Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 C 1.50692 * 110.43405 * 305.60104 * 3 2 1 5 5 O 1.21291 * 119.99828 * 120.42081 * 4 3 2 6 6 N 1.34778 * 120.00580 * 300.41682 * 4 3 2 7 7 C 1.46502 * 119.99548 * 5.48115 * 6 4 3 8 8 C 1.46497 * 120.00252 * 185.48046 * 6 4 3 9 9 C 1.53002 * 109.46853 * 275.93457 * 8 6 4 10 10 H 1.09005 * 109.46880 * 61.56159 * 9 8 6 11 11 C 1.53008 * 109.47035 * 181.55842 * 9 8 6 12 12 N 1.46894 * 109.47431 * 301.55913 * 9 8 6 13 13 C 1.46900 * 110.99874 * 159.65212 * 12 9 8 14 14 C 1.50704 * 109.46932 * 180.02562 * 13 12 9 15 15 O 1.21292 * 120.00271 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00191 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00451 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99536 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00332 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99511 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99945 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47168 * 90.00329 * 21 19 17 23 23 H 1.48506 * 109.47004 * 209.99893 * 21 19 17 24 24 H 1.48495 * 109.47100 * 330.00005 * 21 19 17 25 25 C 1.54889 * 110.59828 * 68.22295 * 3 2 1 26 26 C 1.54890 * 102.74825 * 156.67609 * 25 3 2 27 27 C 1.54265 * 104.19293 * 322.05542 * 26 25 3 28 28 C 1.53864 * 106.60272 * 23.61082 * 27 26 25 29 29 H 1.09003 * 109.47059 * 65.04425 * 1 2 3 30 30 H 1.09001 * 109.47200 * 185.04243 * 1 2 3 31 31 H 1.08997 * 109.47075 * 305.04824 * 1 2 3 32 32 H 1.09001 * 109.47265 * 240.00045 * 2 1 3 33 33 H 1.08996 * 109.47303 * 119.99849 * 2 1 3 34 34 H 1.09000 * 109.47082 * 204.87877 * 7 6 4 35 35 H 1.09000 * 109.47082 * 324.87546 * 7 6 4 36 36 H 1.08991 * 109.47276 * 84.87272 * 7 6 4 37 37 H 1.09004 * 109.47260 * 155.94079 * 8 6 4 38 38 H 1.08999 * 109.47421 * 35.93674 * 8 6 4 39 39 H 1.08994 * 109.46649 * 60.00101 * 11 9 8 40 40 H 1.09001 * 109.46789 * 180.02562 * 11 9 8 41 41 H 1.09003 * 109.47122 * 300.00176 * 11 9 8 42 42 H 1.00906 * 111.00009 * 35.70222 * 12 9 8 43 43 H 1.08997 * 109.47541 * 300.00208 * 13 12 9 44 44 H 1.09005 * 109.47102 * 60.00494 * 13 12 9 45 45 H 0.97004 * 119.99649 * 0.02562 * 16 14 13 46 46 H 0.97000 * 119.99443 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.75209 * 274.99122 * 25 3 2 48 48 H 1.09005 * 110.75566 * 38.35968 * 25 3 2 49 49 H 1.09008 * 110.48139 * 203.37901 * 26 25 3 50 50 H 1.08998 * 110.48633 * 80.73494 * 26 25 3 51 51 H 1.09002 * 110.03111 * 264.32289 * 27 26 25 52 52 H 1.09004 * 110.03144 * 142.89760 * 27 26 25 53 53 H 1.09000 * 110.03841 * 240.71460 * 28 27 26 54 54 H 1.09004 * 110.03356 * 119.28079 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4403 2.2126 -1.1482 5 8 0.7726 3.2018 -0.9319 6 7 1.6459 1.8022 -2.4154 7 6 2.3495 0.5432 -2.6725 8 6 1.1657 2.6150 -3.5356 9 6 -0.3060 2.2943 -3.8043 10 1 -0.8987 2.5438 -2.9242 11 6 -0.7968 3.1147 -4.9990 12 7 -0.4490 0.8629 -4.1014 13 6 -1.8330 0.4174 -3.8917 14 6 -1.9404 -1.0528 -4.2050 15 8 -0.9604 -1.6690 -4.5670 16 7 -3.1255 -1.6830 -4.0831 17 6 -3.2232 -3.0206 -4.3676 18 1 -2.3502 -3.5694 -4.6891 19 6 -4.4451 -3.6702 -4.2424 20 7 -5.5072 -3.0022 -3.8517 21 14 -4.5779 -5.4928 -4.6295 22 1 -4.3144 -6.2806 -3.3986 23 1 -5.9439 -5.7948 -5.1275 24 1 -3.5810 -5.8517 -5.6699 25 6 1.7145 2.1356 1.3464 26 6 2.7698 3.2674 1.4122 27 6 4.0445 2.6308 0.8207 28 6 3.5805 1.4706 -0.0771 29 1 -0.3633 0.4336 -0.9317 30 1 -0.3633 -1.0237 0.0903 31 1 -0.3633 0.5901 0.8413 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.8064 0.5777 -3.6615 35 1 3.1242 0.3996 -1.9192 36 1 1.6416 -0.2843 -2.6279 37 1 1.7545 2.3915 -4.4253 38 1 1.2681 3.6716 -3.2881 39 1 -0.2040 2.8652 -5.8790 40 1 -1.8454 2.8865 -5.1901 41 1 -0.6907 4.1769 -4.7786 42 1 0.1949 0.3134 -3.5521 43 1 -2.1165 0.5888 -2.8533 44 1 -2.4987 0.9786 -4.5475 45 1 -3.9094 -1.1902 -3.7940 46 1 -6.3601 -3.4558 -3.7640 47 1 0.7057 2.5483 1.3344 48 1 1.8394 1.4420 2.1780 49 1 2.9393 3.5714 2.4452 50 1 2.4539 4.1191 0.8098 51 1 4.6791 2.2521 1.6220 52 1 4.5890 3.3664 0.2286 53 1 3.9898 0.5288 0.2883 54 1 3.8997 1.6431 -1.1050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283693126.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -99.366581 kcal Electronic energy + Delta-G solvation = -32056.652343 eV Core-core repulsion = 28027.099888 eV Total energy + Delta-G solvation = -4029.552455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02749 -40.24140 -38.84705 -37.71881 -36.19727 -35.80521 -34.22675 -33.30176 -32.22886 -29.92994 -28.99792 -28.30187 -28.13610 -26.98916 -25.72218 -23.76232 -22.79628 -21.54318 -21.34229 -21.12801 -19.93471 -19.60818 -18.05574 -17.44176 -17.34209 -17.20355 -16.64518 -16.55327 -16.24711 -15.94989 -15.87560 -15.49103 -15.41871 -15.01100 -14.35408 -14.30612 -14.19004 -14.11569 -13.84296 -13.75316 -13.53308 -13.48221 -13.32771 -13.03513 -12.90976 -12.80754 -12.72463 -12.61296 -12.51124 -12.41905 -12.22226 -12.12241 -12.02235 -11.96279 -11.87332 -11.57079 -11.51557 -11.33926 -11.27847 -10.56847 -10.36883 -10.03775 -9.70063 -9.42588 -8.47639 -5.96876 1.37292 1.41210 1.54447 1.61306 1.99003 2.01158 2.27786 2.86038 3.19011 3.37887 3.44188 3.50075 3.62277 3.85787 3.96091 4.12187 4.17149 4.19836 4.25206 4.25545 4.33651 4.35774 4.39990 4.48436 4.50814 4.51976 4.54993 4.59040 4.67970 4.73902 4.75373 4.82988 4.87466 4.91165 4.93973 5.01386 5.03057 5.06536 5.09990 5.12829 5.21863 5.27730 5.30440 5.36714 5.39702 5.49443 5.54852 5.84541 6.04804 6.34081 6.41388 6.56926 7.10035 7.16128 7.52583 8.06588 8.69986 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.002935 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.370672 B = 9536.600633 C =10456.173510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.080 4.080 4 C 0.528 3.472 5 O -0.574 6.574 6 N -0.615 5.615 7 C 0.058 3.942 8 C 0.121 3.879 9 C 0.069 3.931 10 H 0.024 0.976 11 C -0.134 4.134 12 N -0.665 5.665 13 C 0.064 3.936 14 C 0.443 3.557 15 O -0.615 6.615 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.083 0.917 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.345 0.655 43 H 0.044 0.956 44 H 0.099 0.901 45 H 0.394 0.606 46 H 0.277 0.723 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.084 0.916 52 H 0.062 0.938 53 H 0.100 0.900 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.483 11.552 8.937 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.083 4.083 4 C 0.317 3.683 5 O -0.453 6.453 6 N -0.347 5.347 7 C -0.083 4.083 8 C -0.002 4.002 9 C -0.042 4.042 10 H 0.042 0.958 11 C -0.192 4.192 12 N -0.300 5.300 13 C -0.069 4.069 14 C 0.230 3.770 15 O -0.501 6.501 16 N -0.210 5.210 17 C -0.461 4.461 18 H 0.101 0.899 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.139 4.139 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.153 4.153 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.167 0.833 43 H 0.062 0.938 44 H 0.117 0.883 45 H 0.227 0.773 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.063 0.937 51 H 0.103 0.897 52 H 0.081 0.919 53 H 0.119 0.881 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.528 11.698 8.146 23.377 hybrid contribution -1.431 -0.518 0.739 1.692 sum 17.097 11.181 8.885 22.276 Atomic orbital electron populations 1.21766 0.97319 1.01552 1.00367 1.21924 0.94740 0.93833 1.05025 1.21687 0.97637 0.95539 0.93439 1.20896 0.78990 0.84139 0.84246 1.90642 1.40728 1.29058 1.84902 1.47910 1.57502 1.23716 1.05546 1.22497 0.97228 0.83958 1.04666 1.21719 0.93123 0.95976 0.89414 1.21969 0.97200 0.87918 0.97129 0.95824 1.21712 1.01171 0.99033 0.97266 1.60348 1.03993 1.03514 1.62168 1.21535 0.93146 0.92358 0.99860 1.20606 0.83425 0.89847 0.83147 1.90464 1.37875 1.68763 1.52979 1.41941 1.09593 1.09657 1.59763 1.19691 0.96422 0.85660 1.44327 0.89947 1.26092 0.94130 1.04708 0.96473 1.69692 1.00808 1.38739 1.47102 0.84901 0.77806 0.76750 0.78743 1.19500 1.19697 1.19501 1.22424 0.99057 0.97481 0.94894 1.22332 0.95139 0.97494 1.01209 1.22137 0.97206 0.97080 0.99339 1.22419 0.90618 1.01027 1.01193 0.95982 0.92571 0.92481 0.89667 0.88402 0.89045 0.87584 0.93442 0.87603 0.89708 0.91248 0.93282 0.90778 0.83340 0.93812 0.88293 0.77287 0.91320 0.93106 0.89052 0.90416 0.93655 0.89697 0.91922 0.88129 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.41 71.98 0.68 -3.28 16 2 C -0.12 -2.24 4.48 30.60 0.14 -2.11 16 3 C -0.08 -1.53 0.27 -51.85 -0.01 -1.54 16 4 C 0.53 13.37 4.85 87.65 0.43 13.80 16 5 O -0.57 -18.73 14.72 -3.06 -0.05 -18.77 16 6 N -0.61 -13.84 2.44 -846.76 -2.07 -15.90 16 7 C 0.06 1.08 7.37 127.77 0.94 2.02 16 8 C 0.12 2.75 5.02 86.38 0.43 3.18 16 9 C 0.07 1.89 2.87 44.92 0.13 2.02 16 10 H 0.02 0.77 7.72 -2.38 -0.02 0.75 16 11 C -0.13 -3.17 9.36 71.98 0.67 -2.50 16 12 N -0.66 -22.29 5.92 -495.56 -2.93 -25.22 16 13 C 0.06 2.43 5.97 85.56 0.51 2.94 16 14 C 0.44 21.64 7.82 87.66 0.69 22.32 16 15 O -0.61 -33.71 15.78 -3.07 -0.05 -33.76 16 16 N -0.57 -30.16 5.29 -306.98 -1.62 -31.78 16 17 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 18 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 21 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.10 -1.96 4.75 31.89 0.15 -1.81 16 26 C -0.12 -2.17 6.53 31.67 0.21 -1.96 16 27 C -0.12 -1.58 6.80 31.31 0.21 -1.36 16 28 C -0.12 -1.53 4.64 31.32 0.15 -1.38 16 29 H 0.02 0.67 7.32 -2.39 -0.02 0.65 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.44 7.25 -2.39 -0.02 1.42 16 32 H 0.09 1.56 4.47 -2.39 -0.01 1.55 16 33 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.09 1.45 7.79 -2.39 -0.02 1.43 16 35 H 0.11 1.41 3.86 -2.39 -0.01 1.40 16 36 H 0.05 1.11 5.71 -2.39 -0.01 1.09 16 37 H 0.11 2.02 7.78 -2.39 -0.02 2.00 16 38 H 0.08 1.93 7.69 -2.39 -0.02 1.91 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.25 7.18 -2.39 -0.02 1.23 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.34 11.78 4.92 -89.69 -0.44 11.34 16 43 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 44 H 0.10 3.51 7.14 -2.38 -0.02 3.50 16 45 H 0.39 20.08 7.90 -92.70 -0.73 19.35 16 46 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.05 1.28 7.17 -2.39 -0.02 1.26 16 48 H 0.09 1.41 8.00 -2.38 -0.02 1.39 16 49 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 50 H 0.04 1.02 7.69 -2.39 -0.02 1.00 16 51 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 53 H 0.10 0.92 7.84 -2.39 -0.02 0.90 16 54 H 0.08 0.98 6.02 -2.39 -0.01 0.97 16 Total: -1.00 -70.98 407.29 1.92 -69.05 By element: Atomic # 1 Polarization: 50.07 SS G_CDS: -0.26 Total: 49.80 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.60 Total: 11.90 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -6.34 Total: -123.23 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.09 Total: -52.53 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.98 1.92 -69.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283693126.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.315 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds