Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 N 1.46500 * 109.46226 * 302.19967 * 3 2 1 5 5 C 1.36932 * 119.99705 * 301.68765 * 4 3 2 6 6 H 1.07994 * 120.00431 * 4.43510 * 5 4 3 7 7 C 1.38817 * 119.99795 * 184.43137 * 5 4 3 8 8 N 1.31614 * 119.99819 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99953 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47067 * 89.99730 * 9 7 5 11 11 H 1.48496 * 109.46832 * 209.99795 * 9 7 5 12 12 H 1.48503 * 109.47015 * 329.99763 * 9 7 5 13 13 C 1.53045 * 109.45639 * 62.17067 * 3 2 1 14 14 C 1.53198 * 109.31247 * 181.38183 * 13 3 2 15 15 N 1.46924 * 108.77618 * 305.36479 * 14 13 3 16 16 C 1.34768 * 120.63052 * 233.58311 * 15 14 13 17 17 O 1.21281 * 120.00232 * 4.88000 * 16 15 14 18 18 C 1.50699 * 119.99982 * 184.87545 * 16 15 14 19 19 H 1.09005 * 109.47390 * 321.05757 * 18 16 15 20 20 C 1.52997 * 109.47329 * 201.05572 * 18 16 15 21 21 C 1.53006 * 109.47043 * 64.76930 * 20 18 16 22 22 C 1.52995 * 109.47081 * 64.62161 * 21 20 18 23 23 C 1.53003 * 109.47079 * 184.61846 * 21 20 18 24 24 C 1.50704 * 109.47101 * 81.05723 * 18 16 15 25 25 N 1.34775 * 119.99964 * 207.04610 * 24 18 16 26 26 O 1.21280 * 120.00053 * 27.04286 * 24 18 16 27 27 C 1.46931 * 118.73753 * 53.86122 * 15 14 13 28 28 C 1.53037 * 109.46181 * 182.23474 * 3 2 1 29 29 H 1.08996 * 109.46650 * 302.47794 * 1 2 3 30 30 H 1.09005 * 109.47063 * 62.46976 * 1 2 3 31 31 H 1.08996 * 109.47360 * 182.47768 * 1 2 3 32 32 H 1.09002 * 109.47218 * 240.00843 * 2 1 3 33 33 H 1.09000 * 109.47391 * 120.00441 * 2 1 3 34 34 H 0.97003 * 119.99981 * 121.69333 * 4 3 2 35 35 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.49747 * 61.43318 * 13 3 2 37 37 H 1.08996 * 109.50053 * 301.33272 * 13 3 2 38 38 H 1.08994 * 109.58379 * 185.57762 * 14 13 3 39 39 H 1.09002 * 109.58022 * 65.15240 * 14 13 3 40 40 H 1.09001 * 109.47234 * 304.77281 * 20 18 16 41 41 H 1.09001 * 109.47682 * 184.77018 * 20 18 16 42 42 H 1.08994 * 109.47214 * 304.62037 * 21 20 18 43 43 H 1.08993 * 109.47751 * 173.80865 * 22 21 20 44 44 H 1.09009 * 109.47185 * 293.81137 * 22 21 20 45 45 H 1.09001 * 109.47509 * 53.80648 * 22 21 20 46 46 H 1.08994 * 109.47254 * 300.00167 * 23 21 20 47 47 H 1.09004 * 109.47049 * 59.99857 * 23 21 20 48 48 H 1.09002 * 109.47082 * 179.97438 * 23 21 20 49 49 H 0.97007 * 120.00251 * 5.00190 * 25 24 18 50 50 H 0.96997 * 120.00357 * 185.00456 * 25 24 18 51 51 H 1.08999 * 109.58514 * 65.92096 * 27 15 14 52 52 H 1.08991 * 109.58574 * 186.35217 * 27 15 14 53 53 H 1.09005 * 109.49740 * 298.57355 * 28 3 2 54 54 H 1.08998 * 109.49860 * 58.66370 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5088 2.1481 -1.1688 5 6 1.7656 1.6762 -2.4284 6 1 2.2982 0.7458 -2.5584 7 6 1.3411 2.3939 -3.5383 8 7 1.5883 1.9407 -4.7489 9 14 0.4203 4.0036 -3.3135 10 1 1.3907 5.1267 -3.2679 11 1 -0.5138 4.2024 -4.4506 12 1 -0.3479 3.9612 -2.0433 13 6 1.5749 2.1477 1.2761 14 6 2.0580 3.6014 1.2566 15 7 3.5135 3.6133 1.0569 16 6 4.3182 4.2772 1.9102 17 8 3.8529 4.7977 2.9019 18 6 5.7963 4.3727 1.6321 19 1 6.1519 3.4249 1.2277 20 6 6.5407 4.6839 2.9320 21 6 6.3815 3.5129 3.9039 22 6 7.0640 2.2725 3.3240 23 6 7.0274 3.8709 5.2439 24 6 6.0494 5.4719 0.6327 25 7 7.1302 5.4165 -0.1706 26 8 5.2806 6.4063 0.5513 27 6 4.0747 2.8929 -0.0941 28 6 3.5694 1.4426 -0.0563 29 1 -0.3632 0.5518 0.8669 30 1 -0.3633 0.4750 -0.9113 31 1 -0.3634 -1.0266 0.0444 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.9753 2.9495 -1.0505 35 1 1.2920 2.4423 -5.5245 36 1 1.9902 1.6380 2.1455 37 1 0.4863 2.1268 1.3272 38 1 1.8154 4.0798 2.2054 39 1 1.5727 4.1366 0.4404 40 1 6.1269 5.5871 3.3804 41 1 7.5984 4.8367 2.7174 42 1 5.3217 3.3075 4.0547 43 1 7.0468 1.4701 4.0615 44 1 6.5345 1.9525 2.4265 45 1 8.0970 2.5110 3.0707 46 1 8.0871 4.0763 5.0931 47 1 6.5411 4.7547 5.6570 48 1 6.9135 3.0368 5.9364 49 1 7.7052 4.6353 -0.1569 50 1 7.3331 6.1577 -0.7624 51 1 3.7505 3.3716 -1.0182 52 1 5.1630 2.9037 -0.0368 53 1 3.9659 0.9394 0.8257 54 1 3.9005 0.9197 -0.9535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281055194.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -102.018869 kcal Electronic energy + Delta-G solvation = -32870.860511 eV Core-core repulsion = 28841.193044 eV Total energy + Delta-G solvation = -4029.667467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04158 -40.46933 -39.35510 -37.35763 -36.29383 -34.80393 -34.48344 -32.79381 -32.16512 -31.64974 -30.95554 -27.95982 -26.82131 -25.93885 -25.30098 -24.27394 -23.17255 -22.14972 -21.15727 -20.27325 -19.73198 -19.46402 -18.75441 -18.34444 -17.63245 -16.80979 -16.47793 -16.31290 -16.19211 -15.83383 -15.61073 -15.43438 -15.21257 -15.05760 -14.64723 -14.62405 -14.51487 -14.30881 -14.15755 -13.83633 -13.42655 -13.25479 -13.15398 -13.00059 -12.96512 -12.83356 -12.64692 -12.47757 -12.36987 -12.13834 -11.97675 -11.93171 -11.80570 -11.61535 -11.57846 -11.55749 -11.49644 -11.07300 -10.98062 -10.90153 -10.76835 -10.70840 -9.66896 -9.14409 -7.93553 -5.21829 1.34303 1.34808 1.38244 1.42249 1.47477 1.95557 2.51236 2.59473 3.28695 3.39988 3.57047 3.66981 3.73438 3.83446 3.90787 4.06571 4.08454 4.09698 4.18703 4.22364 4.35932 4.44106 4.56400 4.59136 4.64623 4.71297 4.74235 4.77791 4.82465 4.84354 4.90317 4.98784 5.03076 5.08533 5.09865 5.15626 5.20550 5.24343 5.31221 5.33894 5.36011 5.49511 5.55733 5.55957 5.63312 5.68867 5.79394 5.93281 6.30197 6.32314 6.42772 7.09531 7.18451 7.21874 7.96726 8.13612 9.28212 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004203 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.172304 B = 6660.822208 C = 7683.165303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.198 3.802 4 N -0.740 5.740 5 C -0.185 4.185 6 H 0.073 0.927 7 C -0.056 4.056 8 N -0.982 5.982 9 Si 0.924 3.076 10 H -0.297 1.297 11 H -0.305 1.305 12 H -0.259 1.259 13 C -0.121 4.121 14 C 0.114 3.886 15 N -0.600 5.600 16 C 0.531 3.469 17 O -0.568 6.568 18 C -0.128 4.128 19 H 0.148 0.852 20 C -0.084 4.084 21 C -0.097 4.097 22 C -0.149 4.149 23 C -0.141 4.141 24 C 0.526 3.474 25 N -0.825 5.825 26 O -0.588 6.588 27 C 0.117 3.883 28 C -0.127 4.127 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.357 0.643 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.423 0.577 50 H 0.411 0.589 51 H 0.048 0.952 52 H 0.100 0.900 53 H 0.085 0.915 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.265 -1.475 17.640 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.109 3.891 4 N -0.383 5.383 5 C -0.316 4.316 6 H 0.090 0.910 7 C -0.247 4.247 8 N -0.635 5.635 9 Si 0.756 3.244 10 H -0.224 1.224 11 H -0.232 1.232 12 H -0.184 1.184 13 C -0.159 4.159 14 C -0.009 4.009 15 N -0.332 5.332 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.151 4.151 19 H 0.165 0.835 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.206 4.206 23 C -0.199 4.199 24 C 0.310 3.690 25 N -0.390 5.390 26 O -0.467 6.467 27 C -0.006 4.006 28 C -0.167 4.167 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.191 0.809 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.255 0.745 50 H 0.243 0.757 51 H 0.067 0.933 52 H 0.118 0.882 53 H 0.104 0.896 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.514 -0.831 18.093 23.210 hybrid contribution -0.894 1.334 -1.210 2.011 sum 13.620 0.503 16.883 21.698 Atomic orbital electron populations 1.21622 0.96182 1.00624 1.01154 1.21795 0.96274 0.96658 1.00883 1.19845 0.92052 0.91658 0.85556 1.42952 1.62503 1.30947 1.01926 1.18871 1.26909 1.03374 0.82460 0.90957 1.25097 1.03498 1.00845 0.95225 1.69809 1.54704 1.41379 0.97592 0.85872 0.78997 0.82552 0.77001 1.22419 1.23213 1.18429 1.22107 1.01884 0.93989 0.97969 1.21495 0.79886 0.98138 1.01341 1.48118 1.07102 1.50937 1.27012 1.20278 0.88704 0.77032 0.82102 1.90624 1.76986 1.47987 1.29128 1.21716 0.93595 1.01001 0.98834 0.83465 1.21457 1.00291 0.99379 0.91121 1.21100 1.00029 0.95000 0.95418 1.21935 1.01285 0.96408 1.01006 1.21767 1.01093 1.01191 0.95822 1.20296 0.81134 0.86335 0.81217 1.43604 1.27780 1.25189 1.42424 1.90806 1.47672 1.37537 1.70705 1.21822 0.98568 0.92920 0.87246 1.22289 0.97064 0.94919 1.02396 0.92194 0.94688 0.93013 0.93945 0.90532 0.80928 0.93996 0.89102 0.89862 0.89784 0.93736 0.92975 0.87659 0.93196 0.92075 0.92566 0.90444 0.91061 0.93978 0.92019 0.74503 0.75656 0.93313 0.88202 0.89611 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.46 71.98 0.68 -3.56 16 2 C -0.12 -3.54 4.75 30.60 0.15 -3.40 16 3 C 0.20 6.31 0.43 3.63 0.00 6.31 16 4 N -0.74 -30.65 3.13 -303.22 -0.95 -31.60 16 5 C -0.18 -9.38 9.12 84.04 0.77 -8.61 16 6 H 0.07 3.96 6.96 -2.91 -0.02 3.94 16 7 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 8 N -0.98 -60.71 13.97 21.65 0.30 -60.40 16 9 Si 0.92 46.09 27.78 68.60 1.91 47.99 16 10 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 11 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 12 H -0.26 -11.87 6.46 99.48 0.64 -11.23 16 13 C -0.12 -3.38 4.70 30.68 0.14 -3.23 16 14 C 0.11 3.68 6.16 86.36 0.53 4.21 16 15 N -0.60 -18.51 2.97 -818.08 -2.43 -20.94 16 16 C 0.53 16.42 5.50 87.66 0.48 16.90 16 17 O -0.57 -21.22 14.47 -3.03 -0.04 -21.26 16 18 C -0.13 -2.77 1.56 -12.29 -0.02 -2.79 16 19 H 0.15 2.13 4.60 -2.38 -0.01 2.12 16 20 C -0.08 -1.57 3.81 30.60 0.12 -1.45 16 21 C -0.10 -1.64 2.75 -10.79 -0.03 -1.67 16 22 C -0.15 -1.71 8.79 71.98 0.63 -1.08 16 23 C -0.14 -2.07 9.19 71.98 0.66 -1.40 16 24 C 0.53 13.22 7.03 87.66 0.62 13.84 16 25 N -0.83 -11.75 8.87 -173.53 -1.54 -13.29 16 26 O -0.59 -22.06 17.14 -3.03 -0.05 -22.12 16 27 C 0.12 3.40 6.00 86.51 0.52 3.92 16 28 C -0.13 -3.59 4.75 30.82 0.15 -3.45 16 29 H 0.06 1.60 6.33 -2.39 -0.02 1.59 16 30 H 0.03 1.31 7.56 -2.38 -0.02 1.29 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.49 7.18 -2.39 -0.02 1.48 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.36 15.44 4.26 -92.71 -0.39 15.05 16 35 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.25 6.36 -2.39 -0.02 2.23 16 38 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 39 H 0.04 1.62 6.90 -2.39 -0.02 1.60 16 40 H 0.05 1.31 7.71 -2.39 -0.02 1.29 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.17 6.62 -2.39 -0.02 1.15 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.64 6.76 -2.38 -0.02 0.62 16 45 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.04 0.72 8.14 -2.38 -0.02 0.71 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.42 2.53 8.83 -92.70 -0.82 1.71 16 50 H 0.41 5.43 8.93 -92.71 -0.83 4.61 16 51 H 0.05 1.83 7.73 -2.39 -0.02 1.81 16 52 H 0.10 2.14 5.41 -2.39 -0.01 2.13 16 53 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 54 H 0.07 2.14 7.50 -2.39 -0.02 2.12 16 Total: -1.00 -78.49 404.88 1.88 -76.61 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -1.18 Total: 33.14 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.86 Total: 11.87 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -4.61 Total: -126.24 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.10 Total: -43.38 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.91 Total: 47.99 kcal Total: -78.49 1.88 -76.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281055194.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.408 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds