Wall clock time and date at job start Sat Apr 11 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99624 * 2 1 4 4 H 1.48496 * 109.47037 * 269.99833 * 3 2 1 5 5 H 1.48495 * 109.47526 * 30.00417 * 3 2 1 6 6 H 1.48502 * 109.46782 * 150.00248 * 3 2 1 7 7 C 1.38806 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99804 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65052 * 345.72697 * 9 7 2 11 11 C 1.54905 * 104.83456 * 204.16355 * 10 9 7 12 12 C 1.55405 * 101.66471 * 323.07007 * 11 10 9 13 13 C 1.47029 * 125.64865 * 165.76092 * 9 7 2 14 14 H 1.09001 * 109.87891 * 59.34219 * 13 9 7 15 15 C 1.52991 * 109.88412 * 298.32793 * 13 9 7 16 16 N 1.46505 * 109.47323 * 174.60081 * 15 13 9 17 17 C 1.34773 * 120.00013 * 174.72040 * 16 15 13 18 18 O 1.21278 * 120.00205 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99696 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47087 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47366 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47366 * 179.97438 * 21 20 19 23 23 N 1.46902 * 109.47148 * 180.02562 * 22 21 20 24 24 C 1.47012 * 111.00104 * 293.63552 * 23 22 21 25 25 C 1.53094 * 109.26076 * 177.60475 * 24 23 22 26 26 O 1.43020 * 109.25341 * 56.84965 * 25 24 23 27 27 C 1.43016 * 113.73917 * 301.32915 * 26 25 24 28 28 C 1.47015 * 111.00099 * 169.99859 * 23 22 21 29 29 H 0.97004 * 120.00362 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36275 * 322.99695 * 10 9 7 31 31 H 1.08994 * 110.36830 * 85.20955 * 10 9 7 32 32 H 1.08999 * 111.00766 * 81.05970 * 11 10 9 33 33 H 1.09003 * 111.00537 * 204.88151 * 11 10 9 34 34 H 1.09001 * 110.70009 * 277.04931 * 12 11 10 35 35 H 1.09000 * 110.85543 * 153.70049 * 12 11 10 36 36 H 1.08999 * 109.47304 * 54.59901 * 15 13 9 37 37 H 1.09000 * 109.47344 * 294.59885 * 15 13 9 38 38 H 0.96997 * 119.99343 * 354.71174 * 16 15 13 39 39 H 1.09003 * 109.47026 * 59.99579 * 19 17 16 40 40 H 1.08996 * 109.47186 * 299.99785 * 19 17 16 41 41 H 1.09004 * 109.47192 * 299.99873 * 20 19 17 42 42 H 1.09003 * 109.47230 * 60.00072 * 20 19 17 43 43 H 1.08996 * 109.47215 * 300.00341 * 21 20 19 44 44 H 1.09003 * 109.46720 * 59.99964 * 21 20 19 45 45 H 1.09004 * 109.47192 * 300.00078 * 22 21 20 46 46 H 1.09000 * 109.46772 * 60.00091 * 22 21 20 47 47 H 1.08997 * 109.50836 * 297.54487 * 24 23 22 48 48 H 1.09007 * 109.50372 * 57.67028 * 24 23 22 49 49 H 1.08997 * 109.50688 * 296.91930 * 25 24 23 50 50 H 1.08995 * 109.50871 * 176.77869 * 25 24 23 51 51 H 1.08998 * 109.50650 * 298.73785 * 27 26 25 52 52 H 1.09002 * 109.53981 * 178.63245 * 27 26 25 53 53 H 1.08995 * 109.50371 * 302.33064 * 28 23 22 54 54 H 1.09007 * 109.50330 * 62.45819 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1093 -2.5518 0.2953 11 6 -0.2510 -4.0187 0.7722 12 6 0.7683 -4.7478 -0.1468 13 6 1.9000 -3.7090 -0.2949 14 1 2.7010 -3.9305 0.4104 15 6 2.4444 -3.7329 -1.7245 16 7 3.1281 -5.0060 -1.9656 17 6 3.5972 -5.2967 -3.1952 18 8 3.4529 -4.5047 -4.1022 19 6 4.3009 -6.6061 -3.4429 20 6 4.7294 -6.6852 -4.9096 21 6 5.4445 -8.0143 -5.1610 22 6 5.8724 -8.0937 -6.6278 23 7 6.5584 -9.3701 -6.8693 24 6 7.8315 -9.4308 -6.1367 25 6 8.4827 -10.7969 -6.3682 26 8 8.6557 -11.0050 -7.7725 27 6 7.4356 -10.9530 -8.5169 28 6 6.7738 -9.5886 -8.3071 29 1 -0.4851 0.8401 0.0004 30 1 -0.4146 -1.8651 1.0849 31 1 -0.7034 -2.3840 -0.6029 32 1 0.0307 -4.1178 1.8205 33 1 -1.2630 -4.3879 0.6051 34 1 0.3218 -4.9724 -1.1154 35 1 1.1385 -5.6562 0.3283 36 1 3.1480 -2.9114 -1.8592 37 1 1.6199 -3.6242 -2.4292 38 1 3.2431 -5.6396 -1.2402 39 1 3.6245 -7.4305 -3.2173 40 1 5.1807 -6.6725 -2.8030 41 1 3.8493 -6.6190 -5.5493 42 1 5.4057 -5.8608 -5.1355 43 1 6.3245 -8.0801 -4.5213 44 1 4.7685 -8.8390 -4.9349 45 1 4.9920 -8.0281 -7.2672 46 1 6.5481 -7.2690 -6.8542 47 1 8.4961 -8.6452 -6.4961 48 1 7.6455 -9.2920 -5.0716 49 1 7.8423 -11.5791 -5.9605 50 1 9.4536 -10.8258 -5.8737 51 1 6.7648 -11.7398 -8.1716 52 1 7.6485 -11.0953 -9.5764 53 1 5.8158 -9.5650 -8.8263 54 1 7.4215 -8.8054 -8.7012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481066365.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:29 Heat of formation + Delta-G solvation = -93.324980 kcal Electronic energy + Delta-G solvation = -29141.815708 eV Core-core repulsion = 25112.525237 eV Total energy + Delta-G solvation = -4029.290471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.83814 -40.50937 -39.27851 -37.48078 -35.74296 -35.09400 -34.40339 -32.17314 -31.59292 -31.11507 -30.03933 -27.75984 -26.68534 -25.61828 -25.01681 -23.90751 -22.07878 -21.89621 -21.39499 -21.31358 -20.92998 -18.83726 -17.79936 -17.55929 -17.28951 -17.20253 -16.93072 -16.61831 -16.28514 -16.00749 -15.94314 -15.72163 -15.61211 -15.33869 -15.00366 -14.68110 -14.53900 -13.99960 -13.72705 -13.66642 -13.48382 -13.39601 -13.13542 -12.98527 -12.86340 -12.70886 -12.63979 -12.45275 -12.28760 -12.22050 -12.02421 -11.88009 -11.85093 -11.71756 -11.57654 -11.49454 -11.40235 -11.30805 -10.86072 -10.70296 -10.63869 -10.02422 -9.43145 -8.87168 -7.90123 -5.27517 1.42109 1.44848 1.52334 1.73069 2.24127 2.49036 2.73801 2.97386 3.29565 3.68875 3.80940 3.87186 3.94059 3.96392 3.99702 4.01825 4.03985 4.19283 4.22032 4.26672 4.31142 4.41625 4.46120 4.47050 4.54156 4.57354 4.62162 4.70605 4.72837 4.76867 4.81175 4.84230 4.89413 4.95049 4.97995 5.00941 5.04067 5.08039 5.15068 5.23077 5.34505 5.39437 5.45751 5.46912 5.60377 5.65947 5.77244 5.94897 5.95693 6.18316 6.21872 6.67723 7.07558 7.38014 7.75120 8.40808 9.20749 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.001587 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.085227 B =17638.241411 C =18363.668637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.128 3.872 16 N -0.710 5.710 17 C 0.498 3.502 18 O -0.601 6.601 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.101 4.101 22 C 0.054 3.946 23 N -0.541 5.541 24 C 0.013 3.987 25 C 0.061 3.939 26 O -0.410 6.410 27 C 0.063 3.937 28 C 0.015 3.985 29 H 0.247 0.753 30 H 0.036 0.964 31 H -0.011 1.011 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.417 0.583 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.031 0.969 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.111 0.889 51 H 0.064 0.936 52 H 0.111 0.889 53 H 0.096 0.904 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.336 -27.080 -9.229 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.363 5.363 17 C 0.287 3.713 18 O -0.482 6.482 19 C -0.164 4.164 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.073 4.073 23 N -0.266 5.266 24 C -0.115 4.115 25 C -0.016 4.016 26 O -0.329 6.329 27 C -0.014 4.014 28 C -0.114 4.114 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.007 0.993 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.129 0.871 51 H 0.082 0.918 52 H 0.129 0.871 53 H 0.114 0.886 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 13.063 -26.705 -9.739 31.284 hybrid contribution 0.317 2.435 -0.268 2.470 sum 13.380 -24.270 -10.007 29.465 Atomic orbital electron populations 1.70142 1.06281 1.25374 1.57594 1.25693 0.96545 1.01043 1.02255 0.85182 0.78006 0.79557 0.77249 1.21917 1.21728 1.19118 1.19297 0.90737 0.83654 1.43137 0.90568 1.44764 1.06632 1.02124 1.80137 1.21274 0.84088 0.93632 0.96255 1.22915 0.99644 0.95177 0.99469 1.22636 0.95031 0.97365 0.99828 1.21351 0.96090 0.86623 0.91875 0.92919 1.21625 0.94778 0.85004 0.98484 1.45920 1.58131 1.20216 1.11991 1.21715 0.78154 0.89806 0.81659 1.90694 1.59694 1.52812 1.45002 1.21690 1.02379 0.93196 0.99158 1.21220 1.00175 0.97560 0.94888 1.21477 1.00877 0.96585 0.94952 1.22145 0.98085 0.88795 0.98323 1.62278 1.21760 1.33875 1.08735 1.22905 0.89879 0.97911 1.00793 1.22809 1.01924 0.95374 0.81457 1.87959 1.31931 1.92864 1.20106 1.22774 0.85732 0.95538 0.97352 1.22840 1.01543 0.98005 0.88971 0.94323 0.94541 0.99260 0.91013 0.89964 0.91865 0.87400 0.95374 0.94994 0.74559 0.85805 0.86210 0.92821 0.93395 0.90676 0.89956 0.90649 0.95621 0.95093 0.87866 0.91706 0.87078 0.91788 0.87094 0.88579 0.94958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 10.56 21.65 0.23 -57.34 16 2 C -0.06 -3.56 5.47 84.86 0.46 -3.10 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.24 -13.41 9.71 84.03 0.82 -12.59 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -30.78 3.13 -668.27 -2.09 -32.87 16 10 C 0.17 8.41 5.42 86.85 0.47 8.88 16 11 C -0.13 -4.55 7.09 32.07 0.23 -4.32 16 12 C -0.11 -3.26 6.26 31.87 0.20 -3.07 16 13 C 0.15 5.57 3.18 45.34 0.14 5.72 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 15 C 0.13 4.95 5.11 86.38 0.44 5.39 16 16 N -0.71 -19.17 5.37 -463.07 -2.49 -21.66 16 17 C 0.50 14.09 7.83 87.66 0.69 14.78 16 18 O -0.60 -24.06 15.98 -3.02 -0.05 -24.11 16 19 C -0.12 -1.97 5.70 29.85 0.17 -1.80 16 20 C -0.10 -1.78 4.50 30.59 0.14 -1.64 16 21 C -0.10 -1.25 5.15 30.59 0.16 -1.09 16 22 C 0.05 0.78 4.96 86.30 0.43 1.21 16 23 N -0.54 -7.49 4.73 -895.22 -4.23 -11.72 16 24 C 0.01 0.16 5.44 86.31 0.47 0.63 16 25 C 0.06 0.71 7.01 72.01 0.50 1.21 16 26 O -0.41 -6.57 10.83 -148.98 -1.61 -8.18 16 27 C 0.06 0.74 7.01 72.01 0.50 1.25 16 28 C 0.01 0.19 5.64 86.31 0.49 0.67 16 29 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 30 H 0.04 2.01 6.90 -2.39 -0.02 1.99 16 31 H -0.01 -0.58 8.06 -2.39 -0.02 -0.60 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.89 7.76 -2.39 -0.02 1.87 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.03 1.28 7.84 -2.39 -0.02 1.27 16 37 H 0.03 1.43 8.01 -2.39 -0.02 1.41 16 38 H 0.42 7.58 8.42 -92.71 -0.78 6.80 16 39 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 42 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 43 H 0.07 0.77 6.52 -2.39 -0.02 0.75 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 1.11 8.04 -2.38 -0.02 1.09 16 46 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 47 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.10 0.97 6.38 -2.38 -0.02 0.96 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 54 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -77.86 419.26 -1.83 -79.69 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.07 Total: 15.28 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.31 Total: 12.13 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -8.58 Total: -123.59 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.66 Total: -32.29 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -77.86 -1.83 -79.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481066365.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.636 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds