Wall clock time and date at job start Sat Apr 11 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48504 * 109.47272 * 239.99945 * 3 2 1 5 5 H 1.48501 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47231 * 120.00268 * 3 2 1 7 7 C 1.38817 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99994 * 197.02072 * 7 2 1 9 9 N 1.36936 * 119.99719 * 17.02686 * 7 2 1 10 10 C 1.47080 * 120.88241 * 206.63835 * 9 7 2 11 11 C 1.53239 * 108.52105 * 231.20488 * 10 9 7 12 12 N 1.46901 * 109.33843 * 306.16934 * 11 10 9 13 13 C 1.46906 * 110.99991 * 187.25661 * 12 11 10 14 14 C 1.52996 * 109.47212 * 169.99648 * 13 12 11 15 15 C 1.52996 * 109.46917 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46872 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99782 * 180.27703 * 16 15 14 18 18 O 1.21278 * 119.99866 * 359.72155 * 17 16 15 19 19 C 1.50699 * 119.99785 * 179.72019 * 17 16 15 20 20 C 1.52995 * 109.46970 * 180.02562 * 19 17 16 21 21 H 1.09000 * 109.52224 * 305.00173 * 20 19 17 22 22 C 1.53181 * 109.52221 * 184.87679 * 20 19 17 23 23 C 1.53186 * 109.03211 * 183.17687 * 22 20 19 24 24 C 1.53091 * 109.21569 * 56.88557 * 23 22 20 25 25 O 1.42908 * 109.41464 * 302.42697 * 24 23 22 26 26 C 1.42898 * 114.09893 * 61.15528 * 25 24 23 27 27 C 1.46900 * 111.27424 * 63.10377 * 12 11 10 28 28 C 1.47084 * 120.88352 * 26.65428 * 9 7 2 29 29 H 0.97001 * 120.00133 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.62558 * 111.49032 * 10 9 7 31 31 H 1.08995 * 109.78679 * 351.00984 * 10 9 7 32 32 H 1.08994 * 109.49166 * 186.20834 * 11 10 9 33 33 H 1.09001 * 109.51515 * 66.14134 * 11 10 9 34 34 H 1.08999 * 109.46814 * 49.99523 * 13 12 11 35 35 H 1.08998 * 109.46619 * 289.99780 * 13 12 11 36 36 H 1.09005 * 109.46947 * 59.99605 * 14 13 12 37 37 H 1.09001 * 109.47100 * 300.00312 * 14 13 12 38 38 H 1.09000 * 109.47102 * 60.00502 * 15 14 13 39 39 H 1.08996 * 109.47419 * 299.99890 * 15 14 13 40 40 H 0.96998 * 120.00037 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47059 * 299.99990 * 19 17 16 42 42 H 1.09001 * 109.46866 * 59.99832 * 19 17 16 43 43 H 1.08997 * 109.54302 * 302.98006 * 22 20 19 44 44 H 1.08996 * 109.54420 * 63.24718 * 22 20 19 45 45 H 1.09005 * 109.46972 * 296.97952 * 23 22 20 46 46 H 1.09002 * 109.57908 * 176.85235 * 23 22 20 47 47 H 1.08996 * 109.48560 * 182.44406 * 24 23 22 48 48 H 1.08995 * 109.49252 * 62.41218 * 24 23 22 49 49 H 1.09004 * 109.48132 * 178.86099 * 26 25 24 50 50 H 1.08998 * 109.49222 * 58.83380 * 26 25 24 51 51 H 1.09001 * 109.48578 * 56.85347 * 27 12 11 52 52 H 1.08996 * 109.49433 * 176.93392 * 27 12 11 53 53 H 1.08995 * 109.62947 * 248.50891 * 28 9 7 54 54 H 1.09003 * 109.62457 * 8.89636 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3462 10 6 1.8302 -3.6608 0.1692 11 6 2.0035 -4.6201 -1.0131 12 7 0.7570 -4.6658 -1.7892 13 6 0.8222 -5.7011 -2.8294 14 6 -0.5645 -5.8910 -3.4475 15 6 -0.4964 -6.9688 -4.5312 16 7 -1.8241 -7.1502 -5.1234 17 6 -2.0070 -8.0587 -6.1022 18 8 -1.0714 -8.7223 -6.4960 19 6 -3.3740 -8.2498 -6.7070 20 6 -3.3073 -9.3319 -7.7865 21 1 -2.5418 -9.0708 -8.5172 22 6 -4.6659 -9.4421 -8.4854 23 6 -4.6105 -10.5812 -9.5081 24 6 -4.2146 -11.8779 -8.7971 25 8 -2.9569 -11.6963 -8.1434 26 6 -2.9617 -10.6769 -7.1420 27 6 0.4431 -3.3539 -2.3710 28 6 0.2060 -2.3428 -1.2443 29 1 -0.4850 0.8400 0.0004 30 1 1.0903 -4.0626 0.8615 31 1 2.7833 -3.5374 0.6833 32 1 2.2369 -5.6176 -0.6409 33 1 2.8159 -4.2701 -1.6500 34 1 1.1545 -6.6402 -2.3870 35 1 1.5260 -5.3948 -3.6032 36 1 -0.8968 -4.9518 -3.8898 37 1 -1.2684 -6.1972 -2.6736 38 1 -0.1640 -7.9080 -4.0892 39 1 0.2073 -6.6621 -5.3050 40 1 -2.5724 -6.6197 -4.8082 41 1 -4.0755 -8.5545 -5.9304 42 1 -3.7088 -7.3125 -7.1516 43 1 -5.4396 -9.6533 -7.7473 44 1 -4.8914 -8.5048 -8.9940 45 1 -3.8720 -10.3459 -10.2745 46 1 -5.5896 -10.7042 -9.9713 47 1 -4.1316 -12.6824 -9.5278 48 1 -4.9743 -12.1344 -8.0588 49 1 -1.9761 -10.6162 -6.6803 50 1 -3.7049 -10.9173 -6.3818 51 1 1.2772 -3.0212 -2.9888 52 1 -0.4549 -3.4332 -2.9836 53 1 -0.6900 -2.6179 -0.6880 54 1 0.0841 -1.3443 -1.6642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479922374.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:16 Heat of formation + Delta-G solvation = -93.867394 kcal Electronic energy + Delta-G solvation = -29341.012860 eV Core-core repulsion = 25311.698867 eV Total energy + Delta-G solvation = -4029.313992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.16692 -39.95678 -39.67472 -37.07320 -35.83356 -35.34682 -33.67381 -32.99863 -31.96336 -31.63268 -29.11322 -28.03721 -25.95241 -25.85113 -24.52526 -24.15106 -23.35315 -22.20850 -21.24948 -20.88976 -20.79237 -18.73601 -17.93169 -17.36971 -17.35173 -17.02230 -16.77656 -16.68191 -16.12160 -16.04457 -15.67309 -15.37616 -15.31960 -15.21588 -15.16384 -15.06364 -14.69212 -14.46456 -13.79027 -13.58179 -13.51769 -13.36832 -13.30044 -12.93761 -12.87059 -12.62679 -12.59865 -12.52264 -12.32797 -12.11224 -12.08493 -11.95105 -11.92386 -11.77573 -11.74984 -11.49125 -11.32300 -11.22686 -10.72982 -10.57891 -10.37345 -10.06140 -9.26649 -8.67685 -7.87983 -5.32256 1.46553 1.48498 1.55564 1.66609 2.19782 2.50639 2.98785 3.02650 3.27355 3.67641 3.69092 3.79749 3.84580 3.95831 4.02443 4.04758 4.10642 4.17929 4.28366 4.34433 4.37169 4.41383 4.48431 4.57384 4.61818 4.63313 4.65374 4.67608 4.70141 4.72939 4.75878 4.81590 4.87276 4.90418 4.99071 5.03709 5.09871 5.12090 5.16270 5.21881 5.25579 5.29818 5.38364 5.42098 5.50123 5.60742 5.69484 6.18834 6.28667 6.30690 6.37685 6.59010 7.13586 7.29351 7.84286 8.38244 9.18668 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.001528 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.589839 B =18315.793808 C =18917.277251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.059 3.941 14 C -0.114 4.114 15 C 0.128 3.872 16 N -0.721 5.721 17 C 0.504 3.496 18 O -0.583 6.583 19 C -0.128 4.128 20 C -0.104 4.104 21 H 0.060 0.940 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.049 3.951 25 O -0.412 6.412 26 C 0.061 3.939 27 C 0.050 3.950 28 C 0.184 3.816 29 H 0.251 0.749 30 H 0.017 0.983 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.416 0.584 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.013 0.987 52 H 0.087 0.913 53 H 0.000 1.000 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 -20.660 -16.793 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.398 4.398 8 H 0.083 0.917 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.075 4.075 12 N -0.265 5.265 13 C -0.069 4.069 14 C -0.152 4.152 15 C 0.004 3.996 16 N -0.373 5.373 17 C 0.292 3.708 18 O -0.463 6.463 19 C -0.167 4.167 20 C -0.123 4.123 21 H 0.078 0.922 22 C -0.152 4.152 23 C -0.193 4.193 24 C -0.028 4.028 25 O -0.331 6.331 26 C -0.016 4.016 27 C -0.079 4.079 28 C 0.058 3.942 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.032 0.968 52 H 0.105 0.895 53 H 0.018 0.982 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.027 -21.210 -16.759 29.587 hybrid contribution 0.779 1.762 -0.074 1.928 sum -11.248 -19.448 -16.833 28.073 Atomic orbital electron populations 1.70171 1.06565 1.25954 1.55305 1.25767 0.96092 1.01380 1.01230 0.85340 0.77584 0.79239 0.78257 1.20611 1.21798 1.20135 1.19501 0.92897 0.86121 1.41258 0.91672 1.44398 1.34425 1.02108 1.52998 1.21128 0.97446 0.85586 0.94098 1.22463 0.89619 0.99959 0.95451 1.61906 1.34238 1.05478 1.24859 1.22028 0.96693 0.95421 0.92788 1.21637 0.97675 0.98457 0.97411 1.21136 0.84621 0.98732 0.95138 1.45998 1.12361 1.40663 1.38270 1.21342 0.91887 0.78593 0.78984 1.90691 1.45249 1.47769 1.62631 1.21731 0.93246 1.02008 0.99749 1.21484 0.98801 0.94679 0.97385 0.92176 1.21671 0.95448 0.99586 0.98501 1.22185 1.03003 0.95400 0.98680 1.22811 0.85418 0.98015 0.96522 1.87936 1.34328 1.56672 1.54167 1.22806 1.02450 0.86606 0.89689 1.22622 0.99455 0.89318 0.96515 1.20643 0.87832 0.96413 0.89280 0.94002 0.96471 0.92300 0.88721 0.96119 0.89566 0.95380 0.91122 0.89899 0.91893 0.92787 0.74686 0.86012 0.85962 0.89996 0.89941 0.92276 0.88711 0.88337 0.92080 0.89944 0.92322 0.96840 0.89455 0.98153 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.15 21.65 0.24 -54.95 16 2 C -0.05 -2.76 4.93 84.86 0.42 -2.34 16 3 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.27 -14.94 9.63 84.03 0.81 -14.13 16 8 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 9 N -0.62 -31.55 3.04 -698.13 -2.12 -33.67 16 10 C 0.14 6.04 6.69 86.35 0.58 6.62 16 11 C 0.05 1.84 5.62 86.38 0.49 2.33 16 12 N -0.54 -17.62 4.63 -895.25 -4.14 -21.76 16 13 C 0.06 1.43 4.96 86.30 0.43 1.86 16 14 C -0.11 -2.20 5.26 30.59 0.16 -2.04 16 15 C 0.13 2.38 5.67 86.38 0.49 2.87 16 16 N -0.72 -10.86 5.56 -463.06 -2.57 -13.43 16 17 C 0.50 9.09 7.56 87.66 0.66 9.76 16 18 O -0.58 -15.98 13.98 -3.02 -0.04 -16.02 16 19 C -0.13 -1.28 5.18 29.85 0.15 -1.13 16 20 C -0.10 -1.48 2.03 -10.70 -0.02 -1.50 16 21 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16 22 C -0.11 -1.00 5.32 30.72 0.16 -0.84 16 23 C -0.16 -1.54 6.13 30.69 0.19 -1.35 16 24 C 0.05 0.62 6.84 72.01 0.49 1.11 16 25 O -0.41 -8.67 10.77 -148.98 -1.60 -10.28 16 26 C 0.06 1.12 5.84 72.01 0.42 1.54 16 27 C 0.05 1.87 5.46 86.38 0.47 2.34 16 28 C 0.18 8.97 5.43 86.35 0.47 9.43 16 29 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 32 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.85 7.97 -2.39 -0.02 1.83 16 35 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.07 1.41 6.40 -2.38 -0.02 1.39 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 3.90 8.47 -92.71 -0.79 3.11 16 41 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 1.99 6.02 -2.39 -0.01 1.97 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 51 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.09 2.79 6.16 -2.39 -0.01 2.77 16 53 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 54 H 0.06 3.06 6.11 -2.39 -0.01 3.05 16 Total: -1.00 -73.49 412.23 -1.77 -75.26 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.08 Total: 13.42 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.37 Total: 14.52 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -8.60 Total: -123.81 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.65 Total: -26.30 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.49 -1.77 -75.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479922374.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.608 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds