Wall clock time and date at job start Sat Apr 11 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.45080 * 2 1 4 4 C 1.47014 * 111.00325 * 183.67427 * 3 2 1 5 5 C 1.53099 * 109.26175 * 177.60954 * 4 3 2 6 6 O 1.43017 * 109.25997 * 56.84402 * 5 4 3 7 7 C 1.43016 * 113.73785 * 301.33230 * 6 5 4 8 8 C 1.47008 * 111.00110 * 60.03362 * 3 2 1 9 9 C 1.53044 * 109.45753 * 240.03374 * 2 1 3 10 10 C 1.53184 * 109.31414 * 301.34507 * 9 2 1 11 11 N 1.46928 * 108.77944 * 305.36648 * 10 9 2 12 12 C 1.34776 * 120.63113 * 233.58499 * 11 10 9 13 13 O 1.21279 * 120.00032 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99790 * 179.97438 * 12 11 10 15 15 H 1.09008 * 109.46977 * 40.00639 * 14 12 11 16 16 N 1.46904 * 109.46837 * 159.99896 * 14 12 11 17 17 C 1.52997 * 109.47721 * 280.00489 * 14 12 11 18 18 C 1.53000 * 109.47060 * 175.00208 * 17 14 12 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00636 * 23 21 19 25 25 H 1.48494 * 109.47178 * 210.00332 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00579 * 23 21 19 27 27 C 1.46930 * 118.73614 * 53.85609 * 11 10 9 28 28 C 1.53040 * 109.46199 * 119.97050 * 2 1 3 29 29 H 1.09002 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46619 * 299.96838 * 1 2 3 31 31 H 1.09004 * 109.47097 * 59.96600 * 1 2 3 32 32 H 1.09004 * 109.50361 * 297.54060 * 4 3 2 33 33 H 1.08999 * 109.51130 * 57.66640 * 4 3 2 34 34 H 1.09003 * 109.49955 * 296.90889 * 5 4 3 35 35 H 1.08997 * 109.50780 * 176.77812 * 5 4 3 36 36 H 1.09001 * 109.50748 * 298.73663 * 7 6 5 37 37 H 1.08997 * 109.54516 * 178.62694 * 7 6 5 38 38 H 1.08997 * 109.50887 * 302.33164 * 8 3 2 39 39 H 1.08996 * 109.50603 * 62.41648 * 8 3 2 40 40 H 1.09000 * 109.49719 * 181.39397 * 9 2 1 41 41 H 1.09009 * 109.52286 * 61.31351 * 9 2 1 42 42 H 1.09005 * 109.59136 * 185.57403 * 10 9 2 43 43 H 1.09006 * 109.59113 * 65.15454 * 10 9 2 44 44 H 1.00898 * 111.00551 * 296.05373 * 16 14 12 45 45 H 1.00898 * 110.99372 * 60.01160 * 16 14 12 46 46 H 1.09002 * 109.47153 * 54.99889 * 17 14 12 47 47 H 1.09001 * 109.46832 * 295.00079 * 17 14 12 48 48 H 1.09001 * 109.47194 * 299.99650 * 18 17 14 49 49 H 1.08992 * 109.47399 * 59.99823 * 18 17 14 50 50 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 51 51 H 1.08995 * 109.58494 * 65.93189 * 27 11 10 52 52 H 1.08991 * 109.58387 * 186.35772 * 27 11 10 53 53 H 1.08990 * 109.49841 * 178.60511 * 28 2 1 54 54 H 1.09004 * 109.49111 * 298.66849 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0192 1.3851 0.0000 4 6 3.4861 1.4259 -0.0880 5 6 3.9483 2.8843 -0.1452 6 8 3.4551 3.5808 1.0024 7 6 2.0298 3.5618 1.1190 8 6 1.5482 2.1102 1.1890 9 6 2.0398 -0.7208 -1.2501 10 6 1.4995 -2.1541 -1.2643 11 7 1.8625 -2.8089 -0.0001 12 6 2.5155 -3.9879 -0.0001 13 8 2.8095 -4.5182 -1.0505 14 6 2.8813 -4.6467 1.3050 15 1 2.0614 -4.5291 2.0136 16 7 3.1315 -6.0764 1.0785 17 6 4.1426 -3.9915 1.8712 18 6 4.4430 -4.5739 3.2538 19 6 5.6858 -3.9290 3.8112 20 1 6.2088 -3.1786 3.2369 21 6 6.1546 -4.2963 5.0547 22 7 5.5175 -5.2098 5.7542 23 14 7.6955 -3.4975 5.7454 24 1 7.3210 -2.2863 6.5188 25 1 8.3938 -4.4578 6.6370 26 1 8.5965 -3.1131 4.6293 27 6 1.4946 -2.1569 1.2642 28 6 2.0399 -0.7208 1.2500 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3632 0.5133 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 3.9169 0.9417 0.7885 33 1 3.8114 0.9053 -0.9887 34 1 3.5614 3.3534 -1.0498 35 1 5.0376 2.9209 -0.1527 36 1 1.5871 4.0506 0.2511 37 1 1.7310 4.0885 2.0252 38 1 0.4589 2.0892 1.2203 39 1 1.9473 1.6366 2.0859 40 1 3.1295 -0.7429 -1.2384 41 1 1.6962 -0.1936 -2.1402 42 1 1.9381 -2.7018 -2.0985 43 1 0.4146 -2.1347 -1.3674 44 1 2.2945 -6.5449 0.7654 45 1 3.8879 -6.2119 0.4246 46 1 3.9867 -2.9161 1.9559 47 1 4.9831 -4.1854 1.2048 48 1 3.6025 -4.3800 3.9202 49 1 4.5989 -5.6493 3.1690 50 1 5.8471 -5.4679 6.6292 51 1 0.4093 -2.1377 1.3631 52 1 1.9300 -2.7063 2.0988 53 1 3.1296 -0.7429 1.2382 54 1 1.6963 -0.1931 2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352850914.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:40 Heat of formation + Delta-G solvation = -98.342807 kcal Electronic energy + Delta-G solvation = -32151.218453 eV Core-core repulsion = 28121.710392 eV Total energy + Delta-G solvation = -4029.508061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.02265 -40.78588 -39.02558 -36.93333 -36.45204 -34.86769 -33.19992 -32.58680 -31.98839 -31.89284 -29.13808 -28.20307 -27.70782 -25.98742 -24.92832 -24.56915 -23.76157 -22.28234 -21.75513 -20.66025 -19.07716 -18.70418 -18.34242 -17.58736 -17.25589 -17.14118 -16.83477 -16.47799 -16.33524 -16.06052 -15.89937 -15.69984 -15.58001 -15.28530 -15.21701 -14.83770 -14.57257 -14.29949 -14.18169 -13.83272 -13.52260 -13.38651 -13.15345 -12.93212 -12.88579 -12.80352 -12.73250 -12.53976 -12.50846 -12.38678 -12.26870 -11.90649 -11.84803 -11.76656 -11.63637 -11.41495 -11.26391 -11.23804 -10.99787 -10.64262 -10.51333 -9.73855 -9.64633 -9.31715 -8.16183 -6.26330 1.38871 1.40180 1.43963 1.50994 1.94056 2.41958 2.67572 2.96922 3.16934 3.37610 3.59010 3.65725 3.67292 3.87860 3.93682 3.99601 4.04390 4.06771 4.12708 4.23138 4.24680 4.25880 4.28600 4.34422 4.48772 4.57677 4.59132 4.65627 4.67957 4.72499 4.77749 4.83063 4.84400 4.87719 4.88239 4.93554 4.98734 5.03870 5.11659 5.18289 5.20343 5.40569 5.50706 5.53643 5.80491 5.94886 5.95345 6.01769 6.05181 6.20022 6.26662 6.28500 6.48310 6.91284 7.02418 7.41790 8.94965 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003842 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.784396 B = 7286.744068 C = 9634.580947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.116 3.884 3 N -0.518 5.518 4 C 0.011 3.989 5 C 0.066 3.934 6 O -0.410 6.410 7 C 0.061 3.939 8 C 0.010 3.990 9 C -0.114 4.114 10 C 0.110 3.890 11 N -0.602 5.602 12 C 0.488 3.512 13 O -0.583 6.583 14 C 0.085 3.915 15 H 0.108 0.892 16 N -0.818 5.818 17 C -0.078 4.078 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.051 0.949 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.955 3.045 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.105 3.895 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.035 0.965 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.347 0.653 45 H 0.345 0.655 46 H 0.060 0.940 47 H 0.038 0.962 48 H -0.005 1.005 49 H 0.006 0.994 50 H 0.263 0.737 51 H 0.100 0.900 52 H 0.081 0.919 53 H 0.047 0.953 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 16.687 -13.738 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 N -0.242 5.242 4 C -0.117 4.117 5 C -0.011 4.011 6 O -0.329 6.329 7 C -0.015 4.015 8 C -0.118 4.118 9 C -0.152 4.152 10 C -0.013 4.013 11 N -0.334 5.334 12 C 0.275 3.725 13 O -0.463 6.463 14 C -0.031 4.031 15 H 0.126 0.874 16 N -0.347 5.347 17 C -0.116 4.116 18 C 0.006 3.994 19 C -0.581 4.581 20 H 0.069 0.931 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.018 4.018 28 C -0.198 4.198 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.013 0.987 49 H 0.024 0.976 50 H 0.071 0.929 51 H 0.118 0.882 52 H 0.099 0.901 53 H 0.066 0.934 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.196 16.631 -13.634 25.768 hybrid contribution 1.118 -0.371 0.243 1.203 sum -13.078 16.260 -13.390 24.793 Atomic orbital electron populations 1.21980 0.91558 1.02786 1.03346 1.21033 0.96732 0.86372 0.93170 1.62567 1.08967 1.13477 1.39226 1.22848 0.88936 0.98318 1.01607 1.22719 0.99735 0.89979 0.88678 1.87974 1.22683 1.75375 1.46857 1.22819 0.80178 0.95297 1.03247 1.22944 1.02429 0.94990 0.91402 1.21939 1.00204 0.94329 0.98739 1.21736 1.01085 0.92515 0.85917 1.48259 1.56293 1.20541 1.08315 1.22333 0.76227 0.81355 0.92560 1.90617 1.55988 1.65072 1.34645 1.21637 1.00042 0.88907 0.92507 0.87442 1.58985 1.12114 1.08606 1.55005 1.21363 0.93975 0.98517 0.97751 1.18790 0.94455 0.95738 0.90420 1.21666 1.11662 1.22422 1.02365 0.93063 1.25830 1.00222 0.95622 0.97485 1.70090 1.41543 1.32240 1.12859 0.85603 0.79614 0.78401 0.78365 1.19670 1.20718 1.19316 1.22045 1.01618 0.92946 0.85192 1.22627 1.00648 0.96080 1.00449 0.91144 0.91430 0.90843 0.95542 0.89106 0.91362 0.88086 0.91531 0.87272 0.87330 0.94719 0.93119 0.88358 0.90732 0.88882 0.83980 0.84196 0.92094 0.94355 0.98689 0.97559 0.92861 0.88162 0.90067 0.93409 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.48 71.98 0.54 -1.09 16 2 C 0.12 1.87 0.45 3.56 0.00 1.88 16 3 N -0.52 -8.62 4.54 -845.56 -3.84 -12.46 16 4 C 0.01 0.22 4.87 86.31 0.42 0.64 16 5 C 0.07 1.18 7.01 72.02 0.50 1.68 16 6 O -0.41 -8.73 10.83 -148.98 -1.61 -10.35 16 7 C 0.06 0.93 7.01 72.02 0.50 1.44 16 8 C 0.01 0.15 4.87 86.32 0.42 0.57 16 9 C -0.11 -1.99 4.51 30.67 0.14 -1.85 16 10 C 0.11 2.19 5.96 86.36 0.51 2.70 16 11 N -0.60 -14.64 2.97 -818.08 -2.43 -17.06 16 12 C 0.49 15.38 6.94 87.66 0.61 15.99 16 13 O -0.58 -21.48 15.66 -3.03 -0.05 -21.53 16 14 C 0.08 2.88 2.29 44.17 0.10 2.98 16 15 H 0.11 3.41 6.78 -2.38 -0.02 3.40 16 16 N -0.82 -28.24 8.44 -171.79 -1.45 -29.69 16 17 C -0.08 -3.20 4.46 30.59 0.14 -3.07 16 18 C 0.04 2.25 4.86 29.85 0.15 2.40 16 19 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 20 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 21 C 0.01 0.38 5.46 84.66 0.46 0.84 16 22 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 23 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 C 0.10 2.20 5.32 86.51 0.46 2.66 16 28 C -0.16 -3.22 4.22 30.82 0.13 -3.09 16 29 H 0.07 0.78 4.97 -2.39 -0.01 0.77 16 30 H 0.07 0.69 6.35 -2.39 -0.02 0.68 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.03 0.64 6.56 -2.39 -0.02 0.62 16 33 H 0.09 1.69 6.14 -2.39 -0.01 1.67 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.22 6.19 -2.39 -0.01 1.21 16 39 H 0.03 0.65 6.41 -2.39 -0.02 0.63 16 40 H 0.05 1.09 6.38 -2.39 -0.02 1.08 16 41 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.07 1.79 7.01 -2.38 -0.02 1.78 16 43 H 0.09 1.42 6.69 -2.38 -0.02 1.40 16 44 H 0.35 10.22 9.06 -89.70 -0.81 9.41 16 45 H 0.34 12.23 8.58 -89.70 -0.77 11.46 16 46 H 0.06 2.38 6.99 -2.39 -0.02 2.36 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 50 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.10 1.57 6.69 -2.39 -0.02 1.55 16 52 H 0.08 2.04 4.85 -2.39 -0.01 2.03 16 53 H 0.05 1.25 6.61 -2.39 -0.02 1.23 16 54 H 0.08 1.64 6.39 -2.38 -0.02 1.62 16 Total: -1.00 -70.68 392.98 -2.40 -73.08 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.66 Total: 33.53 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.32 Total: -6.11 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -7.43 Total: -115.34 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.66 Total: -31.88 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.68 -2.40 -73.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352850914.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.264 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds