Wall clock time and date at job start Sat Apr 11 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.44525 * 2 1 4 4 C 1.47017 * 110.99716 * 183.66722 * 3 2 1 5 5 C 1.53100 * 109.25663 * 177.60980 * 4 3 2 6 6 O 1.43017 * 109.25991 * 56.84762 * 5 4 3 7 7 C 1.43015 * 113.73592 * 301.33085 * 6 5 4 8 8 C 1.47009 * 111.00045 * 60.03423 * 3 2 1 9 9 C 1.53043 * 109.46454 * 240.03881 * 2 1 3 10 10 C 1.53191 * 109.30576 * 301.34239 * 9 2 1 11 11 N 1.46926 * 108.77803 * 305.36032 * 10 9 2 12 12 C 1.34771 * 120.63531 * 233.58987 * 11 10 9 13 13 O 1.21279 * 120.00116 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00127 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.47060 * 319.99931 * 14 12 11 16 16 N 1.46901 * 109.46921 * 199.99750 * 14 12 11 17 17 C 1.53002 * 109.47419 * 80.00012 * 14 12 11 18 18 C 1.52997 * 109.47469 * 184.99997 * 17 14 12 19 19 C 1.50699 * 109.47339 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99742 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00224 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00088 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46928 * 59.99450 * 23 21 19 25 25 H 1.48497 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46687 * 299.99674 * 23 21 19 27 27 C 1.46935 * 118.73479 * 53.86581 * 11 10 9 28 28 C 1.53035 * 109.46251 * 119.96187 * 2 1 3 29 29 H 1.09003 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47466 * 299.96338 * 1 2 3 31 31 H 1.09001 * 109.46893 * 59.96932 * 1 2 3 32 32 H 1.09004 * 109.50973 * 297.53887 * 4 3 2 33 33 H 1.09001 * 109.50732 * 57.67726 * 4 3 2 34 34 H 1.09003 * 109.50882 * 296.91553 * 5 4 3 35 35 H 1.08999 * 109.50824 * 176.78507 * 5 4 3 36 36 H 1.08995 * 109.51117 * 298.73220 * 7 6 5 37 37 H 1.09000 * 109.53782 * 178.62407 * 7 6 5 38 38 H 1.09003 * 109.50715 * 302.32950 * 8 3 2 39 39 H 1.09005 * 109.50794 * 62.40986 * 8 3 2 40 40 H 1.08992 * 109.49899 * 181.39430 * 9 2 1 41 41 H 1.08999 * 109.52403 * 61.30466 * 9 2 1 42 42 H 1.09005 * 109.58185 * 185.57770 * 10 9 2 43 43 H 1.08994 * 109.70711 * 65.22458 * 10 9 2 44 44 H 1.00901 * 110.99547 * 176.04411 * 16 14 12 45 45 H 1.00898 * 111.00245 * 299.99784 * 16 14 12 46 46 H 1.09008 * 109.46873 * 305.00091 * 17 14 12 47 47 H 1.08997 * 109.47047 * 64.99780 * 17 14 12 48 48 H 1.08997 * 109.47151 * 300.00410 * 18 17 14 49 49 H 1.09006 * 109.46918 * 59.99351 * 18 17 14 50 50 H 0.96998 * 120.00384 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.58505 * 65.92362 * 27 11 10 52 52 H 1.08999 * 109.58292 * 186.35100 * 27 11 10 53 53 H 1.08995 * 109.50191 * 178.60540 * 28 2 1 54 54 H 1.08997 * 109.49963 * 298.68175 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0190 1.3853 0.0000 4 6 3.4860 1.4260 -0.0878 5 6 3.9481 2.8845 -0.1450 6 8 3.4548 3.5810 1.0026 7 6 2.0295 3.5619 1.1189 8 6 1.5480 2.1103 1.1890 9 6 2.0399 -0.7206 -1.2501 10 6 1.4997 -2.1540 -1.2643 11 7 1.8627 -2.8088 -0.0001 12 6 2.5158 -3.9877 0.0000 13 8 2.8091 -4.5185 -1.0503 14 6 2.8807 -4.6470 1.3051 15 1 3.2160 -3.8894 2.0135 16 7 3.9599 -5.6175 1.0785 17 6 1.6564 -5.3688 1.8717 18 6 1.9910 -5.9321 3.2543 19 6 0.7849 -6.6426 3.8126 20 1 -0.1289 -6.6874 3.2389 21 6 0.8479 -7.2344 5.0563 22 7 1.9607 -7.1793 5.7552 23 14 -0.6468 -8.1156 5.7481 24 1 -1.0301 -9.2270 4.8408 25 1 -0.3221 -8.6622 7.0901 26 1 -1.7764 -7.1585 5.8631 27 6 1.4947 -2.1568 1.2643 28 6 2.0399 -0.7206 1.2501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 3.9167 0.9420 0.7888 33 1 3.8113 0.9056 -0.9886 34 1 3.5612 3.3537 -1.0496 35 1 5.0374 2.9212 -0.1526 36 1 1.5868 4.0507 0.2512 37 1 1.7307 4.0886 2.0252 38 1 0.4586 2.0892 1.2203 39 1 1.9471 1.6366 2.0860 40 1 3.1296 -0.7427 -1.2383 41 1 1.6963 -0.1935 -2.1401 42 1 1.9384 -2.7016 -2.0985 43 1 0.4149 -2.1369 -1.3686 44 1 4.2669 -6.0265 1.9483 45 1 3.6735 -6.3307 0.4248 46 1 0.8273 -4.6662 1.9565 47 1 1.3749 -6.1842 1.2055 48 1 2.8200 -6.6346 3.1695 49 1 2.2727 -5.1166 3.9205 50 1 2.0049 -7.5954 6.6303 51 1 0.4094 -2.1377 1.3631 52 1 1.9301 -2.7063 2.0989 53 1 3.1295 -0.7427 1.2383 54 1 1.6961 -0.1931 2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352850915.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:46 Heat of formation + Delta-G solvation = -97.587236 kcal Electronic energy + Delta-G solvation = -31723.207988 eV Core-core repulsion = 27693.732692 eV Total energy + Delta-G solvation = -4029.475297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.97498 -40.72720 -38.98934 -37.16566 -36.40262 -34.87762 -33.18657 -32.57316 -31.90898 -31.71527 -29.18356 -28.17239 -27.69140 -26.08896 -24.95521 -24.57635 -23.77599 -22.35393 -21.70017 -20.57787 -19.26778 -18.75228 -18.33847 -17.56270 -17.19650 -17.09530 -16.55523 -16.36621 -16.06492 -15.95069 -15.83136 -15.68998 -15.57344 -15.50833 -15.09488 -14.91946 -14.62753 -14.50377 -14.18038 -13.84912 -13.58341 -13.38239 -13.14910 -12.96875 -12.90059 -12.82658 -12.72171 -12.60914 -12.54980 -12.48477 -12.36332 -11.88810 -11.82717 -11.82344 -11.67969 -11.40155 -11.32580 -11.24351 -10.68849 -10.62126 -10.56569 -9.75863 -9.63847 -9.28914 -8.22122 -6.32760 1.39448 1.40994 1.48862 1.55414 1.91076 2.39222 2.68683 2.98460 3.11499 3.40159 3.61615 3.65935 3.73823 3.88500 3.95720 4.02320 4.04206 4.08400 4.14137 4.19157 4.25498 4.26600 4.30951 4.36191 4.49038 4.59978 4.61246 4.63033 4.68164 4.74068 4.79489 4.81539 4.85026 4.86406 4.87471 4.94432 4.99887 5.04862 5.05434 5.13530 5.18914 5.41213 5.44705 5.53729 5.62639 5.78756 5.97922 6.02444 6.02764 6.19514 6.21277 6.32519 6.43613 6.82202 7.12528 7.36476 8.88430 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002672 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.225928 B =10476.945531 C =11306.638679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.117 3.883 3 N -0.521 5.521 4 C 0.012 3.988 5 C 0.065 3.935 6 O -0.409 6.409 7 C 0.062 3.938 8 C 0.010 3.990 9 C -0.111 4.111 10 C 0.111 3.889 11 N -0.605 5.605 12 C 0.527 3.473 13 O -0.572 6.572 14 C 0.080 3.920 15 H 0.103 0.897 16 N -0.831 5.831 17 C -0.119 4.119 18 C 0.033 3.967 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.958 3.042 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.266 1.266 27 C 0.105 3.895 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.352 0.648 45 H 0.344 0.656 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.001 0.999 49 H 0.001 0.999 50 H 0.264 0.736 51 H 0.089 0.911 52 H 0.081 0.919 53 H 0.057 0.943 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 22.634 -12.095 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 N -0.245 5.245 4 C -0.116 4.116 5 C -0.012 4.012 6 O -0.328 6.328 7 C -0.015 4.015 8 C -0.117 4.117 9 C -0.149 4.149 10 C -0.012 4.012 11 N -0.338 5.338 12 C 0.315 3.685 13 O -0.451 6.451 14 C -0.035 4.035 15 H 0.121 0.879 16 N -0.362 5.362 17 C -0.159 4.159 18 C -0.004 4.004 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.783 3.217 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.018 4.018 28 C -0.195 4.195 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.167 0.833 45 H 0.157 0.843 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.019 0.981 49 H 0.020 0.980 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.100 0.900 53 H 0.076 0.924 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.559 23.286 -13.068 26.748 hybrid contribution -0.826 -2.096 1.691 2.817 sum -2.385 21.190 -11.377 24.169 Atomic orbital electron populations 1.21990 0.92175 1.02530 1.03246 1.21002 0.96363 0.86507 0.93412 1.62543 1.09326 1.13287 1.39313 1.22868 0.88609 0.98293 1.01875 1.22741 0.99862 0.90023 0.88572 1.87966 1.22492 1.75452 1.46856 1.22794 0.80269 0.95234 1.03163 1.22934 1.02292 0.95016 0.91497 1.21920 1.00495 0.93839 0.98662 1.21718 1.00858 0.92799 0.85787 1.48100 1.56778 1.20568 1.08354 1.20701 0.76226 0.80804 0.90766 1.90602 1.55425 1.64601 1.34497 1.21422 0.92378 0.96155 0.93514 0.87937 1.58769 1.37739 1.22113 1.17585 1.22129 0.96846 0.99134 0.97773 1.18935 0.95697 0.94791 0.90998 1.21568 0.99125 1.35137 1.02435 0.92651 1.25857 0.98901 0.97016 0.97443 1.70054 1.28011 1.45594 1.12985 0.85608 0.79678 0.79014 0.77416 1.19689 1.20883 1.19053 1.22029 1.01394 0.93150 0.85218 1.22621 1.00939 0.95528 1.00387 0.91656 0.91532 0.90926 0.94953 0.88970 0.91713 0.87688 0.91805 0.87276 0.87822 0.94358 0.92378 0.88424 0.90550 0.89586 0.83290 0.84291 0.91518 0.93766 0.98113 0.98050 0.92722 0.89293 0.90036 0.92447 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.48 71.98 0.54 -1.29 16 2 C 0.12 1.78 0.45 3.55 0.00 1.78 16 3 N -0.52 -7.72 4.54 -845.54 -3.84 -11.56 16 4 C 0.01 0.18 4.87 86.31 0.42 0.60 16 5 C 0.06 0.95 7.01 72.02 0.50 1.46 16 6 O -0.41 -7.49 10.83 -148.98 -1.61 -9.11 16 7 C 0.06 0.83 7.01 72.01 0.50 1.33 16 8 C 0.01 0.14 4.87 86.31 0.42 0.56 16 9 C -0.11 -1.85 4.51 30.67 0.14 -1.71 16 10 C 0.11 2.33 5.96 86.36 0.51 2.84 16 11 N -0.60 -15.48 2.97 -818.05 -2.43 -17.91 16 12 C 0.53 17.61 6.95 87.66 0.61 18.22 16 13 O -0.57 -22.60 15.66 -3.03 -0.05 -22.64 16 14 C 0.08 2.77 2.35 44.17 0.10 2.88 16 15 H 0.10 3.39 6.55 -2.39 -0.02 3.37 16 16 N -0.83 -29.50 8.94 -171.79 -1.54 -31.04 16 17 C -0.12 -4.65 4.54 30.59 0.14 -4.51 16 18 C 0.03 1.61 4.74 29.85 0.14 1.75 16 19 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16 20 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 21 C 0.01 0.36 5.46 84.65 0.46 0.82 16 22 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 23 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.10 2.29 5.14 86.51 0.44 2.73 16 28 C -0.16 -2.83 4.22 30.82 0.13 -2.70 16 29 H 0.06 0.90 4.97 -2.39 -0.01 0.89 16 30 H 0.07 0.77 6.35 -2.39 -0.02 0.75 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 0.61 6.56 -2.39 -0.02 0.60 16 33 H 0.09 1.39 6.14 -2.39 -0.01 1.38 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.12 6.19 -2.39 -0.01 1.11 16 39 H 0.04 0.61 6.41 -2.38 -0.02 0.59 16 40 H 0.06 1.12 6.38 -2.39 -0.02 1.10 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.91 7.01 -2.38 -0.02 1.89 16 43 H 0.09 1.53 6.70 -2.39 -0.02 1.52 16 44 H 0.35 12.61 7.55 -89.69 -0.68 11.93 16 45 H 0.34 12.42 8.58 -89.70 -0.77 11.65 16 46 H 0.07 2.45 7.18 -2.38 -0.02 2.43 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 49 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 50 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.09 1.73 6.69 -2.39 -0.02 1.71 16 52 H 0.08 2.03 5.17 -2.39 -0.01 2.02 16 53 H 0.06 1.22 6.62 -2.39 -0.02 1.20 16 54 H 0.09 1.46 6.38 -2.39 -0.02 1.44 16 Total: -1.00 -66.57 391.23 -2.37 -68.93 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.52 Total: 36.74 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.31 Total: -4.62 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -7.52 Total: -114.26 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.66 Total: -31.75 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.57 -2.37 -68.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352850915.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.652 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds