Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 C 1.53006 * 109.47292 * 240.00398 * 2 1 3 5 5 C 1.50699 * 109.47546 * 120.00293 * 2 1 3 6 6 O 1.21284 * 119.99403 * 0.02562 * 5 2 1 7 7 N 1.34767 * 120.00254 * 180.02562 * 5 2 1 8 8 C 1.46507 * 120.00049 * 180.02562 * 7 5 2 9 9 C 1.50698 * 109.47156 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00081 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99857 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99846 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47138 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.52694 * 59.91543 * 13 12 11 15 15 C 1.53037 * 109.49871 * 179.97438 * 13 12 11 16 16 C 1.53043 * 109.53867 * 181.31435 * 15 13 12 17 17 C 1.53189 * 109.31285 * 298.63220 * 16 15 13 18 18 N 1.46926 * 108.77102 * 54.63405 * 17 16 15 19 19 C 1.36943 * 120.62897 * 126.37356 * 18 17 16 20 20 H 1.08003 * 119.99925 * 331.82261 * 19 18 17 21 21 C 1.38812 * 120.00214 * 151.82712 * 19 18 17 22 22 N 1.31618 * 119.99806 * 343.08278 * 21 19 18 23 23 Si 1.86805 * 119.99880 * 163.08345 * 21 19 18 24 24 H 1.48493 * 109.47197 * 90.00044 * 23 21 19 25 25 H 1.48504 * 109.46753 * 209.99972 * 23 21 19 26 26 H 1.48502 * 109.47173 * 329.99633 * 23 21 19 27 27 C 1.46923 * 118.74330 * 306.38990 * 18 17 16 28 28 H 1.08999 * 109.47212 * 299.99723 * 1 2 3 29 29 H 1.09006 * 109.47282 * 59.99923 * 1 2 3 30 30 H 1.08996 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47392 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47401 * 299.99710 * 3 2 1 33 33 H 1.08999 * 109.46955 * 60.00119 * 3 2 1 34 34 H 1.08996 * 109.47164 * 299.99744 * 4 2 1 35 35 H 1.09004 * 109.46726 * 59.99793 * 4 2 1 36 36 H 1.08997 * 109.47022 * 179.97438 * 4 2 1 37 37 H 0.97001 * 120.00570 * 359.97438 * 7 5 2 38 38 H 1.08996 * 109.47291 * 59.99730 * 8 7 5 39 39 H 1.08999 * 109.46779 * 299.99614 * 8 7 5 40 40 H 0.96998 * 119.99774 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47660 * 59.99709 * 12 11 9 42 42 H 1.09008 * 109.46899 * 299.99388 * 12 11 9 43 43 H 1.08992 * 109.47627 * 180.08298 * 14 13 12 44 44 H 1.09007 * 109.47062 * 300.08790 * 14 13 12 45 45 H 1.09000 * 109.47185 * 60.07962 * 14 13 12 46 46 H 1.08996 * 109.46472 * 61.29177 * 15 13 12 47 47 H 1.09003 * 109.45789 * 301.33505 * 15 13 12 48 48 H 1.09001 * 109.49506 * 58.58565 * 16 15 13 49 49 H 1.08999 * 109.49946 * 178.67653 * 16 15 13 50 50 H 1.09001 * 109.58527 * 174.41952 * 17 16 15 51 51 H 1.08989 * 109.58863 * 294.84811 * 17 16 15 52 52 H 0.97001 * 119.99503 * 180.02562 * 22 21 19 53 53 H 1.09004 * 109.58870 * 173.40206 * 27 18 17 54 54 H 1.09001 * 109.58409 * 293.68111 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2442 -1.1718 2.0285 7 7 3.3574 -0.8331 1.4439 8 6 3.8458 -1.5243 2.6398 9 6 5.3528 -1.5231 2.6404 10 8 5.9592 -0.9971 1.7313 11 7 6.0267 -2.1074 3.6508 12 6 7.4917 -2.1067 3.6512 13 6 8.0017 -2.8284 4.9001 14 6 7.4914 -4.2707 4.9016 15 6 9.5321 -2.8286 4.9008 16 6 10.0433 -3.5788 6.1329 17 6 9.5594 -2.8637 7.3984 18 7 8.0975 -2.7305 7.3364 19 6 7.3117 -3.1812 8.3634 20 1 7.6473 -4.0020 8.9800 21 6 6.0838 -2.5834 8.6118 22 7 5.8136 -1.3996 8.1040 23 14 4.8150 -3.4591 9.6667 24 1 5.0076 -3.0801 11.0895 25 1 3.4514 -3.0655 9.2298 26 1 4.9773 -4.9278 9.5193 27 6 7.4946 -2.1049 6.1516 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7488 -1.2494 35 1 1.6766 -0.2072 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.9878 -0.4645 0.8054 38 1 3.4829 -2.5521 2.6391 39 1 3.4821 -1.0111 3.5299 40 1 5.5417 -2.5283 4.3777 41 1 7.8546 -1.0789 3.6523 42 1 7.8554 -2.6196 2.7607 43 1 7.8540 -4.7836 5.7923 44 1 6.4013 -4.2705 4.9008 45 1 7.8551 -4.7857 4.0124 46 1 9.8954 -1.8012 4.9246 47 1 9.8955 -3.3212 3.9990 48 1 9.6601 -4.5991 6.1225 49 1 11.1330 -3.5988 6.1205 50 1 9.8363 -3.4474 8.2763 51 1 10.0143 -1.8750 7.4560 52 1 4.9556 -0.9817 8.2779 53 1 6.4092 -2.1877 6.2070 54 1 7.7792 -1.0535 6.1089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278685970.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -95.455811 kcal Electronic energy + Delta-G solvation = -31055.854325 eV Core-core repulsion = 27026.471454 eV Total energy + Delta-G solvation = -4029.382871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56495 -40.81365 -39.77011 -36.65689 -36.43292 -35.54751 -34.91890 -33.04610 -31.64253 -29.64323 -28.23853 -28.03683 -27.87386 -27.22567 -26.47211 -24.00204 -23.61613 -22.15914 -21.56797 -20.67448 -19.56905 -18.52229 -18.33903 -17.66398 -17.29691 -17.07340 -16.76237 -16.39935 -16.10462 -15.74910 -15.44222 -15.25153 -15.23469 -14.82509 -14.74157 -14.66495 -14.34026 -14.26313 -13.92962 -13.77065 -13.50759 -13.32704 -13.09214 -13.04922 -13.01363 -12.90564 -12.71446 -12.63821 -12.56458 -12.28632 -12.14539 -11.92208 -11.87789 -11.85318 -11.71643 -11.39749 -11.31678 -11.01356 -10.95939 -10.80899 -10.50742 -10.32326 -10.07969 -8.60780 -7.84014 -5.28215 1.42622 1.46165 1.50206 1.55777 1.57560 1.75423 2.42740 2.52677 3.29307 3.50802 3.59343 3.66750 3.82889 3.90858 3.95892 4.04966 4.05561 4.20915 4.23643 4.34981 4.38220 4.52307 4.56405 4.70279 4.71288 4.74590 4.76223 4.81711 4.82185 4.93260 4.94147 4.99739 5.00538 5.05689 5.13063 5.14979 5.19053 5.23976 5.28035 5.31619 5.32906 5.35780 5.41737 5.47449 5.51703 5.64182 5.73805 5.80270 6.38173 6.42364 6.42602 7.02168 7.12323 7.19320 7.90586 8.42468 9.20877 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002840 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.217856 B = 9856.814851 C =11492.165136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.517 3.483 6 O -0.581 6.581 7 N -0.709 5.709 8 C 0.100 3.900 9 C 0.514 3.486 10 O -0.570 6.570 11 N -0.710 5.710 12 C 0.143 3.857 13 C -0.091 4.091 14 C -0.120 4.120 15 C -0.094 4.094 16 C -0.124 4.124 17 C 0.136 3.864 18 N -0.605 5.605 19 C -0.253 4.253 20 H 0.063 0.937 21 C -0.043 4.043 22 N -0.930 5.930 23 Si 0.954 3.046 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.196 3.804 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.416 0.584 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.409 0.591 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.050 0.950 51 H 0.007 0.993 52 H 0.248 0.752 53 H 0.064 0.936 54 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 0.035 -19.158 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.461 6.461 7 N -0.364 5.364 8 C -0.028 4.028 9 C 0.301 3.699 10 O -0.450 6.450 11 N -0.361 5.361 12 C 0.019 3.981 13 C -0.093 4.093 14 C -0.177 4.177 15 C -0.132 4.132 16 C -0.163 4.163 17 C 0.010 3.990 18 N -0.327 5.327 19 C -0.384 4.384 20 H 0.080 0.920 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.070 3.930 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.025 0.975 52 H 0.057 0.943 53 H 0.083 0.917 54 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -2.485 0.147 -19.167 19.328 hybrid contribution -0.680 -0.062 1.490 1.639 sum -3.165 0.085 -17.677 17.958 Atomic orbital electron populations 1.21673 0.91713 1.02293 1.02661 1.20872 0.98122 0.97086 0.92346 1.21904 1.01633 0.92590 1.03644 1.21891 1.01654 1.00280 0.95740 1.21346 0.81273 0.78829 0.88043 1.90693 1.56232 1.50439 1.48692 1.45721 1.07679 1.58283 1.24682 1.21032 0.90345 1.00686 0.90708 1.20533 0.89945 0.77651 0.81802 1.90639 1.70517 1.46739 1.37102 1.46010 1.08207 1.57160 1.24686 1.21333 0.78623 1.00135 0.97980 1.21343 0.97011 0.96659 0.94283 1.21651 0.99794 0.94700 1.01577 1.21373 0.92937 1.00315 0.98621 1.21923 1.00187 0.99503 0.94644 1.21102 0.84190 0.96632 0.97030 1.44233 1.00928 1.70437 1.17149 1.19404 0.99694 1.10234 1.09035 0.91968 1.25613 1.01653 0.95813 1.00761 1.70171 1.22980 1.14577 1.49857 0.85480 0.78873 0.78827 0.78485 1.21840 1.22040 1.19527 1.20574 0.97852 0.90942 0.83668 0.93445 0.89199 0.93102 0.91708 0.88777 0.93050 0.92628 0.88877 0.91627 0.74470 0.87435 0.88740 0.75463 0.92902 0.90282 0.92718 0.94074 0.91700 0.92980 0.90155 0.91755 0.90258 0.93178 0.97517 0.94302 0.91727 0.99991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.76 71.98 0.56 -1.58 16 2 C -0.08 -1.40 0.87 -52.93 -0.05 -1.44 16 3 C -0.14 -1.97 8.37 71.98 0.60 -1.36 16 4 C -0.14 -1.77 8.37 71.98 0.60 -1.17 16 5 C 0.52 13.04 6.48 87.66 0.57 13.61 16 6 O -0.58 -19.34 15.98 -3.04 -0.05 -19.39 16 7 N -0.71 -16.91 5.31 -466.79 -2.48 -19.39 16 8 C 0.10 2.58 6.15 85.63 0.53 3.11 16 9 C 0.51 14.76 7.90 87.66 0.69 15.45 16 10 O -0.57 -18.39 15.67 -3.03 -0.05 -18.44 16 11 N -0.71 -20.86 5.00 -463.06 -2.31 -23.17 16 12 C 0.14 4.26 4.57 86.38 0.39 4.65 16 13 C -0.09 -2.94 0.53 -52.11 -0.03 -2.97 16 14 C -0.12 -3.67 7.81 71.98 0.56 -3.11 16 15 C -0.09 -2.71 4.71 30.62 0.14 -2.56 16 16 C -0.12 -3.71 5.74 30.67 0.18 -3.53 16 17 C 0.14 5.34 6.52 86.36 0.56 5.90 16 18 N -0.60 -28.36 2.43 -699.11 -1.70 -30.06 16 19 C -0.25 -13.21 9.58 84.03 0.81 -12.41 16 20 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 21 C -0.04 -2.28 4.92 84.86 0.42 -1.86 16 22 N -0.93 -52.45 11.20 21.65 0.24 -52.21 16 23 Si 0.95 43.55 29.59 68.60 2.03 45.58 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.20 8.56 3.72 86.36 0.32 8.88 16 28 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 0.97 8.10 -2.39 -0.02 0.96 16 31 H 0.06 0.89 7.56 -2.38 -0.02 0.87 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.81 7.57 -2.39 -0.02 0.79 16 37 H 0.42 9.05 6.27 -92.71 -0.58 8.47 16 38 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.41 12.35 6.22 -92.71 -0.58 11.77 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.05 1.89 5.97 -2.39 -0.01 1.88 16 44 H 0.04 1.27 6.86 -2.38 -0.02 1.26 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.94 6.33 -2.39 -0.02 1.92 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 51 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 52 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 53 H 0.06 3.12 4.97 -2.39 -0.01 3.11 16 54 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: -1.00 -66.97 414.71 2.27 -64.70 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.27 Total: 32.78 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.86 Total: 19.61 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.25 Total: -124.83 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.10 Total: -37.83 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -66.97 2.27 -64.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278685970.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.760 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds