Wall clock time and date at job start Sat Apr 11 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00234 * 2 1 4 4 H 1.48501 * 109.46669 * 269.99799 * 3 2 1 5 5 H 1.48502 * 109.47015 * 29.99575 * 3 2 1 6 6 H 1.48500 * 109.47245 * 149.99712 * 3 2 1 7 7 C 1.38819 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99606 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00113 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00079 * 174.60653 * 9 7 2 11 11 C 1.53003 * 109.54312 * 64.34057 * 10 9 7 12 12 N 1.46497 * 109.47009 * 54.44325 * 11 10 9 13 13 C 1.34773 * 120.00012 * 184.83217 * 12 11 10 14 14 O 1.21279 * 120.00068 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00014 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46925 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46845 * 179.97438 * 16 15 13 18 18 N 1.46899 * 109.47272 * 180.02562 * 17 16 15 19 19 C 1.48531 * 111.00162 * 52.60054 * 18 17 16 20 20 C 1.54938 * 103.22925 * 159.72347 * 19 18 17 21 21 C 1.54600 * 102.91856 * 322.58927 * 20 19 18 22 22 C 1.47902 * 111.00499 * 170.00159 * 18 17 16 23 23 C 1.53168 * 109.54632 * 184.51824 * 10 9 7 24 24 C 1.53106 * 109.15926 * 63.06177 * 23 10 9 25 25 O 1.42908 * 109.48596 * 57.47725 * 24 23 10 26 26 C 1.42901 * 114.09480 * 298.89429 * 25 24 23 27 27 C 1.53092 * 109.41862 * 61.15349 * 26 25 24 28 28 H 0.97000 * 119.99851 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00163 * 354.61535 * 9 7 2 30 30 H 1.08997 * 109.47261 * 174.44627 * 11 10 9 31 31 H 1.09004 * 109.46837 * 294.44415 * 11 10 9 32 32 H 0.97006 * 120.00032 * 4.83623 * 12 11 10 33 33 H 1.08995 * 109.47268 * 299.99803 * 15 13 12 34 34 H 1.09000 * 109.46806 * 60.00374 * 15 13 12 35 35 H 1.08999 * 109.47554 * 299.99983 * 16 15 13 36 36 H 1.09000 * 109.46988 * 60.00590 * 16 15 13 37 37 H 1.09000 * 109.47822 * 300.00111 * 17 16 15 38 38 H 1.09005 * 109.47189 * 60.00376 * 17 16 15 39 39 H 1.08996 * 110.67323 * 278.16139 * 19 18 17 40 40 H 1.09000 * 110.66326 * 41.29176 * 19 18 17 41 41 H 1.08998 * 110.72229 * 204.23296 * 20 19 18 42 42 H 1.09000 * 110.72363 * 80.94554 * 20 19 18 43 43 H 1.08999 * 110.31283 * 263.03883 * 21 20 19 44 44 H 1.08998 * 110.30648 * 140.87441 * 21 20 19 45 45 H 1.08996 * 109.91470 * 333.51116 * 22 18 17 46 46 H 1.09004 * 109.91412 * 94.60196 * 22 18 17 47 47 H 1.08998 * 109.52909 * 182.88266 * 23 10 9 48 48 H 1.09002 * 109.52492 * 303.07559 * 23 10 9 49 49 H 1.08993 * 109.40938 * 297.49939 * 24 23 10 50 50 H 1.08999 * 109.49364 * 177.50666 * 24 23 10 51 51 H 1.09001 * 109.47871 * 301.16640 * 26 25 24 52 52 H 1.09002 * 109.48766 * 181.14810 * 26 25 24 53 53 H 1.09006 * 109.52056 * 182.48748 * 27 26 25 54 54 H 1.09000 * 109.57114 * 62.33454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4653 0.1209 11 6 3.8278 -3.3398 -1.1020 12 7 4.1353 -2.5887 -2.3216 13 6 3.8688 -3.1255 -3.5287 14 8 3.3741 -4.2301 -3.6054 15 6 4.1857 -2.3531 -4.7834 16 6 3.7891 -3.1822 -6.0065 17 6 4.1102 -2.3978 -7.2803 18 7 3.7289 -3.1935 -8.4547 19 6 2.3201 -3.6526 -8.3520 20 6 1.9462 -3.9806 -9.8194 21 6 2.6721 -2.8728 -10.6169 22 6 3.7999 -2.3831 -9.6899 23 6 5.6144 -2.1801 0.2087 24 6 5.8994 -1.3733 1.4783 25 8 5.4322 -2.0975 2.6183 26 6 4.0257 -2.3502 2.6126 27 6 3.6658 -3.1981 1.3898 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3659 -0.0778 30 1 4.4480 -4.2351 -1.0605 31 1 2.7761 -3.6263 -1.1071 32 1 4.5308 -1.7050 -2.2603 33 1 3.6293 -1.4159 -4.7833 34 1 5.2543 -2.1413 -4.8194 35 1 4.3459 -4.1193 -6.0064 36 1 2.7206 -3.3944 -5.9707 37 1 3.5532 -1.4609 -7.2803 38 1 5.1787 -2.1851 -7.3164 39 1 2.2503 -4.5441 -7.7288 40 1 1.6841 -2.8582 -7.9614 41 1 0.8679 -3.9179 -9.9660 42 1 2.3183 -4.9656 -10.1013 43 1 1.9856 -2.0565 -10.8413 44 1 3.0894 -3.2810 -11.5374 45 1 3.6537 -1.3296 -9.4517 46 1 4.7678 -2.5240 -10.1712 47 1 6.1624 -3.1216 0.2463 48 1 5.9286 -1.6094 -0.6652 49 1 5.3848 -0.4142 1.4211 50 1 6.9725 -1.2052 1.5693 51 1 3.4865 -1.4038 2.5703 52 1 3.7488 -2.8859 3.5207 53 1 2.5875 -3.3547 1.3598 54 1 4.1722 -4.1613 1.4515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484191721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:13 Heat of formation + Delta-G solvation = -99.323118 kcal Electronic energy + Delta-G solvation = -30762.282759 eV Core-core repulsion = 26732.732189 eV Total energy + Delta-G solvation = -4029.550570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.19238 -40.33577 -39.77177 -37.40827 -35.35964 -35.12809 -33.91572 -32.04188 -31.98399 -31.61050 -29.85201 -28.67388 -26.71941 -25.66515 -24.47879 -23.76282 -23.02985 -21.75334 -21.44275 -21.00545 -20.06908 -19.80538 -18.20002 -17.25441 -17.07667 -17.04316 -16.75685 -16.72843 -16.60843 -16.26242 -15.93983 -15.62738 -15.41058 -14.96873 -14.94147 -14.53475 -14.25362 -14.20451 -14.06615 -13.92289 -13.56235 -13.32717 -13.20807 -12.96762 -12.86889 -12.75209 -12.68408 -12.37810 -12.25652 -12.20544 -12.17310 -12.11791 -11.97656 -11.74761 -11.64441 -11.43964 -11.42111 -11.20389 -11.03746 -10.82005 -10.39048 -9.92397 -9.40477 -9.30806 -7.96829 -5.32102 1.37188 1.41498 1.49077 1.74251 2.34383 2.50655 3.03422 3.04734 3.32799 3.46748 3.68006 3.75298 3.79990 3.85962 3.91587 4.00929 4.04743 4.09049 4.18924 4.20303 4.33014 4.42879 4.44693 4.51049 4.57491 4.61608 4.68344 4.69453 4.71410 4.73351 4.76890 4.82299 4.85605 4.90103 4.95460 5.00975 5.05170 5.06923 5.11167 5.17568 5.21526 5.25482 5.27275 5.27478 5.31856 5.59860 5.83839 5.91897 6.08277 6.24971 6.33478 6.68465 7.11414 7.37094 7.82624 8.04053 9.24719 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002591 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.493323 B =10805.903932 C =11852.598812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.062 4.062 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.309 1.309 6 H -0.246 1.246 7 C -0.203 4.203 8 H 0.050 0.950 9 N -0.731 5.731 10 C 0.192 3.808 11 C 0.127 3.873 12 N -0.700 5.700 13 C 0.502 3.498 14 O -0.596 6.596 15 C -0.130 4.130 16 C -0.094 4.094 17 C 0.053 3.947 18 N -0.532 5.532 19 C 0.028 3.972 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.032 3.968 23 C -0.146 4.146 24 C 0.059 3.941 25 O -0.395 6.395 26 C 0.076 3.924 27 C -0.150 4.150 28 H 0.253 0.747 29 H 0.368 0.632 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.408 0.592 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.039 0.961 50 H 0.118 0.882 51 H 0.037 0.963 52 H 0.097 0.903 53 H 0.052 0.948 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.089 -2.284 -13.884 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.237 1.237 6 H -0.170 1.170 7 C -0.335 4.335 8 H 0.068 0.932 9 N -0.375 5.375 10 C 0.102 3.898 11 C 0.000 4.000 12 N -0.350 5.350 13 C 0.290 3.710 14 O -0.478 6.478 15 C -0.170 4.170 16 C -0.132 4.132 17 C -0.075 4.075 18 N -0.256 5.256 19 C -0.099 4.099 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.096 4.096 23 C -0.184 4.184 24 C -0.017 4.017 25 O -0.314 6.314 26 C -0.001 4.001 27 C -0.190 4.190 28 H 0.062 0.938 29 H 0.202 0.798 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.244 0.756 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.057 0.943 50 H 0.136 0.864 51 H 0.056 0.944 52 H 0.116 0.884 53 H 0.070 0.930 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.045 -3.617 -13.771 20.715 hybrid contribution -1.330 2.126 0.201 2.516 sum 13.715 -1.491 -13.570 19.351 Atomic orbital electron populations 1.69900 1.07391 1.26238 1.60251 1.25417 0.95791 1.00913 1.03197 0.85547 0.78851 0.80078 0.78021 1.20294 1.23719 1.17009 1.18685 0.82311 0.92646 1.39817 0.93193 1.42689 1.02292 1.03627 1.88882 1.20002 0.92054 0.86021 0.91761 1.21590 0.98848 0.94472 0.85053 1.45695 1.63143 1.21181 1.04971 1.21303 0.77065 0.86393 0.86192 1.90650 1.46074 1.23056 1.88032 1.21617 1.05586 0.99421 0.90347 1.21237 1.01057 0.98709 0.92231 1.22297 1.02058 0.94172 0.89021 1.64800 1.21822 1.36276 1.02739 1.23251 0.88806 0.99675 0.98218 1.22500 1.00693 0.99619 0.93313 1.22410 0.96970 0.98472 0.98800 1.22956 1.00385 0.95613 0.90651 1.22382 0.93595 1.02891 0.99484 1.22686 1.00625 0.93538 0.84869 1.87826 1.23394 1.76394 1.43822 1.22347 0.81194 0.98663 0.97895 1.22381 1.01268 0.99345 0.95974 0.93797 0.79808 0.91556 0.95593 0.75560 0.88114 0.85537 0.91853 0.93577 0.94306 0.88895 0.91179 0.94418 0.90246 0.90714 0.90882 0.89803 0.93516 0.89620 0.88813 0.88927 0.94300 0.86378 0.94424 0.88450 0.92963 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.45 13.97 21.65 0.30 -61.15 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 42.09 27.68 68.60 1.90 43.99 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.25 -9.52 6.60 99.48 0.66 -8.87 16 7 C -0.20 -10.45 9.17 84.04 0.77 -9.67 16 8 H 0.05 2.97 7.01 -2.91 -0.02 2.95 16 9 N -0.73 -28.57 3.48 -302.82 -1.06 -29.62 16 10 C 0.19 6.17 0.41 3.72 0.00 6.17 16 11 C 0.13 4.36 4.40 86.38 0.38 4.74 16 12 N -0.70 -21.40 5.16 -463.07 -2.39 -23.79 16 13 C 0.50 16.28 7.83 87.66 0.69 16.97 16 14 O -0.60 -24.71 15.98 -3.03 -0.05 -24.76 16 15 C -0.13 -2.93 5.70 29.85 0.17 -2.76 16 16 C -0.09 -2.28 4.16 30.59 0.13 -2.15 16 17 C 0.05 1.02 5.03 86.30 0.43 1.45 16 18 N -0.53 -10.91 5.40 -883.04 -4.76 -15.68 16 19 C 0.03 0.60 5.10 86.65 0.44 1.04 16 20 C -0.12 -2.01 7.06 31.80 0.22 -1.79 16 21 C -0.13 -1.78 6.93 31.47 0.22 -1.56 16 22 C 0.03 0.50 6.69 86.44 0.58 1.08 16 23 C -0.15 -3.44 4.79 30.69 0.15 -3.30 16 24 C 0.06 1.47 6.67 72.02 0.48 1.95 16 25 O -0.40 -11.83 10.77 -148.98 -1.60 -13.43 16 26 C 0.08 2.45 6.68 72.01 0.48 2.93 16 27 C -0.15 -4.98 4.75 30.68 0.15 -4.83 16 28 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.37 13.57 4.81 -92.71 -0.45 13.13 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.13 7.60 -2.38 -0.02 1.11 16 32 H 0.41 10.56 7.32 -92.70 -0.68 9.88 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.05 1.34 6.75 -2.39 -0.02 1.33 16 37 H 0.04 0.74 7.81 -2.39 -0.02 0.72 16 38 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 40 H 0.04 0.85 8.00 -2.39 -0.02 0.83 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.72 7.57 -2.39 -0.02 0.70 16 46 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 47 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.09 1.79 7.22 -2.39 -0.02 1.78 16 49 H 0.04 1.08 7.20 -2.39 -0.02 1.06 16 50 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 52 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 53 H 0.05 2.06 7.06 -2.38 -0.02 2.04 16 54 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.97 410.17 -2.20 -74.17 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.30 Total: 42.96 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.75 Total: 7.31 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -7.91 Total: -130.24 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.65 Total: -38.19 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.90 Total: 43.99 kcal Total: -71.97 -2.20 -74.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484191721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.152 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds