Wall clock time and date at job start Sat Apr 11 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46894 * 109.47368 * 2 1 4 4 C 1.47016 * 110.99867 * 46.36540 * 3 2 1 5 5 C 1.53103 * 109.25587 * 182.39399 * 4 3 2 6 6 O 1.43021 * 109.25663 * 303.14668 * 5 4 3 7 7 C 1.43019 * 113.77207 * 58.64772 * 6 5 4 8 8 C 1.47017 * 110.99961 * 170.00024 * 3 2 1 9 9 H 1.08996 * 109.50192 * 297.58607 * 8 3 2 10 10 C 1.50694 * 109.50730 * 57.67363 * 8 3 2 11 11 O 1.21283 * 119.99842 * 28.71613 * 10 8 3 12 12 N 1.34770 * 120.00154 * 208.71876 * 10 8 3 13 13 C 1.46922 * 120.63559 * 174.81095 * 12 10 8 14 14 C 1.53191 * 108.78162 * 126.41040 * 13 12 10 15 15 C 1.53040 * 109.31191 * 54.63431 * 14 13 12 16 16 C 1.52997 * 109.46345 * 178.61934 * 15 14 13 17 17 C 1.52994 * 109.47238 * 185.58169 * 16 15 14 18 18 N 1.46502 * 109.46031 * 58.65844 * 15 14 13 19 19 C 1.36937 * 119.99881 * 62.67591 * 18 15 14 20 20 H 1.08001 * 120.00032 * 4.85701 * 19 18 15 21 21 C 1.38817 * 119.99975 * 184.85676 * 19 18 15 22 22 N 1.31616 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99876 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47118 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47122 * 119.99908 * 23 21 19 26 26 H 1.48501 * 109.47000 * 240.00035 * 23 21 19 27 27 C 1.53044 * 109.54010 * 298.63993 * 15 14 13 28 28 C 1.46927 * 120.63089 * 354.82877 * 12 10 8 29 29 H 1.08997 * 109.47660 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47126 * 300.00128 * 1 2 3 31 31 H 1.09005 * 109.46871 * 59.99662 * 1 2 3 32 32 H 1.09008 * 109.46936 * 239.99986 * 2 1 3 33 33 H 1.08995 * 109.46853 * 120.00462 * 2 1 3 34 34 H 1.09001 * 109.50735 * 302.32124 * 4 3 2 35 35 H 1.09001 * 109.50912 * 62.41530 * 4 3 2 36 36 H 1.08993 * 109.50798 * 63.08638 * 5 4 3 37 37 H 1.08998 * 109.50431 * 183.17705 * 5 4 3 38 38 H 1.08999 * 109.54489 * 181.43563 * 7 6 5 39 39 H 1.09002 * 109.47276 * 61.31002 * 7 6 5 40 40 H 1.09001 * 109.58790 * 6.62227 * 13 12 10 41 41 H 1.08995 * 109.70598 * 246.27029 * 13 12 10 42 42 H 1.08994 * 109.50408 * 174.59172 * 14 13 12 43 43 H 1.09000 * 109.49594 * 294.68961 * 14 13 12 44 44 H 1.09008 * 109.47015 * 305.58047 * 16 15 14 45 45 H 1.08993 * 109.47318 * 65.57785 * 16 15 14 46 46 H 1.08997 * 109.47422 * 302.88593 * 17 16 15 47 47 H 1.08997 * 109.47520 * 62.89091 * 17 16 15 48 48 H 1.09003 * 109.47333 * 182.88499 * 17 16 15 49 49 H 0.97001 * 120.00219 * 242.68175 * 18 15 14 50 50 H 0.96998 * 120.00045 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.49420 * 301.41202 * 27 15 14 52 52 H 1.08998 * 109.52575 * 181.32998 * 27 15 14 53 53 H 1.09003 * 109.58711 * 353.38153 * 28 12 10 54 54 H 1.09000 * 109.58706 * 113.79615 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.3025 2.1973 0.9934 5 6 1.8010 3.6430 0.9183 6 8 3.2166 3.6648 1.1213 7 6 3.9473 2.8840 0.1717 8 6 3.4698 1.4310 0.2383 9 1 3.6898 1.0204 1.2237 10 6 4.1789 0.6194 -0.8149 11 8 3.6890 0.4963 -1.9175 12 7 5.3574 0.0303 -0.5316 13 6 6.0053 -0.8560 -1.5080 14 6 7.4390 -0.3691 -1.7408 15 6 8.1662 -0.2758 -0.3974 16 6 9.6091 0.1772 -0.6291 17 6 10.3751 0.1370 0.6946 18 7 8.1655 -1.5898 0.2503 19 6 8.8007 -2.6469 -0.3450 20 1 9.3682 -2.4951 -1.2513 21 6 8.7153 -3.9136 0.2165 22 7 8.0242 -4.0984 1.3213 23 14 9.5825 -5.3553 -0.5951 24 1 10.2874 -4.8860 -1.8150 25 1 10.5671 -5.9376 0.3519 26 1 8.5827 -6.3885 -0.9672 27 6 7.4523 0.7362 0.5018 28 6 6.0188 0.2618 0.7599 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.2334 2.1697 0.7826 35 1 1.4872 1.7992 1.9911 36 1 1.5674 4.0581 -0.0620 37 1 1.3128 4.2369 1.6909 38 1 5.0112 2.9285 0.4046 39 1 3.7768 3.2776 -0.8304 40 1 5.4535 -0.8298 -2.4477 41 1 6.0236 -1.8756 -1.1234 42 1 7.9614 -1.0725 -2.3891 43 1 7.4176 0.6136 -2.2118 44 1 10.0883 -0.4890 -1.3466 45 1 9.6121 1.1947 -1.0199 46 1 9.8668 0.7633 1.4277 47 1 10.4162 -0.8892 1.0597 48 1 11.3882 0.5082 0.5397 49 1 7.7150 -1.7112 1.1008 50 1 7.9642 -4.9836 1.7134 51 1 7.4307 1.7084 0.0096 52 1 7.9840 0.8199 1.4497 53 1 5.4758 1.0254 1.3168 54 1 6.0382 -0.6659 1.3319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281021208.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:08 Heat of formation + Delta-G solvation = -71.229614 kcal Electronic energy + Delta-G solvation = -32688.297048 eV Core-core repulsion = 28659.964703 eV Total energy + Delta-G solvation = -4028.332344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91436 -40.40940 -39.15654 -37.19157 -36.23795 -34.42808 -33.37426 -31.88576 -31.64124 -31.50773 -30.74069 -27.85949 -26.78557 -25.82649 -25.23455 -24.26060 -23.31972 -22.78735 -21.63638 -20.59505 -19.52679 -18.92708 -18.45662 -17.77041 -17.45478 -16.68299 -16.55846 -16.27452 -16.14223 -15.87145 -15.60681 -15.47034 -15.39631 -15.19248 -15.07680 -14.73810 -14.43477 -14.13396 -14.05317 -13.95068 -13.47328 -13.21306 -13.03633 -12.88600 -12.88399 -12.83664 -12.60901 -12.56453 -12.39143 -12.29753 -12.12006 -12.07930 -11.95782 -11.80345 -11.60466 -11.49969 -11.37847 -11.02419 -10.90569 -10.79277 -10.55147 -9.62054 -9.43495 -8.82861 -7.84927 -5.07971 1.45776 1.46708 1.49224 1.55257 1.87663 2.61136 2.62104 2.86010 3.41475 3.50224 3.67671 3.77532 3.87815 3.89853 3.93124 4.00654 4.09655 4.16898 4.18845 4.26925 4.29991 4.36880 4.46377 4.47415 4.54659 4.57119 4.58122 4.67988 4.68721 4.74732 4.79401 4.83949 4.88625 4.92180 4.94335 5.04783 5.07818 5.14781 5.17470 5.19931 5.29462 5.38026 5.41141 5.53777 5.65851 5.68215 5.75721 5.78442 5.91306 6.03724 6.38706 6.45003 7.12285 7.46673 8.23628 8.46967 9.38554 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003455 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.105738 B = 8102.970922 C = 9097.043694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.528 5.528 4 C 0.013 3.987 5 C 0.057 3.943 6 O -0.386 6.386 7 C 0.083 3.917 8 C 0.037 3.963 9 H 0.076 0.924 10 C 0.519 3.481 11 O -0.565 6.565 12 N -0.596 5.596 13 C 0.132 3.868 14 C -0.126 4.126 15 C 0.195 3.805 16 C -0.119 4.119 17 C -0.133 4.133 18 N -0.714 5.714 19 C -0.200 4.200 20 H 0.070 0.930 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.947 3.053 24 H -0.271 1.271 25 H -0.301 1.301 26 H -0.304 1.304 27 C -0.124 4.124 28 C 0.109 3.891 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.049 0.951 49 H 0.373 0.627 50 H 0.244 0.756 51 H 0.090 0.910 52 H 0.089 0.911 53 H 0.105 0.895 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 17.676 1.427 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.114 4.114 5 C -0.020 4.020 6 O -0.304 6.304 7 C 0.005 3.995 8 C -0.075 4.075 9 H 0.093 0.907 10 C 0.307 3.693 11 O -0.443 6.443 12 N -0.329 5.329 13 C 0.009 3.991 14 C -0.166 4.166 15 C 0.105 3.895 16 C -0.158 4.158 17 C -0.190 4.190 18 N -0.354 5.354 19 C -0.333 4.333 20 H 0.088 0.912 21 C -0.263 4.263 22 N -0.618 5.618 23 Si 0.779 3.221 24 H -0.195 1.195 25 H -0.229 1.229 26 H -0.232 1.232 27 C -0.162 4.162 28 C -0.014 4.014 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.206 0.794 50 H 0.053 0.947 51 H 0.109 0.891 52 H 0.107 0.893 53 H 0.123 0.877 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.320 17.821 0.396 21.116 hybrid contribution 0.584 -2.511 0.306 2.596 sum -10.736 15.311 0.702 18.713 Atomic orbital electron populations 1.21844 0.92355 1.02832 1.03038 1.22149 0.97886 0.88293 0.99806 1.62063 1.01263 1.12179 1.49949 1.23070 1.00785 0.94188 0.93357 1.22957 0.80377 0.95245 1.03389 1.88005 1.19447 1.69211 1.53755 1.22521 0.97207 0.85966 0.93764 1.22339 0.90177 0.98425 0.96554 0.90664 1.20563 0.80617 0.79517 0.88652 1.90647 1.66383 1.62549 1.24753 1.48157 1.20741 1.46170 1.17819 1.21247 0.93373 0.92659 0.91812 1.22224 0.94479 1.00467 0.99422 1.19831 0.93202 0.85440 0.91054 1.21820 0.96232 0.99993 0.97731 1.21563 0.98886 1.01175 0.97406 1.42547 1.64112 1.04875 1.23897 1.19345 1.21207 0.87407 1.05316 0.91249 1.25198 1.02762 0.99384 0.98998 1.69768 1.47947 1.21382 1.22725 0.85439 0.77602 0.81074 0.77937 1.19540 1.22874 1.23233 1.22105 0.93983 0.98786 1.01313 1.21874 0.94125 1.01549 0.83812 0.91432 0.90527 0.91803 0.92742 0.95496 0.86750 0.93552 0.92055 0.85370 0.86320 0.92321 0.91492 0.93243 0.92532 0.91327 0.94285 0.90995 0.92210 0.94533 0.93221 0.79366 0.94730 0.89119 0.89277 0.87700 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.18 71.98 0.66 -1.93 16 2 C 0.05 1.16 5.37 86.31 0.46 1.62 16 3 N -0.53 -12.65 4.42 -874.39 -3.87 -16.52 16 4 C 0.01 0.22 4.94 86.32 0.43 0.65 16 5 C 0.06 0.87 7.01 72.02 0.50 1.37 16 6 O -0.39 -7.75 10.83 -148.98 -1.61 -9.36 16 7 C 0.08 1.76 6.12 72.01 0.44 2.20 16 8 C 0.04 0.92 1.48 44.18 0.07 0.99 16 9 H 0.08 1.80 6.53 -2.39 -0.02 1.79 16 10 C 0.52 16.40 5.96 87.66 0.52 16.92 16 11 O -0.56 -21.87 14.83 -3.04 -0.05 -21.91 16 12 N -0.60 -18.77 2.97 -818.93 -2.43 -21.20 16 13 C 0.13 4.82 6.18 86.36 0.53 5.36 16 14 C -0.13 -4.24 4.75 30.67 0.15 -4.10 16 15 C 0.19 6.47 0.44 3.63 0.00 6.47 16 16 C -0.12 -3.69 4.66 30.59 0.14 -3.55 16 17 C -0.13 -4.13 9.46 71.98 0.68 -3.45 16 18 N -0.71 -30.84 3.30 -303.21 -1.00 -31.84 16 19 C -0.20 -10.04 8.33 84.03 0.70 -9.34 16 20 H 0.07 3.46 6.78 -2.91 -0.02 3.44 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 23 Si 0.95 45.46 29.55 68.60 2.03 47.49 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 26 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 27 C -0.12 -3.22 4.76 30.67 0.15 -3.08 16 28 C 0.11 2.96 5.86 86.36 0.51 3.47 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.06 6.28 -2.39 -0.02 1.04 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.74 6.58 -2.38 -0.02 1.72 16 33 H 0.03 0.69 8.08 -2.39 -0.02 0.67 16 34 H 0.11 1.48 6.05 -2.39 -0.01 1.46 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 2.12 7.48 -2.39 -0.02 2.10 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 2.55 7.00 -2.39 -0.02 2.53 16 41 H 0.05 2.17 7.74 -2.39 -0.02 2.15 16 42 H 0.06 2.10 7.57 -2.39 -0.02 2.08 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.04 1.37 7.25 -2.38 -0.02 1.35 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.62 6.42 -2.39 -0.02 1.61 16 47 H 0.04 1.42 7.22 -2.39 -0.02 1.40 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 49 H 0.37 17.66 6.39 -92.71 -0.59 17.07 16 50 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.09 2.21 6.46 -2.39 -0.02 2.19 16 53 H 0.10 2.22 4.97 -2.39 -0.01 2.20 16 54 H 0.06 1.84 6.89 -2.39 -0.02 1.82 16 Total: -1.00 -65.42 395.71 0.06 -65.37 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.30 Total: 33.76 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.41 Total: 10.21 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -7.02 Total: -125.54 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.66 Total: -31.28 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -65.42 0.06 -65.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281021208.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.862 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds