Wall clock time and date at job start Sat Apr 11 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47034 * 271.97395 * 3 2 1 5 5 H 1.48494 * 109.47051 * 31.97766 * 3 2 1 6 6 H 1.48500 * 109.46811 * 151.97377 * 3 2 1 7 7 C 1.38812 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99585 * 339.44326 * 7 2 1 9 9 N 1.36936 * 120.00249 * 159.44527 * 7 2 1 10 10 C 1.47083 * 120.87697 * 333.50922 * 9 7 2 11 11 C 1.53237 * 108.51888 * 231.16393 * 10 9 7 12 12 N 1.46905 * 109.33981 * 306.17385 * 11 10 9 13 13 C 1.46901 * 110.99960 * 187.25562 * 12 11 10 14 14 C 1.53005 * 109.47127 * 169.99804 * 13 12 11 15 15 N 1.46495 * 109.47005 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99897 * 179.72432 * 15 14 13 17 17 O 1.21275 * 119.99732 * 0.27187 * 16 15 14 18 18 C 1.50700 * 119.99822 * 180.27647 * 16 15 14 19 19 C 1.53003 * 109.46961 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47425 * 179.97438 * 19 18 16 21 21 C 1.53177 * 109.54302 * 294.55977 * 20 19 18 22 22 C 1.53091 * 109.16270 * 183.15011 * 21 20 19 23 23 O 1.42906 * 109.41866 * 57.60762 * 22 21 20 24 24 C 1.42903 * 114.09444 * 298.84328 * 23 22 21 25 25 C 1.53091 * 109.41542 * 61.15422 * 24 23 22 26 26 C 1.46894 * 111.27166 * 63.10264 * 12 11 10 27 27 C 1.47074 * 120.88191 * 153.48626 * 9 7 2 28 28 H 0.97002 * 119.99773 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.62721 * 111.45449 * 10 9 7 30 30 H 1.09001 * 109.79044 * 350.96796 * 10 9 7 31 31 H 1.09000 * 109.49771 * 186.21304 * 11 10 9 32 32 H 1.08997 * 109.49490 * 66.12859 * 11 10 9 33 33 H 1.09000 * 109.47042 * 49.99498 * 13 12 11 34 34 H 1.08997 * 109.46891 * 289.99975 * 13 12 11 35 35 H 1.08999 * 109.46911 * 59.99750 * 14 13 12 36 36 H 1.09001 * 109.46607 * 299.99416 * 14 13 12 37 37 H 0.96999 * 120.00282 * 359.97438 * 15 14 13 38 38 H 1.09000 * 109.46862 * 299.99537 * 18 16 15 39 39 H 1.08996 * 109.47605 * 59.99597 * 18 16 15 40 40 H 1.09003 * 109.47150 * 300.00017 * 19 18 16 41 41 H 1.09002 * 109.47080 * 59.99829 * 19 18 16 42 42 H 1.09006 * 109.54372 * 54.82078 * 20 19 18 43 43 H 1.09005 * 109.52165 * 303.05432 * 21 20 19 44 44 H 1.09000 * 109.52801 * 63.24587 * 21 20 19 45 45 H 1.09005 * 109.48360 * 297.62205 * 22 21 20 46 46 H 1.09004 * 109.48380 * 177.58438 * 22 21 20 47 47 H 1.09002 * 109.48059 * 301.17458 * 24 23 22 48 48 H 1.09003 * 109.49365 * 181.14112 * 24 23 22 49 49 H 1.09005 * 109.52664 * 182.48624 * 25 24 23 50 50 H 1.08999 * 109.52215 * 62.29726 * 25 24 23 51 51 H 1.09008 * 109.49086 * 56.85867 * 26 12 11 52 52 H 1.09000 * 109.49157 * 176.93731 * 26 12 11 53 53 H 1.08994 * 109.62907 * 248.54424 * 27 9 7 54 54 H 1.08995 * 109.62976 * 9.12641 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4692 2.6402 0.7414 6 1 3.5680 1.4284 0.6579 7 6 2.0103 -1.2022 0.0005 8 1 1.5217 -2.1075 0.3294 9 7 3.3142 -1.2402 -0.4158 10 6 3.8307 -0.2484 -1.3714 11 6 4.5271 -0.9921 -2.5159 12 7 5.5362 -1.9041 -1.9608 13 6 6.3439 -2.5085 -3.0286 14 6 7.5325 -3.2489 -2.4121 15 7 8.3376 -3.8522 -3.4770 16 6 9.4460 -4.5541 -3.1684 17 8 9.7741 -4.6905 -2.0089 18 6 10.2776 -5.1694 -4.2643 19 6 11.4697 -5.9046 -3.6481 20 6 12.3137 -6.5299 -4.7605 21 6 11.5019 -7.6184 -5.4694 22 6 12.3801 -8.2915 -6.5274 23 8 13.5482 -8.8286 -5.9036 24 6 14.3709 -7.8500 -5.2652 25 6 13.5728 -7.1591 -4.1564 26 6 4.9160 -2.9373 -1.1208 27 6 4.2355 -2.2734 0.0810 28 1 -0.4850 0.8401 -0.0004 29 1 4.5454 0.4048 -0.8707 30 1 3.0073 0.3455 -1.7681 31 1 5.0113 -0.2724 -3.1760 32 1 3.7903 -1.5646 -3.0793 33 1 6.7086 -1.7269 -3.6950 34 1 5.7316 -3.2112 -3.5938 35 1 7.1677 -4.0305 -1.7458 36 1 8.1448 -2.5461 -1.8471 37 1 8.0750 -3.7434 -4.4044 38 1 9.6686 -5.8743 -4.8302 39 1 10.6391 -4.3856 -4.9298 40 1 12.0785 -5.1994 -3.0824 41 1 11.1085 -6.6885 -2.9824 42 1 12.5989 -5.7605 -5.4781 43 1 11.1747 -8.3609 -4.7415 44 1 10.6322 -7.1699 -5.9496 45 1 12.6736 -7.5567 -7.2772 46 1 11.8211 -9.0958 -7.0057 47 1 14.6905 -7.1094 -5.9984 48 1 15.2463 -8.3359 -4.8341 49 1 14.1840 -6.3820 -3.6975 50 1 13.2874 -7.8924 -3.4021 51 1 4.1737 -3.4827 -1.7036 52 1 5.6822 -3.6283 -0.7690 53 1 4.9891 -1.8148 0.7212 54 1 3.6776 -3.0208 0.6450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316967682.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:46 Heat of formation + Delta-G solvation = -91.987773 kcal Electronic energy + Delta-G solvation = -29304.279993 eV Core-core repulsion = 25275.047507 eV Total energy + Delta-G solvation = -4029.232486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95793 -40.24216 -39.85172 -37.05380 -36.32830 -35.40152 -33.63900 -32.38792 -32.05738 -31.84365 -30.38432 -27.93174 -26.53644 -25.24969 -24.46904 -24.21543 -23.23781 -22.61317 -21.33762 -20.97587 -20.87730 -18.84857 -18.12496 -17.36525 -17.10731 -17.06013 -16.86019 -16.82976 -16.25715 -15.96318 -15.79615 -15.69222 -15.56531 -15.46355 -15.23191 -14.77102 -14.65161 -14.47331 -14.36015 -13.88318 -13.83257 -13.42143 -13.18872 -13.12440 -13.01937 -12.86627 -12.58968 -12.51671 -12.24338 -12.21178 -12.13017 -12.09815 -11.78343 -11.72978 -11.65767 -11.45226 -11.23860 -11.14931 -10.90856 -10.73326 -10.40422 -10.07894 -9.42242 -8.92181 -8.18091 -5.49925 1.28526 1.42028 1.51619 1.67952 2.09705 2.40416 2.97031 3.03010 3.08191 3.33883 3.69953 3.72245 3.81355 3.84642 4.03293 4.07195 4.11784 4.14332 4.20450 4.28063 4.30593 4.41463 4.43428 4.44123 4.49118 4.53386 4.57092 4.63233 4.67934 4.71474 4.78643 4.82839 4.84196 4.89217 4.91226 4.94529 4.95983 4.99840 5.03279 5.09550 5.19553 5.22150 5.26128 5.32390 5.43300 5.52142 5.80692 6.03451 6.06026 6.16599 6.32313 6.58647 6.87925 7.30255 7.59149 8.01615 9.01746 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.001506 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.421427 B =18587.234885 C =18629.950086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.267 1.267 7 C -0.252 4.252 8 H 0.051 0.949 9 N -0.623 5.623 10 C 0.122 3.878 11 C 0.056 3.944 12 N -0.541 5.541 13 C 0.053 3.947 14 C 0.129 3.871 15 N -0.718 5.718 16 C 0.505 3.495 17 O -0.592 6.592 18 C -0.131 4.131 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.152 4.152 22 C 0.054 3.946 23 O -0.411 6.411 24 C 0.058 3.942 25 C -0.153 4.153 26 C 0.051 3.949 27 C 0.145 3.855 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.026 0.974 52 H 0.092 0.908 53 H 0.033 0.967 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.111 -12.757 -18.853 36.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.229 4.229 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.239 1.239 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.069 0.931 9 N -0.348 5.348 10 C -0.003 4.003 11 C -0.073 4.073 12 N -0.266 5.266 13 C -0.075 4.075 14 C 0.004 3.996 15 N -0.371 5.371 16 C 0.293 3.707 17 O -0.472 6.472 18 C -0.170 4.170 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.190 4.190 22 C -0.022 4.022 23 O -0.331 6.331 24 C -0.019 4.019 25 C -0.191 4.191 26 C -0.079 4.079 27 C 0.020 3.980 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.115 0.885 49 H 0.099 0.901 50 H 0.076 0.924 51 H 0.044 0.956 52 H 0.110 0.890 53 H 0.052 0.948 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 29.548 -12.695 -17.723 36.720 hybrid contribution -1.178 0.690 -0.072 1.367 sum 28.370 -12.005 -17.795 35.576 Atomic orbital electron populations 1.69965 1.07372 1.27269 1.55679 1.25881 0.95850 1.00932 1.00246 0.85885 0.78319 0.80041 0.77934 1.19398 1.23945 1.19212 1.18880 0.86564 0.93682 1.38980 0.93077 1.44544 1.07660 1.33520 1.49098 1.21486 0.96141 0.92017 0.90652 1.22442 0.92918 0.95920 0.96006 1.61756 1.24115 1.19022 1.21701 1.22202 0.93572 0.98660 0.93021 1.21092 0.91865 0.96455 0.90146 1.45855 1.26260 1.53917 1.11077 1.21475 0.80856 0.77555 0.90802 1.90713 1.71517 1.61461 1.23523 1.21762 0.96827 1.02046 0.96408 1.21289 0.95529 0.99108 0.97276 1.21194 0.94601 0.97395 0.97020 1.22320 0.99451 0.98241 0.98948 1.22750 0.85922 0.99231 0.94295 1.87907 1.36811 1.35530 1.72834 1.22684 0.93163 0.91775 0.94232 1.22245 0.97502 1.00575 0.98745 1.22525 0.97090 0.93178 0.95066 1.21167 0.91556 0.90789 0.94508 0.92893 0.94838 0.92584 0.88164 0.95275 0.88222 0.93430 0.92878 0.92284 0.74527 0.86405 0.85997 0.92467 0.93272 0.89249 0.92388 0.88647 0.91898 0.88350 0.91979 0.88517 0.90065 0.92438 0.95565 0.88982 0.94848 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.37 13.97 21.65 0.30 -60.06 16 2 C -0.03 -2.02 5.24 84.86 0.44 -1.58 16 3 Si 0.95 46.87 24.31 68.60 1.67 48.54 16 4 H -0.27 -12.18 6.58 99.48 0.65 -11.52 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.27 -12.94 6.61 99.48 0.66 -12.28 16 7 C -0.25 -14.49 10.08 84.03 0.85 -13.65 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -29.87 2.82 -698.15 -1.97 -31.83 16 10 C 0.12 5.15 4.35 86.35 0.38 5.53 16 11 C 0.06 1.81 5.62 86.38 0.49 2.29 16 12 N -0.54 -15.63 4.63 -895.24 -4.14 -19.77 16 13 C 0.05 1.06 5.08 86.30 0.44 1.49 16 14 C 0.13 2.67 5.61 86.38 0.48 3.15 16 15 N -0.72 -10.58 5.56 -463.06 -2.57 -13.16 16 16 C 0.50 9.23 7.83 87.66 0.69 9.92 16 17 O -0.59 -17.25 15.98 -3.01 -0.05 -17.29 16 18 C -0.13 -1.18 5.47 29.85 0.16 -1.02 16 19 C -0.09 -1.18 3.98 30.59 0.12 -1.06 16 20 C -0.08 -0.72 2.27 -10.68 -0.02 -0.74 16 21 C -0.15 -1.22 5.10 30.68 0.16 -1.07 16 22 C 0.05 0.49 6.84 72.01 0.49 0.98 16 23 O -0.41 -5.97 10.77 -148.98 -1.60 -7.58 16 24 C 0.06 0.59 6.84 72.01 0.49 1.08 16 25 C -0.15 -1.58 5.42 30.68 0.17 -1.42 16 26 C 0.05 1.60 5.46 86.38 0.47 2.07 16 27 C 0.14 5.77 6.69 86.35 0.58 6.35 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.03 1.42 6.94 -2.39 -0.02 1.40 16 30 H 0.06 2.57 4.61 -2.39 -0.01 2.56 16 31 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.56 7.97 -2.39 -0.02 1.54 16 34 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.05 1.29 6.40 -2.39 -0.02 1.27 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 3.04 8.47 -92.71 -0.79 2.25 16 38 H 0.12 0.54 6.66 -2.39 -0.02 0.53 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 41 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 42 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.10 0.37 6.75 -2.39 -0.02 0.36 16 45 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.09 2.52 6.16 -2.39 -0.01 2.51 16 53 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 Total: -1.00 -77.56 406.64 -2.01 -79.56 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -0.02 Total: 9.26 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.38 Total: 12.34 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -8.38 Total: -124.83 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.65 Total: -24.87 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.67 Total: 48.54 kcal Total: -77.56 -2.01 -79.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316967682.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.426 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds