Wall clock time and date at job start Sat Apr 11 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47258 * 2 1 4 4 C 1.47020 * 110.99926 * 287.66290 * 3 2 1 5 5 C 1.53102 * 109.25872 * 177.60588 * 4 3 2 6 6 O 1.43009 * 109.25678 * 56.84597 * 5 4 3 7 7 C 1.43014 * 113.74315 * 301.32800 * 6 5 4 8 8 C 1.47008 * 111.00487 * 164.02699 * 3 2 1 9 9 H 1.08993 * 109.54481 * 62.42992 * 8 3 2 10 10 C 1.50707 * 109.50417 * 302.32537 * 8 3 2 11 11 O 1.21277 * 120.00195 * 332.78700 * 10 8 3 12 12 N 1.34774 * 119.99942 * 152.78489 * 10 8 3 13 13 C 1.46924 * 120.63325 * 184.64649 * 12 10 8 14 14 C 1.53198 * 108.77659 * 233.63183 * 13 12 10 15 15 C 1.53044 * 109.30968 * 305.35988 * 14 13 12 16 16 C 1.52996 * 109.45764 * 181.38535 * 15 14 13 17 17 C 1.53001 * 109.47047 * 61.01663 * 16 15 14 18 18 N 1.46497 * 109.46023 * 301.36239 * 15 14 13 19 19 C 1.36936 * 119.99503 * 180.80797 * 18 15 14 20 20 H 1.07997 * 120.00485 * 354.48064 * 19 18 15 21 21 C 1.38817 * 119.99785 * 174.47801 * 19 18 15 22 22 N 1.31615 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00118 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46747 * 60.00110 * 23 21 19 25 25 H 1.48504 * 109.47268 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47344 * 300.00638 * 23 21 19 27 27 C 1.53046 * 109.52505 * 61.37554 * 15 14 13 28 28 C 1.46933 * 120.63142 * 4.66974 * 12 10 8 29 29 H 1.09002 * 109.47084 * 60.00468 * 1 2 3 30 30 H 1.09008 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47276 * 300.00279 * 1 2 3 32 32 H 1.09000 * 109.47719 * 240.00004 * 2 1 3 33 33 H 1.09002 * 109.47084 * 119.99531 * 2 1 3 34 34 H 1.09003 * 109.50589 * 57.66733 * 4 3 2 35 35 H 1.08994 * 109.53904 * 297.56217 * 4 3 2 36 36 H 1.09000 * 109.50385 * 296.91035 * 5 4 3 37 37 H 1.08992 * 109.54001 * 176.80502 * 5 4 3 38 38 H 1.09003 * 109.50623 * 298.74138 * 7 6 5 39 39 H 1.09004 * 109.51077 * 178.60597 * 7 6 5 40 40 H 1.09001 * 109.58758 * 113.84187 * 13 12 10 41 41 H 1.09004 * 109.58326 * 353.41641 * 13 12 10 42 42 H 1.08995 * 109.49540 * 185.41178 * 14 13 12 43 43 H 1.08998 * 109.49399 * 65.31242 * 14 13 12 44 44 H 1.08999 * 109.47146 * 301.01908 * 16 15 14 45 45 H 1.08998 * 109.47328 * 181.02106 * 16 15 14 46 46 H 1.09003 * 109.46972 * 174.17386 * 17 16 15 47 47 H 1.08994 * 109.47278 * 294.17845 * 17 16 15 48 48 H 1.08999 * 109.46851 * 54.18212 * 17 16 15 49 49 H 0.96996 * 120.00592 * 0.79943 * 18 15 14 50 50 H 0.97005 * 119.99696 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.49540 * 58.57607 * 27 15 14 52 52 H 1.08998 * 109.49464 * 178.67677 * 27 15 14 53 53 H 1.09002 * 109.58197 * 246.15696 * 28 12 10 54 54 H 1.08999 * 109.58167 * 6.57865 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8027 2.0205 -1.3079 5 6 2.2713 3.4767 -1.2457 6 8 3.6442 3.5137 -0.8468 7 6 3.8915 2.9039 0.4230 8 6 3.4393 1.4420 0.3777 9 1 4.0341 0.8995 -0.3571 10 6 3.6241 0.8157 1.7359 11 8 2.7100 0.8153 2.5330 12 7 4.8053 0.2562 2.0649 13 6 4.9700 -0.4471 3.3443 14 6 6.1764 0.1444 4.0804 15 6 7.4041 0.0860 3.1684 16 6 8.6187 0.6442 3.9126 17 6 8.8911 -0.2065 5.1548 18 7 7.6624 -1.3045 2.7862 19 6 8.7280 -1.6064 1.9809 20 1 9.3249 -0.8135 1.5551 21 6 9.0411 -2.9318 1.7120 22 7 8.3134 -3.8981 2.2306 23 14 10.4942 -3.3438 0.6129 24 1 11.7381 -2.7955 1.2108 25 1 10.6147 -4.8183 0.4835 26 1 10.2848 -2.7450 -0.7298 27 6 7.1480 0.9211 1.9117 28 6 5.9529 0.3382 1.1510 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7417 1.9899 -1.5559 35 1 2.3703 1.4877 -2.0707 36 1 1.6670 4.0229 -0.5214 37 1 2.1653 3.9361 -2.2283 38 1 3.3343 3.4335 1.1958 39 1 4.9574 2.9484 0.6467 40 1 5.1390 -1.5079 3.1592 41 1 4.0731 -0.3181 3.9502 42 1 6.3681 -0.4312 4.9859 43 1 5.9686 1.1812 4.3448 44 1 8.4195 1.6728 4.2132 45 1 9.4893 0.6195 3.2572 46 1 9.8151 0.1264 5.6277 47 1 8.0644 -0.0994 5.8569 48 1 8.9881 -1.2526 4.8645 49 1 7.0788 -2.0112 3.1037 50 1 8.5324 -4.8243 2.0430 51 1 6.9310 1.9505 2.1969 52 1 8.0314 0.8982 1.2736 53 1 6.2020 -0.6586 0.7870 54 1 5.7044 0.9852 0.3097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281021207.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:05 Heat of formation + Delta-G solvation = -72.770550 kcal Electronic energy + Delta-G solvation = -32701.466405 eV Core-core repulsion = 28673.067241 eV Total energy + Delta-G solvation = -4028.399164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92346 -40.39321 -39.15419 -37.10518 -36.20378 -34.47301 -33.21840 -32.01337 -31.86465 -31.42391 -30.69048 -27.75117 -26.71617 -25.66714 -25.58848 -24.08888 -23.11908 -22.92464 -21.86449 -20.53369 -19.51346 -18.88938 -18.44545 -17.76377 -17.51836 -16.69616 -16.54339 -16.26060 -16.08357 -15.83519 -15.58776 -15.43915 -15.25329 -15.22667 -15.09008 -14.92943 -14.36890 -14.10999 -13.99946 -13.88731 -13.46465 -13.22170 -13.03541 -12.91185 -12.84696 -12.77851 -12.73407 -12.58397 -12.40286 -12.27974 -12.19667 -12.09111 -11.88647 -11.74922 -11.61104 -11.51883 -11.42478 -11.01311 -10.92352 -10.75834 -10.53934 -9.61573 -9.46940 -8.82504 -7.82270 -5.06644 1.47062 1.50495 1.51599 1.56290 1.87197 2.60756 2.63347 2.84939 3.41252 3.52030 3.66770 3.81623 3.87088 3.88294 3.94443 3.99350 4.05081 4.19893 4.21129 4.26397 4.32819 4.37991 4.41131 4.49201 4.56233 4.59627 4.59933 4.65708 4.70866 4.73617 4.77605 4.81915 4.86209 4.90899 4.94096 5.02112 5.08013 5.13881 5.19084 5.26780 5.28722 5.36570 5.39682 5.57642 5.65224 5.67011 5.74496 5.77919 5.90448 6.02644 6.39881 6.43479 7.11537 7.47662 8.24594 8.47930 9.41096 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003471 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.065331 B = 8065.015651 C = 8454.993970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.048 3.952 3 N -0.526 5.526 4 C 0.017 3.983 5 C 0.057 3.943 6 O -0.388 6.388 7 C 0.084 3.916 8 C 0.035 3.965 9 H 0.071 0.929 10 C 0.521 3.479 11 O -0.560 6.560 12 N -0.597 5.597 13 C 0.121 3.879 14 C -0.119 4.119 15 C 0.195 3.805 16 C -0.118 4.118 17 C -0.136 4.136 18 N -0.716 5.716 19 C -0.203 4.203 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.969 5.969 23 Si 0.951 3.049 24 H -0.284 1.284 25 H -0.307 1.307 26 H -0.281 1.281 27 C -0.130 4.130 28 C 0.120 3.880 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.114 0.886 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.370 0.630 50 H 0.243 0.757 51 H 0.077 0.923 52 H 0.068 0.932 53 H 0.055 0.945 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 15.345 -5.032 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 N -0.252 5.252 4 C -0.110 4.110 5 C -0.019 4.019 6 O -0.306 6.306 7 C 0.006 3.994 8 C -0.077 4.077 9 H 0.088 0.912 10 C 0.309 3.691 11 O -0.439 6.439 12 N -0.329 5.329 13 C -0.002 4.002 14 C -0.157 4.157 15 C 0.105 3.895 16 C -0.158 4.158 17 C -0.194 4.194 18 N -0.356 5.356 19 C -0.335 4.335 20 H 0.093 0.907 21 C -0.264 4.264 22 N -0.621 5.621 23 Si 0.783 3.217 24 H -0.211 1.211 25 H -0.234 1.234 26 H -0.208 1.208 27 C -0.170 4.170 28 C -0.002 4.002 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.203 0.797 50 H 0.052 0.948 51 H 0.096 0.904 52 H 0.087 0.913 53 H 0.074 0.926 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.278 15.706 -4.475 20.432 hybrid contribution 1.203 -2.060 -0.764 2.505 sum -11.075 13.647 -5.240 18.339 Atomic orbital electron populations 1.21642 0.92754 1.02155 1.02508 1.22141 0.98057 0.87882 0.99906 1.62057 1.14442 1.18712 1.30031 1.22996 1.03645 0.95981 0.88418 1.22938 0.81677 0.94844 1.02449 1.88011 1.27716 1.78685 1.36204 1.22513 1.02220 0.88174 0.86518 1.22312 0.91686 0.99580 0.94128 0.91162 1.20443 0.81731 0.77997 0.88954 1.90651 1.41598 1.59410 1.52192 1.48172 1.11101 1.53831 1.19842 1.21441 0.98978 0.95328 0.84426 1.22032 0.93440 1.01936 0.98340 1.19825 0.92660 0.84874 0.92163 1.21831 0.98509 0.98481 0.96940 1.21588 1.00297 1.00160 0.97309 1.42575 1.31866 1.02664 1.58471 1.19321 1.04564 0.90752 1.18905 0.90675 1.25258 1.01545 0.96220 1.03422 1.69787 1.42790 0.98472 1.51071 0.85538 0.80880 0.75797 0.79515 1.21100 1.23410 1.20800 1.22253 0.97281 0.99046 0.98445 1.21700 0.85064 1.01688 0.91795 0.91048 0.91507 0.92889 0.94466 0.93089 0.87103 0.93768 0.91848 0.85486 0.92035 0.86791 0.92991 0.90046 0.90565 0.89983 0.91134 0.93658 0.93391 0.92617 0.94537 0.79691 0.94772 0.90424 0.91318 0.92620 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.97 71.98 0.72 -1.89 16 2 C 0.05 1.17 5.35 86.30 0.46 1.63 16 3 N -0.53 -12.59 4.23 -874.37 -3.69 -16.29 16 4 C 0.02 0.29 5.47 86.31 0.47 0.77 16 5 C 0.06 0.92 7.01 72.02 0.50 1.42 16 6 O -0.39 -8.28 10.83 -148.98 -1.61 -9.89 16 7 C 0.08 1.85 6.10 72.02 0.44 2.29 16 8 C 0.04 0.89 1.52 44.18 0.07 0.96 16 9 H 0.07 1.80 6.59 -2.39 -0.02 1.78 16 10 C 0.52 16.06 5.63 87.66 0.49 16.55 16 11 O -0.56 -20.58 14.95 -3.02 -0.05 -20.63 16 12 N -0.60 -18.33 2.97 -818.88 -2.43 -20.76 16 13 C 0.12 3.94 6.17 86.36 0.53 4.47 16 14 C -0.12 -3.56 4.67 30.68 0.14 -3.42 16 15 C 0.19 6.47 0.43 3.63 0.00 6.47 16 16 C -0.12 -3.73 4.78 30.59 0.15 -3.59 16 17 C -0.14 -4.46 9.33 71.98 0.67 -3.79 16 18 N -0.72 -30.95 3.22 -303.22 -0.98 -31.93 16 19 C -0.20 -9.95 8.68 84.03 0.73 -9.22 16 20 H 0.08 3.55 6.72 -2.91 -0.02 3.53 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.97 -56.55 13.06 21.65 0.28 -56.27 16 23 Si 0.95 44.44 29.55 68.60 2.03 46.47 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 C -0.13 -3.83 4.72 30.67 0.14 -3.68 16 28 C 0.12 3.58 5.83 86.36 0.50 4.08 16 29 H 0.07 1.09 6.74 -2.39 -0.02 1.08 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 0.86 8.05 -2.39 -0.02 0.84 16 33 H 0.05 1.57 5.94 -2.39 -0.01 1.56 16 34 H 0.11 1.48 6.64 -2.39 -0.02 1.47 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 2.27 7.35 -2.38 -0.02 2.25 16 40 H 0.05 1.95 6.92 -2.39 -0.02 1.93 16 41 H 0.08 2.68 7.00 -2.38 -0.02 2.66 16 42 H 0.08 2.31 6.52 -2.39 -0.02 2.29 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.58 7.38 -2.39 -0.02 1.56 16 46 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.62 6.74 -2.39 -0.02 1.60 16 48 H 0.04 1.48 7.40 -2.39 -0.02 1.47 16 49 H 0.37 18.05 6.45 -92.71 -0.60 17.45 16 50 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 51 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.07 2.15 7.25 -2.39 -0.02 2.14 16 53 H 0.06 2.07 7.74 -2.39 -0.02 2.05 16 54 H 0.09 2.30 4.90 -2.39 -0.01 2.29 16 Total: -1.00 -63.05 397.35 0.33 -62.72 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.29 Total: 36.95 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.50 Total: 9.63 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -6.82 Total: -125.24 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.66 Total: -30.52 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.05 0.33 -62.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281021207.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.053 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds