Wall clock time and date at job start Sat Apr 11 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99674 * 2 1 4 4 C 1.34766 * 120.00155 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00310 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00185 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46940 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46753 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47009 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99929 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99815 * 180.27731 * 9 8 7 12 12 C 1.46494 * 119.99885 * 179.72869 * 11 9 8 13 13 C 1.53004 * 109.47294 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.49371 * 59.93367 * 13 12 11 15 15 C 1.53037 * 109.49866 * 179.97438 * 13 12 11 16 16 C 1.53038 * 109.53671 * 181.31701 * 15 13 12 17 17 C 1.53191 * 109.31491 * 298.63341 * 16 15 13 18 18 N 1.46931 * 108.77150 * 54.63614 * 17 16 15 19 19 C 1.36938 * 120.63066 * 126.39041 * 18 17 16 20 20 H 1.08004 * 119.99689 * 331.82775 * 19 18 17 21 21 C 1.38814 * 120.00020 * 151.82028 * 19 18 17 22 22 N 1.31623 * 119.99801 * 343.08582 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 163.08423 * 21 19 18 24 24 H 1.48509 * 109.47074 * 60.00170 * 23 21 19 25 25 H 1.48500 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47038 * 300.00222 * 23 21 19 27 27 C 1.46926 * 118.74063 * 306.39290 * 18 17 16 28 28 H 1.09002 * 109.46642 * 270.00388 * 1 2 3 29 29 H 1.09001 * 109.47070 * 29.99728 * 1 2 3 30 30 H 1.08991 * 109.47272 * 150.00310 * 1 2 3 31 31 H 1.09004 * 109.46908 * 239.99885 * 3 2 1 32 32 H 1.08998 * 109.47237 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.46859 * 120.00886 * 3 2 1 34 34 H 1.08996 * 109.47292 * 59.99942 * 6 4 2 35 35 H 1.08997 * 109.47009 * 299.99734 * 6 4 2 36 36 H 1.09001 * 109.47440 * 60.00549 * 7 6 4 37 37 H 1.08997 * 109.47463 * 299.99367 * 7 6 4 38 38 H 1.09002 * 109.46940 * 60.00490 * 8 7 6 39 39 H 1.08997 * 109.47324 * 299.99800 * 8 7 6 40 40 H 0.96999 * 120.00177 * 359.72088 * 11 9 8 41 41 H 1.09009 * 109.47354 * 299.99845 * 12 11 9 42 42 H 1.08999 * 109.47621 * 59.99942 * 12 11 9 43 43 H 1.09002 * 109.47873 * 60.00346 * 14 13 12 44 44 H 1.09001 * 109.47125 * 179.97438 * 14 13 12 45 45 H 1.08997 * 109.47496 * 299.99973 * 14 13 12 46 46 H 1.09007 * 109.46242 * 301.34240 * 15 13 12 47 47 H 1.09002 * 109.46135 * 61.29422 * 15 13 12 48 48 H 1.08997 * 109.49682 * 58.59311 * 16 15 13 49 49 H 1.09003 * 109.49345 * 178.68288 * 16 15 13 50 50 H 1.09000 * 109.58764 * 174.42426 * 17 16 15 51 51 H 1.09000 * 109.58957 * 294.84984 * 17 16 15 52 52 H 0.96998 * 119.99267 * 179.97438 * 22 21 19 53 53 H 1.09007 * 109.58178 * 293.82539 * 27 18 17 54 54 H 1.08994 * 109.59043 * 173.39638 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1559 -2.6096 -0.0023 8 6 5.6859 -2.6096 -0.0035 9 6 6.1883 -4.0304 -0.0040 10 8 5.4001 -4.9523 -0.0039 11 7 7.5134 -4.2767 0.0005 12 6 8.0017 -5.6578 0.0060 13 6 9.5317 -5.6578 0.0098 14 6 10.0392 -4.9314 1.2570 15 6 10.0425 -7.1004 0.0162 16 6 11.5724 -7.1015 0.0532 17 6 12.1100 -6.4038 -1.2003 18 7 11.5095 -5.0659 -1.2910 19 6 12.2987 -3.9540 -1.4170 20 1 13.3003 -3.9541 -1.0127 21 6 11.8117 -2.8268 -2.0644 22 7 10.7504 -2.9190 -2.8375 23 14 12.6623 -1.1792 -1.8384 24 1 14.0690 -1.2804 -2.3037 25 1 11.9528 -0.1429 -2.6307 26 1 12.6420 -0.8046 -0.4015 27 6 10.0461 -4.9437 -1.2440 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5137 31 1 2.8242 1.3266 -0.8900 32 1 1.4891 2.0973 0.0005 33 1 2.8242 1.3265 0.8899 34 1 4.0096 -0.6535 0.8888 35 1 4.0089 -0.6531 -0.8911 36 1 3.7923 -3.1229 -0.8925 37 1 3.7930 -3.1240 0.8875 38 1 6.0499 -2.0963 0.8865 39 1 6.0485 -2.0953 -0.8935 40 1 8.1437 -3.5394 0.0001 41 1 7.6358 -6.1691 0.8966 42 1 7.6410 -6.1744 -0.8834 43 1 9.6740 -5.4413 2.1485 44 1 11.1292 -4.9320 1.2596 45 1 9.6761 -3.9037 1.2519 46 1 9.6576 -7.6181 0.8949 47 1 9.7006 -7.6107 -0.8842 48 1 11.9153 -6.5699 0.9408 49 1 11.9349 -8.1291 0.0813 50 1 13.1941 -6.3139 -1.1319 51 1 11.8445 -6.9842 -2.0838 52 1 10.4099 -2.1313 -3.2895 53 1 9.6122 -5.4052 -2.1312 54 1 9.7684 -3.8905 -1.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278686186.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:00 Heat of formation + Delta-G solvation = -90.901331 kcal Electronic energy + Delta-G solvation = -30450.876504 eV Core-core repulsion = 26421.691129 eV Total energy + Delta-G solvation = -4029.185374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12668 -40.77900 -39.75845 -36.59562 -36.32052 -35.25612 -34.85267 -32.95978 -31.62489 -30.42814 -28.61107 -27.93187 -27.35489 -27.04812 -26.19015 -23.94197 -23.18244 -21.99026 -21.18258 -20.20517 -19.53476 -18.49719 -18.17231 -17.74987 -17.34575 -16.95469 -16.87230 -16.59082 -16.46687 -15.77676 -15.53622 -15.35202 -14.95823 -14.92264 -14.69784 -14.36066 -14.26230 -14.06645 -13.77350 -13.70926 -13.51070 -13.46994 -13.13966 -13.06759 -12.98967 -12.76494 -12.73702 -12.64944 -12.52993 -12.37028 -12.24872 -12.13892 -11.82763 -11.72758 -11.70503 -11.39329 -11.22138 -10.97557 -10.94994 -10.72903 -10.46668 -9.98378 -9.68278 -8.58328 -7.79277 -5.24873 1.52898 1.53988 1.60523 1.61054 1.71826 2.04323 2.38814 2.57258 3.32704 3.57329 3.63649 3.79122 3.97979 4.04077 4.05886 4.06686 4.07932 4.30271 4.37218 4.39126 4.49989 4.52003 4.54948 4.58234 4.61967 4.67070 4.72488 4.76566 4.80295 4.81247 4.83963 4.89983 4.99985 5.01416 5.06433 5.13455 5.15901 5.18780 5.31659 5.34729 5.37793 5.42963 5.50228 5.53659 5.58733 5.66602 5.75678 5.81064 6.33729 6.46257 6.62024 7.16177 7.22390 7.31187 7.92556 8.46349 9.26084 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.002490 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.538535 B =11241.307765 C =13050.778835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.626 5.626 3 C 0.070 3.930 4 C 0.499 3.501 5 O -0.594 6.594 6 C -0.129 4.129 7 C -0.081 4.081 8 C -0.132 4.132 9 C 0.503 3.497 10 O -0.593 6.593 11 N -0.716 5.716 12 C 0.142 3.858 13 C -0.091 4.091 14 C -0.118 4.118 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.603 5.603 19 C -0.258 4.258 20 H 0.062 0.938 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.197 3.803 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.409 0.591 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.051 0.949 51 H 0.005 0.995 52 H 0.250 0.750 53 H -0.022 1.022 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 9.140 9.407 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.071 4.071 4 C 0.289 3.711 5 O -0.475 6.475 6 C -0.168 4.168 7 C -0.120 4.120 8 C -0.171 4.171 9 C 0.292 3.708 10 O -0.474 6.474 11 N -0.368 5.368 12 C 0.017 3.983 13 C -0.093 4.093 14 C -0.175 4.175 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.326 5.326 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.200 1.200 27 C 0.071 3.929 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.246 0.754 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.023 0.977 52 H 0.059 0.941 53 H -0.004 1.004 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.085 8.098 9.302 17.982 hybrid contribution 0.536 0.799 -0.656 1.164 sum -12.549 8.898 8.647 17.647 Atomic orbital electron populations 1.21759 0.79062 1.03335 1.02150 1.48003 1.07701 1.07182 1.73032 1.22125 0.98011 0.83627 1.03354 1.21346 0.91744 0.82984 0.74989 1.90704 1.71685 1.33180 1.51886 1.21708 0.89635 0.98316 1.07120 1.20913 0.93106 0.95785 1.02183 1.21705 0.96393 0.92050 1.06993 1.21377 0.81826 0.92900 0.74741 1.90671 1.56347 1.48322 1.52091 1.46124 1.07128 1.09437 1.74079 1.21218 0.93454 0.82994 1.00614 1.21339 0.92196 0.97543 0.98192 1.21629 1.01484 0.98987 0.95393 1.21382 0.96143 0.94412 1.01480 1.21920 0.95298 1.00323 0.98631 1.21096 0.96532 0.86129 0.95198 1.44220 1.01975 1.01482 1.84944 1.19395 0.98242 0.91987 1.29207 0.92008 1.25682 0.99451 1.02060 0.96725 1.70194 1.27213 1.28861 1.31402 0.85449 0.77714 0.80117 0.77742 1.21206 1.21949 1.19989 1.20558 0.82671 0.98980 0.90642 0.92434 0.88213 0.93107 0.90690 0.88416 0.90394 0.85484 0.86131 0.93847 0.93069 0.85514 0.86821 0.75412 0.91397 0.94009 0.92093 0.92552 0.93651 0.90564 0.93375 0.91576 0.90379 0.92997 0.97742 0.94094 1.00395 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.41 127.77 1.33 2.44 16 2 N -0.63 -9.71 3.27 -871.89 -2.85 -12.56 16 3 C 0.07 0.43 9.74 127.77 1.24 1.68 16 4 C 0.50 11.36 7.67 87.66 0.67 12.03 16 5 O -0.59 -20.03 15.56 -3.03 -0.05 -20.07 16 6 C -0.13 -2.09 4.52 29.85 0.13 -1.95 16 7 C -0.08 -2.02 3.79 30.60 0.12 -1.90 16 8 C -0.13 -2.89 5.70 29.85 0.17 -2.72 16 9 C 0.50 16.12 7.83 87.66 0.69 16.81 16 10 O -0.59 -24.13 15.98 -3.04 -0.05 -24.18 16 11 N -0.72 -22.62 5.00 -463.05 -2.31 -24.93 16 12 C 0.14 4.76 4.57 86.38 0.39 5.15 16 13 C -0.09 -3.12 0.53 -52.11 -0.03 -3.15 16 14 C -0.12 -3.72 7.81 71.98 0.56 -3.16 16 15 C -0.10 -2.99 4.71 30.62 0.14 -2.85 16 16 C -0.12 -3.86 5.74 30.67 0.18 -3.68 16 17 C 0.14 5.46 6.52 86.36 0.56 6.03 16 18 N -0.60 -28.52 2.43 -699.09 -1.70 -30.22 16 19 C -0.26 -13.34 9.58 84.03 0.81 -12.53 16 20 H 0.06 3.16 7.89 -2.91 -0.02 3.13 16 21 C -0.04 -2.27 4.92 84.86 0.42 -1.85 16 22 N -0.93 -51.35 11.20 21.65 0.24 -51.11 16 23 Si 0.96 41.78 29.59 68.60 2.03 43.81 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.20 8.83 3.72 86.36 0.32 9.15 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.73 7.92 -2.39 -0.02 0.71 16 30 H 0.05 0.98 7.42 -2.39 -0.02 0.96 16 31 H 0.07 0.35 7.85 -2.38 -0.02 0.33 16 32 H 0.10 0.22 7.79 -2.39 -0.02 0.21 16 33 H 0.08 0.30 7.85 -2.39 -0.02 0.28 16 34 H 0.13 1.25 7.87 -2.39 -0.02 1.23 16 35 H 0.12 1.38 7.86 -2.39 -0.02 1.36 16 36 H 0.04 1.35 8.06 -2.39 -0.02 1.33 16 37 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.41 12.37 6.22 -92.71 -0.58 11.79 16 41 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.97 5.97 -2.39 -0.01 1.96 16 45 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 46 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 2.06 6.33 -2.39 -0.02 2.04 16 49 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 51 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 52 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 53 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 54 H 0.07 3.37 4.97 -2.39 -0.01 3.36 16 Total: -1.00 -76.70 416.84 3.31 -73.39 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.29 Total: 26.39 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 7.71 Total: 19.50 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -6.63 Total: -118.82 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.10 Total: -44.26 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -76.70 3.31 -73.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278686186.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.514 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds