Wall clock time and date at job start Sat Apr 11 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.24316 * 2 1 4 4 C 1.54841 * 109.36367 * 240.33865 * 2 1 3 5 5 C 1.50123 * 110.81526 * 200.92899 * 4 2 1 6 6 H 1.08994 * 110.37167 * 338.64195 * 5 4 2 7 7 N 1.46503 * 110.24763 * 216.65354 * 5 4 2 8 8 C 1.34770 * 120.00278 * 159.01805 * 7 5 4 9 9 O 1.21284 * 119.99697 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00354 * 180.02562 * 8 7 5 11 11 C 1.53002 * 109.47058 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46773 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46773 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47058 * 180.02562 * 13 12 11 15 15 N 1.34777 * 120.00063 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99949 * 359.97438 * 14 13 12 17 17 C 1.52524 * 105.41391 * 97.68602 * 5 4 2 18 18 C 1.46240 * 114.27368 * 270.58457 * 17 5 4 19 19 N 1.50171 * 107.52838 * 58.41435 * 18 17 5 20 20 C 1.36939 * 120.53616 * 109.56894 * 19 18 17 21 21 H 1.07997 * 120.00169 * 156.68042 * 20 19 18 22 22 C 1.38816 * 119.99945 * 336.67257 * 20 19 18 23 23 N 1.31611 * 120.00142 * 340.41761 * 22 20 19 24 24 Si 1.86800 * 119.99793 * 160.41708 * 22 20 19 25 25 H 1.48503 * 109.47420 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47212 * 120.00088 * 24 22 20 27 27 H 1.48496 * 109.47309 * 240.00467 * 24 22 20 28 28 C 1.43431 * 118.92557 * 289.58577 * 19 18 17 29 29 H 1.09002 * 109.47690 * 300.34130 * 1 2 3 30 30 H 1.08999 * 109.47118 * 60.34653 * 1 2 3 31 31 H 1.09002 * 109.47225 * 180.34377 * 1 2 3 32 32 H 1.09005 * 109.46897 * 179.65594 * 3 2 1 33 33 H 1.08998 * 109.46961 * 299.65461 * 3 2 1 34 34 H 1.08997 * 109.47627 * 59.65720 * 3 2 1 35 35 H 1.08998 * 109.20876 * 80.57814 * 4 2 1 36 36 H 1.09005 * 109.20907 * 321.27359 * 4 2 1 37 37 H 0.97008 * 119.99692 * 339.02292 * 7 5 4 38 38 H 1.09000 * 109.47240 * 60.00180 * 10 8 7 39 39 H 1.08997 * 109.47044 * 299.99864 * 10 8 7 40 40 H 1.08996 * 109.47225 * 60.00418 * 11 10 8 41 41 H 1.08997 * 109.47160 * 299.99888 * 11 10 8 42 42 H 1.09000 * 109.47154 * 60.00503 * 12 11 10 43 43 H 1.08997 * 109.47415 * 300.00012 * 12 11 10 44 44 H 1.09000 * 109.46870 * 60.00329 * 13 12 11 45 45 H 1.09004 * 109.47492 * 300.00381 * 13 12 11 46 46 H 0.96998 * 120.00161 * 0.02562 * 15 14 13 47 47 H 0.97002 * 119.99521 * 179.71991 * 15 14 13 48 48 H 1.08998 * 108.52966 * 31.82846 * 17 5 4 49 49 H 1.09004 * 108.52453 * 149.34855 * 17 5 4 50 50 H 1.09001 * 109.84215 * 177.91514 * 18 17 5 51 51 H 1.08989 * 109.85231 * 298.83813 * 18 17 5 52 52 H 0.96995 * 119.99987 * 179.97438 * 23 22 20 53 53 H 1.08998 * 108.15844 * 213.28636 * 28 19 18 54 54 H 1.08998 * 108.15953 * 330.05914 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0342 1.4445 0.0000 4 6 2.0434 -0.7229 -1.2694 5 6 3.4568 -1.1925 -1.0811 6 1 3.9424 -0.6252 -0.2872 7 7 4.2071 -1.0567 -2.3320 8 6 5.5537 -1.0081 -2.3082 9 8 6.1444 -1.0763 -1.2512 10 6 6.3255 -0.8678 -3.5950 11 6 7.8245 -0.8371 -3.2898 12 6 8.6081 -0.6953 -4.5963 13 6 10.1071 -0.6653 -4.2912 14 6 10.8789 -0.5250 -5.5779 15 7 12.2256 -0.4769 -5.5541 16 8 10.2882 -0.4563 -6.6349 17 6 3.3467 -2.6622 -0.6885 18 6 3.2340 -2.8932 0.7512 19 7 2.0174 -2.1567 1.2334 20 6 0.9010 -2.8427 1.6315 21 1 0.1964 -2.3817 2.3077 22 6 0.6750 -4.1307 1.1656 23 7 1.2846 -4.5538 0.0786 24 14 -0.4943 -5.2634 2.0816 25 1 -1.0475 -4.5535 3.2629 26 1 -1.6047 -5.6626 1.1799 27 1 0.2390 -6.4743 2.5299 28 6 2.0434 -0.7231 1.2700 29 1 -0.3634 0.5191 0.8869 30 1 -0.3633 0.5084 -0.8931 31 1 -0.3634 -1.0277 0.0062 32 1 3.1242 1.4488 0.0062 33 1 1.6739 1.9551 -0.8931 34 1 1.6639 1.9587 0.8868 35 1 2.0033 -0.0356 -2.1144 36 1 1.4046 -1.5817 -1.4761 37 1 3.7346 -1.0017 -3.1774 38 1 6.0374 0.0583 -4.0924 39 1 6.1041 -1.7138 -4.2455 40 1 8.1130 -1.7630 -2.7922 41 1 8.0456 0.0091 -2.6394 42 1 8.3197 0.2304 -5.0943 43 1 8.3869 -1.5418 -5.2464 44 1 10.3951 -1.5912 -3.7934 45 1 10.3287 0.1810 -3.6408 46 1 12.6981 -0.5330 -4.7088 47 1 12.7225 -0.3907 -6.3827 48 1 2.4696 -3.0865 -1.1770 49 1 4.2299 -3.1856 -1.0550 50 1 3.1228 -3.9596 0.9472 51 1 4.1218 -2.5146 1.2574 52 1 1.1270 -5.4538 -0.2466 53 1 1.4398 -0.3938 2.1158 54 1 3.0715 -0.4064 1.4455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479747919.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:04 Heat of formation + Delta-G solvation = -102.884832 kcal Electronic energy + Delta-G solvation = -30759.657378 eV Core-core repulsion = 26729.952360 eV Total energy + Delta-G solvation = -4029.705018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.18914 -40.46281 -39.67625 -36.33830 -36.08525 -35.73711 -34.58981 -33.31728 -32.49364 -31.31702 -29.07841 -28.03150 -27.30319 -26.52857 -25.03033 -23.41011 -22.45738 -21.53230 -21.26991 -21.11586 -19.43629 -18.56626 -18.17674 -17.83219 -17.43456 -17.14107 -17.02539 -16.80541 -16.19897 -15.86102 -15.45683 -15.25762 -15.22319 -14.89276 -14.83047 -14.56627 -14.20017 -13.85606 -13.52133 -13.45117 -13.37023 -13.24056 -13.03250 -12.87607 -12.69458 -12.52169 -12.50073 -12.32836 -12.23126 -12.17780 -12.03558 -11.89592 -11.63622 -11.49618 -11.46653 -11.39507 -11.11671 -10.99885 -10.98083 -10.63844 -10.60416 -10.45330 -9.81632 -8.61440 -7.78219 -5.17696 1.46700 1.51373 1.58914 1.69934 1.79679 2.34739 2.56472 2.72447 3.34561 3.58766 3.83635 3.90535 4.01031 4.06170 4.08119 4.10444 4.10811 4.42709 4.45363 4.50803 4.55633 4.57268 4.66343 4.77142 4.80974 4.84201 4.89791 4.91059 4.92004 4.95636 5.01451 5.10105 5.12383 5.14778 5.23448 5.28433 5.35034 5.37041 5.38268 5.48863 5.51811 5.55488 5.67190 5.70295 5.78771 5.84330 5.94490 6.10493 6.45666 6.51386 6.73975 7.20457 7.40427 7.43600 7.93739 8.46482 9.26468 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.002201 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.940729 B =12720.394170 C =13665.108211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.091 4.091 5 C 0.163 3.837 6 H 0.066 0.934 7 N -0.715 5.715 8 C 0.504 3.496 9 O -0.588 6.588 10 C -0.133 4.133 11 C -0.097 4.097 12 C -0.098 4.098 13 C -0.140 4.140 14 C 0.511 3.489 15 N -0.842 5.842 16 O -0.598 6.598 17 C -0.115 4.115 18 C 0.174 3.826 19 N -0.595 5.595 20 C -0.243 4.243 21 H 0.063 0.937 22 C -0.044 4.044 23 N -0.916 5.916 24 Si 0.952 3.048 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.297 1.297 28 C 0.163 3.837 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.410 0.590 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.418 0.582 47 H 0.404 0.596 48 H 0.077 0.923 49 H 0.015 0.985 50 H 0.058 0.942 51 H 0.005 0.995 52 H 0.245 0.755 53 H 0.029 0.971 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.685 11.660 -10.163 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 C -0.184 4.184 4 C -0.129 4.129 5 C 0.059 3.941 6 H 0.084 0.916 7 N -0.366 5.366 8 C 0.292 3.708 9 O -0.468 6.468 10 C -0.173 4.173 11 C -0.135 4.135 12 C -0.136 4.136 13 C -0.180 4.180 14 C 0.298 3.702 15 N -0.405 5.405 16 O -0.479 6.479 17 C -0.155 4.155 18 C 0.050 3.950 19 N -0.317 5.317 20 C -0.373 4.373 21 H 0.081 0.919 22 C -0.239 4.239 23 N -0.563 5.563 24 Si 0.782 3.218 25 H -0.198 1.198 26 H -0.223 1.223 27 H -0.224 1.224 28 C 0.035 3.965 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.246 0.754 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.249 0.751 47 H 0.235 0.765 48 H 0.095 0.905 49 H 0.034 0.966 50 H 0.076 0.924 51 H 0.023 0.977 52 H 0.054 0.946 53 H 0.048 0.952 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.553 11.483 -10.000 21.766 hybrid contribution -0.521 -1.262 0.196 1.379 sum 15.032 10.221 -9.804 20.653 Atomic orbital electron populations 1.21644 0.94724 1.00677 1.00767 1.21854 0.95841 0.95219 0.96123 1.21750 1.00167 0.94286 1.02179 1.21618 0.93825 0.99653 0.97831 1.20024 0.92048 0.95961 0.86107 0.91621 1.46196 1.06513 1.73801 1.10094 1.21436 0.82436 0.74748 0.92157 1.90672 1.69782 1.51669 1.34676 1.21719 0.95623 1.06123 0.93828 1.21259 0.92350 1.02766 0.97111 1.21263 0.93045 1.02911 0.96423 1.21710 0.95193 1.06356 0.94702 1.21169 0.83544 0.74047 0.91471 1.43815 1.06552 1.75982 1.14169 1.90733 1.70335 1.52108 1.34703 1.21090 1.00211 0.95204 0.98999 1.19901 0.85539 0.97062 0.92487 1.44295 1.11247 1.00488 1.75622 1.19323 1.00864 0.97295 1.19820 0.91946 1.25452 1.00871 1.00582 0.97039 1.70111 1.47406 1.17318 1.21448 0.85440 0.78539 0.79285 0.78517 1.19834 1.22331 1.22438 1.20611 0.97189 0.83784 0.94890 0.93041 0.92439 0.94718 0.93651 0.91509 0.92222 0.90917 0.93419 0.75371 0.86543 0.87453 0.92320 0.91586 0.91524 0.92030 0.87010 0.86658 0.75052 0.76495 0.90510 0.96628 0.92351 0.97709 0.94574 0.95243 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.29 71.98 0.60 -3.51 16 2 C -0.09 -2.96 0.76 -50.91 -0.04 -3.00 16 3 C -0.13 -3.41 8.20 71.98 0.59 -2.82 16 4 C -0.09 -3.15 4.15 30.30 0.13 -3.03 16 5 C 0.16 5.95 2.10 43.91 0.09 6.05 16 6 H 0.07 2.67 5.29 -2.39 -0.01 2.66 16 7 N -0.72 -20.62 5.01 -447.73 -2.24 -22.86 16 8 C 0.50 14.74 7.68 87.66 0.67 15.42 16 9 O -0.59 -22.55 15.70 -3.04 -0.05 -22.60 16 10 C -0.13 -2.54 5.70 29.85 0.17 -2.37 16 11 C -0.10 -1.79 4.50 30.60 0.14 -1.66 16 12 C -0.10 -1.55 4.50 30.60 0.14 -1.41 16 13 C -0.14 -1.61 5.70 29.85 0.17 -1.44 16 14 C 0.51 7.90 8.10 87.66 0.71 8.61 16 15 N -0.84 -6.15 8.87 -173.53 -1.54 -7.69 16 16 O -0.60 -15.30 16.82 -3.04 -0.05 -15.35 16 17 C -0.12 -5.16 4.73 28.36 0.13 -5.03 16 18 C 0.17 8.65 5.24 83.58 0.44 9.09 16 19 N -0.60 -29.13 2.60 -707.85 -1.84 -30.97 16 20 C -0.24 -12.89 8.94 84.03 0.75 -12.14 16 21 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 22 C -0.04 -2.37 4.91 84.86 0.42 -1.95 16 23 N -0.92 -51.11 9.42 21.65 0.20 -50.91 16 24 Si 0.95 44.61 29.60 68.60 2.03 46.64 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 28 C 0.16 6.75 4.01 87.60 0.35 7.10 16 29 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.43 7.45 -2.39 -0.02 1.41 16 32 H 0.04 1.26 7.57 -2.38 -0.02 1.24 16 33 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 2.04 7.63 -2.39 -0.02 2.02 16 36 H 0.05 2.00 6.66 -2.38 -0.02 1.99 16 37 H 0.41 9.12 8.45 -92.70 -0.78 8.34 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.42 0.33 8.83 -92.71 -0.82 -0.49 16 47 H 0.40 2.56 8.93 -92.71 -0.83 1.73 16 48 H 0.08 3.86 5.29 -2.39 -0.01 3.85 16 49 H 0.02 0.70 7.90 -2.38 -0.02 0.68 16 50 H 0.06 3.25 6.05 -2.39 -0.01 3.24 16 51 H 0.00 0.24 8.13 -2.39 -0.02 0.22 16 52 H 0.24 13.48 8.31 -92.71 -0.77 12.71 16 53 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 54 H 0.03 1.13 6.66 -2.39 -0.02 1.11 16 Total: -1.00 -73.33 413.23 0.45 -72.88 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -1.52 Total: 22.94 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.46 Total: 7.92 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -5.42 Total: -112.44 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.10 Total: -37.95 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.33 0.45 -72.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479747919.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.006 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds