Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48497 * 109.46972 * 269.99967 * 3 2 1 5 5 H 1.48501 * 109.47111 * 30.00039 * 3 2 1 6 6 H 1.48505 * 109.46996 * 150.00136 * 3 2 1 7 7 C 1.38817 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99994 * 197.02072 * 7 2 1 9 9 N 1.36936 * 119.99719 * 17.02686 * 7 2 1 10 10 C 1.47080 * 120.88241 * 206.63835 * 9 7 2 11 11 C 1.53239 * 108.52105 * 231.20488 * 10 9 7 12 12 N 1.46901 * 109.33843 * 306.16934 * 11 10 9 13 13 C 1.46906 * 110.99991 * 187.25661 * 12 11 10 14 14 C 1.52998 * 109.47232 * 170.00038 * 13 12 11 15 15 C 1.52996 * 109.46937 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46872 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99782 * 180.27703 * 16 15 14 18 18 O 1.21278 * 119.99866 * 359.72155 * 17 16 15 19 19 C 1.50699 * 119.99785 * 179.72019 * 17 16 15 20 20 C 1.53002 * 109.46714 * 180.02562 * 19 17 16 21 21 H 1.08991 * 109.52498 * 54.88024 * 20 19 17 22 22 C 1.53182 * 109.51973 * 175.00332 * 20 19 17 23 23 C 1.53175 * 109.03645 * 176.88462 * 22 20 19 24 24 C 1.53091 * 109.16470 * 303.01728 * 23 22 20 25 25 O 1.42914 * 109.41249 * 57.60950 * 24 23 22 26 26 C 1.42898 * 114.09632 * 298.84128 * 25 24 23 27 27 C 1.46897 * 111.26967 * 63.10669 * 12 11 10 28 28 C 1.47089 * 120.88087 * 26.65693 * 9 7 2 29 29 H 0.97001 * 120.00133 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.62957 * 111.49693 * 10 9 7 31 31 H 1.08995 * 109.78679 * 351.00984 * 10 9 7 32 32 H 1.08996 * 109.49476 * 186.21274 * 11 10 9 33 33 H 1.09000 * 109.49395 * 66.12584 * 11 10 9 34 34 H 1.08991 * 109.47032 * 49.99328 * 13 12 11 35 35 H 1.08998 * 109.46619 * 289.99780 * 13 12 11 36 36 H 1.09000 * 109.47133 * 59.99854 * 14 13 12 37 37 H 1.08998 * 109.47108 * 299.99442 * 14 13 12 38 38 H 1.09000 * 109.47102 * 60.00113 * 15 14 13 39 39 H 1.08996 * 109.47419 * 299.99501 * 15 14 13 40 40 H 0.96998 * 120.00037 * 359.97438 * 16 15 14 41 41 H 1.08999 * 109.47059 * 299.99990 * 19 17 16 42 42 H 1.08995 * 109.46743 * 60.00282 * 19 17 16 43 43 H 1.09002 * 109.54057 * 296.75393 * 22 20 19 44 44 H 1.09000 * 109.54540 * 57.01820 * 22 20 19 45 45 H 1.09006 * 109.52173 * 62.92316 * 23 22 20 46 46 H 1.09002 * 109.52359 * 183.04576 * 23 22 20 47 47 H 1.08998 * 109.48115 * 177.58878 * 24 23 22 48 48 H 1.08993 * 109.48302 * 297.61563 * 24 23 22 49 49 H 1.09002 * 109.48522 * 301.17822 * 26 25 24 50 50 H 1.08999 * 109.47918 * 181.14514 * 26 25 24 51 51 H 1.08991 * 109.49453 * 56.85659 * 27 12 11 52 52 H 1.09008 * 109.48972 * 176.93814 * 27 12 11 53 53 H 1.08995 * 109.62638 * 248.50697 * 28 9 7 54 54 H 1.08994 * 109.62669 * 8.89172 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3462 10 6 1.8302 -3.6608 0.1692 11 6 2.0035 -4.6201 -1.0131 12 7 0.7570 -4.6658 -1.7892 13 6 0.8222 -5.7011 -2.8294 14 6 -0.5645 -5.8909 -3.4475 15 6 -0.4964 -6.9687 -4.5313 16 7 -1.8241 -7.1501 -5.1236 17 6 -2.0070 -8.0585 -6.1023 18 8 -1.0714 -8.7222 -6.4961 19 6 -3.3739 -8.2495 -6.7072 20 6 -3.3072 -9.3318 -7.7867 21 1 -2.8869 -10.2437 -7.3628 22 6 -4.7167 -9.6152 -8.3151 23 6 -4.6284 -10.6424 -9.4480 24 6 -3.6956 -10.1090 -10.5384 25 8 -2.4113 -9.8370 -9.9736 26 6 -2.4253 -8.8490 -8.9413 27 6 0.4433 -3.3539 -2.3710 28 6 0.2060 -2.3427 -1.2444 29 1 -0.4850 0.8400 0.0004 30 1 1.0903 -4.0627 0.8614 31 1 2.7833 -3.5374 0.6833 32 1 2.2369 -5.6177 -0.6410 33 1 2.8157 -4.2697 -1.6499 34 1 1.1545 -6.6401 -2.3871 35 1 1.5260 -5.3948 -3.6032 36 1 -0.8968 -4.9518 -3.8899 37 1 -1.2684 -6.1973 -2.6737 38 1 -0.1640 -7.9080 -4.0893 39 1 0.2073 -6.6621 -5.3051 40 1 -2.5724 -6.6195 -4.8083 41 1 -4.0755 -8.5542 -5.9307 42 1 -3.7086 -7.3124 -7.1519 43 1 -5.3349 -10.0125 -7.5100 44 1 -5.1569 -8.6925 -8.6931 45 1 -4.2343 -11.5812 -9.0586 46 1 -5.6210 -10.8097 -9.8663 47 1 -3.5952 -10.8543 -11.3274 48 1 -4.1110 -9.1917 -10.9555 49 1 -2.8242 -7.9150 -9.3373 50 1 -1.4099 -8.6865 -8.5799 51 1 1.2772 -3.0212 -2.9888 52 1 -0.4549 -3.4332 -2.9836 53 1 -0.6900 -2.6178 -0.6880 54 1 0.0841 -1.3443 -1.6642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479922375.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -94.038717 kcal Electronic energy + Delta-G solvation = -29356.914237 eV Core-core repulsion = 25327.592816 eV Total energy + Delta-G solvation = -4029.321421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.16718 -39.95976 -39.67687 -37.07429 -35.83476 -35.34834 -33.67461 -33.00068 -31.96412 -31.63302 -29.11536 -28.03983 -25.95412 -25.85387 -24.52644 -24.15215 -23.35438 -22.20881 -21.25068 -20.89069 -20.79421 -18.73761 -17.93132 -17.40011 -17.33500 -16.98640 -16.83459 -16.65966 -16.11291 -16.05648 -15.67409 -15.39270 -15.32515 -15.21560 -15.13954 -15.05392 -14.69874 -14.48027 -13.78950 -13.56762 -13.51785 -13.39145 -13.29558 -12.96878 -12.81541 -12.66404 -12.63430 -12.52753 -12.28807 -12.11392 -12.06808 -11.95122 -11.92366 -11.78112 -11.74182 -11.49090 -11.31364 -11.24415 -10.73039 -10.58887 -10.37673 -10.06136 -9.26644 -8.68075 -7.88170 -5.32585 1.46314 1.47432 1.56445 1.66651 2.19802 2.50296 2.98327 3.02517 3.27057 3.67505 3.68986 3.79908 3.84264 3.95782 4.02426 4.04959 4.09913 4.18014 4.28131 4.34452 4.37170 4.41120 4.48348 4.57205 4.61913 4.63153 4.64697 4.68302 4.70614 4.72457 4.75698 4.81581 4.87040 4.90246 4.98936 5.03685 5.09726 5.12120 5.16446 5.21730 5.25304 5.29702 5.38360 5.42151 5.50062 5.60882 5.69490 6.18857 6.28658 6.30054 6.37585 6.59010 7.13400 7.29356 7.84014 8.37935 9.18554 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.001547 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.740449 B =18094.455831 C =18529.471261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.059 3.941 14 C -0.114 4.114 15 C 0.128 3.872 16 N -0.721 5.721 17 C 0.504 3.496 18 O -0.583 6.583 19 C -0.128 4.128 20 C -0.104 4.104 21 H 0.061 0.939 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.412 6.412 26 C 0.060 3.940 27 C 0.050 3.950 28 C 0.184 3.816 29 H 0.251 0.749 30 H 0.017 0.983 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.416 0.584 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.014 0.986 52 H 0.087 0.913 53 H 0.000 1.000 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -19.875 -17.626 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.075 4.075 12 N -0.265 5.265 13 C -0.069 4.069 14 C -0.152 4.152 15 C 0.004 3.996 16 N -0.373 5.373 17 C 0.292 3.708 18 O -0.463 6.463 19 C -0.167 4.167 20 C -0.123 4.123 21 H 0.080 0.920 22 C -0.152 4.152 23 C -0.192 4.192 24 C -0.028 4.028 25 O -0.331 6.331 26 C -0.016 4.016 27 C -0.079 4.079 28 C 0.058 3.942 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.100 0.900 51 H 0.032 0.968 52 H 0.105 0.895 53 H 0.018 0.982 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.730 -20.413 -17.603 29.396 hybrid contribution 0.732 1.669 0.019 1.822 sum -10.998 -18.744 -17.584 27.955 Atomic orbital electron populations 1.70178 1.06564 1.25868 1.55415 1.25768 0.96100 1.01378 1.01271 0.85262 0.78083 0.79537 0.77527 1.21246 1.21988 1.19452 1.19542 0.92890 0.86093 1.41073 0.91646 1.44408 1.34414 1.02119 1.52992 1.21129 0.97449 0.85579 0.94106 1.22464 0.89625 0.99952 0.95452 1.61906 1.34245 1.05479 1.24862 1.22026 0.96694 0.95411 0.92795 1.21636 0.97673 0.98466 0.97406 1.21136 0.84633 0.98694 0.95166 1.45998 1.12364 1.40634 1.38299 1.21343 0.91887 0.78570 0.79009 1.90692 1.45278 1.47926 1.62446 1.21734 0.93319 1.02020 0.99668 1.21483 0.97115 0.98545 0.95150 0.91997 1.21675 0.94785 1.00087 0.98671 1.22182 1.00998 0.99175 0.96875 1.22815 0.83384 1.00821 0.95792 1.87937 1.30956 1.60691 1.53515 1.22804 1.01297 0.90308 0.87185 1.22620 0.99468 0.89309 0.96510 1.20645 0.87835 0.96419 0.89287 0.94016 0.96469 0.92293 0.88727 0.96094 0.89592 0.95347 0.91086 0.89941 0.91980 0.92701 0.74687 0.85768 0.86200 0.89803 0.90104 0.92160 0.88701 0.88322 0.92182 0.92476 0.90025 0.96814 0.89454 0.98152 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 11.15 21.65 0.24 -54.98 16 2 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 3 Si 0.97 44.92 29.59 68.60 2.03 46.95 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.27 -14.83 9.63 84.03 0.81 -14.02 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.62 -31.52 3.04 -698.13 -2.12 -33.64 16 10 C 0.14 6.03 6.69 86.35 0.58 6.61 16 11 C 0.05 1.84 5.62 86.38 0.49 2.32 16 12 N -0.54 -17.60 4.63 -895.27 -4.14 -21.75 16 13 C 0.06 1.43 4.96 86.30 0.43 1.85 16 14 C -0.11 -2.20 5.26 30.59 0.16 -2.04 16 15 C 0.13 2.38 5.67 86.38 0.49 2.87 16 16 N -0.72 -10.86 5.56 -463.06 -2.57 -13.43 16 17 C 0.50 9.09 7.56 87.66 0.66 9.75 16 18 O -0.58 -15.98 13.99 -3.02 -0.04 -16.02 16 19 C -0.13 -1.28 5.18 29.85 0.15 -1.13 16 20 C -0.10 -1.46 2.03 -10.70 -0.02 -1.49 16 21 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 22 C -0.11 -1.00 5.31 30.71 0.16 -0.83 16 23 C -0.15 -1.53 6.14 30.68 0.19 -1.34 16 24 C 0.05 0.63 6.84 72.01 0.49 1.12 16 25 O -0.41 -8.79 10.77 -148.98 -1.60 -10.40 16 26 C 0.06 1.13 5.84 72.01 0.42 1.55 16 27 C 0.05 1.87 5.46 86.38 0.47 2.34 16 28 C 0.18 8.95 5.43 86.35 0.47 9.42 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 32 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.85 7.97 -2.39 -0.02 1.83 16 35 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 36 H 0.07 1.41 6.40 -2.39 -0.02 1.39 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 3.90 8.47 -92.71 -0.79 3.11 16 41 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.08 2.01 6.04 -2.39 -0.01 1.99 16 51 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.09 2.78 6.16 -2.38 -0.01 2.77 16 53 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 54 H 0.06 3.06 6.11 -2.39 -0.01 3.04 16 Total: -1.00 -73.51 412.24 -1.77 -75.28 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.08 Total: 13.35 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.37 Total: 14.63 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -8.60 Total: -123.80 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -1.65 Total: -26.42 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.51 -1.77 -75.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479922375.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds