73 -2.39 -0.02 1.12 16 37 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.04 0.96 6.57 -2.39 -0.02 0.95 16 39 H 0.07 1.11 5.33 -2.39 -0.01 1.10 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.34 11.23 6.47 -89.69 -0.58 10.65 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 45 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 46 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 48 H 0.13 0.68 8.05 -2.39 -0.02 0.66 16 49 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 51 H 0.08 0.51 7.90 -2.39 -0.02 0.49 16 52 H 0.05 1.08 7.02 -2.39 -0.02 1.07 16 53 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 54 H 0.04 1.04 7.26 -2.39 -0.02 1.03 16 Total: -1.00 -82.94 413.24 2.89 -80.04 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.27 Total: 42.92 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 7.40 Total: 8.64 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.06 Total: -122.04 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.08 Total: -50.84 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.28 kcal Total: -82.94 2.89 -80.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275661841.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.979 kcal (2) G-P(sol) polarization free energy of solvation -82.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds