Wall clock time and date at job start Sat Apr 11 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 110.99975 * 2 1 4 4 C 1.52994 * 109.47571 * 66.04485 * 3 2 1 5 5 C 1.53000 * 109.47741 * 180.02562 * 4 3 2 6 6 N 1.46493 * 109.47498 * 180.02562 * 5 4 3 7 7 C 1.46501 * 119.99844 * 270.00025 * 6 5 4 8 8 C 1.34775 * 120.00623 * 89.99364 * 6 5 4 9 9 O 1.21289 * 119.99544 * 354.72291 * 8 6 5 10 10 C 1.50700 * 120.00350 * 174.71674 * 8 6 5 11 11 C 1.52994 * 110.01566 * 59.99656 * 10 8 6 12 12 C 1.54268 * 110.03232 * 298.60340 * 10 8 6 13 13 C 1.54962 * 104.15909 * 217.13484 * 12 10 8 14 14 C 1.54893 * 102.77855 * 37.89083 * 13 12 10 15 15 C 1.53874 * 110.03007 * 181.38503 * 10 8 6 16 16 C 1.46903 * 111.00253 * 236.04443 * 2 1 3 17 17 C 1.50698 * 109.46882 * 293.95389 * 16 2 1 18 18 O 1.21296 * 120.00195 * 359.97438 * 17 16 2 19 19 N 1.34780 * 120.00008 * 180.02562 * 17 16 2 20 20 C 1.37096 * 120.00002 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00539 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99719 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99942 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47154 * 89.99781 * 24 22 20 26 26 H 1.48493 * 109.47141 * 209.99940 * 24 22 20 27 27 H 1.48508 * 109.47058 * 329.99934 * 24 22 20 28 28 H 1.08990 * 109.46963 * 60.00807 * 1 2 3 29 29 H 1.09007 * 109.46726 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46965 * 300.00169 * 1 2 3 31 31 H 1.09002 * 109.47268 * 306.04515 * 3 2 1 32 32 H 1.09003 * 109.47410 * 186.04874 * 3 2 1 33 33 H 1.09002 * 109.47255 * 60.00023 * 4 3 2 34 34 H 1.09003 * 109.47071 * 300.00596 * 4 3 2 35 35 H 1.09002 * 109.46758 * 299.99788 * 5 4 3 36 36 H 1.09002 * 109.47022 * 59.99520 * 5 4 3 37 37 H 1.08999 * 109.47848 * 94.59593 * 7 6 5 38 38 H 1.09003 * 109.47313 * 214.59752 * 7 6 5 39 39 H 1.09008 * 109.47332 * 334.59318 * 7 6 5 40 40 H 1.08999 * 109.47388 * 60.69776 * 11 10 8 41 41 H 1.09005 * 109.47368 * 180.70048 * 11 10 8 42 42 H 1.09005 * 109.47230 * 300.69719 * 11 10 8 43 43 H 1.08991 * 110.48751 * 335.78142 * 12 10 8 44 44 H 1.08997 * 110.48546 * 98.42874 * 12 10 8 45 45 H 1.09005 * 110.72470 * 279.57765 * 13 12 10 46 46 H 1.09000 * 110.92615 * 156.29561 * 13 12 10 47 47 H 1.09003 * 110.48867 * 203.40968 * 14 13 12 48 48 H 1.08997 * 110.49258 * 80.75935 * 14 13 12 49 49 H 1.09001 * 110.03122 * 238.56885 * 15 10 8 50 50 H 1.08996 * 110.03520 * 359.95599 * 15 10 8 51 51 H 1.09002 * 109.46836 * 53.94902 * 16 2 1 52 52 H 1.08997 * 109.47204 * 173.95203 * 16 2 1 53 53 H 0.96996 * 119.99614 * 359.97438 * 19 17 16 54 54 H 0.97004 * 119.99481 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 7 1.8312 4.1427 2.5804 7 6 0.5743 4.8862 2.6971 8 6 2.6672 4.0629 3.6345 9 8 3.6602 3.3694 3.5697 10 6 2.3684 4.8354 4.8934 11 6 1.0200 4.3978 5.4687 12 6 2.3490 6.3484 4.5930 13 6 2.9844 6.9928 5.8510 14 6 4.1029 5.9879 6.2228 15 6 3.4828 4.6060 5.9295 16 6 1.9955 -0.7660 -1.1376 17 6 1.6370 -2.2204 -0.9727 18 8 1.0055 -2.5833 -0.0028 19 7 2.0190 -3.1182 -1.9026 20 6 1.6924 -4.4413 -1.7529 21 1 1.1294 -4.7643 -0.8897 22 6 2.0858 -5.3667 -2.7119 23 7 2.7705 -4.9737 -3.7624 24 14 1.6415 -7.1696 -2.5076 25 1 0.3291 -7.4320 -3.1514 26 1 2.6838 -8.0118 -3.1473 27 1 1.5581 -7.4981 -1.0617 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.0658 1.5016 2.1491 34 1 0.5472 2.0844 1.4264 35 1 3.2635 3.4594 1.2095 36 1 1.7446 4.0417 0.4870 37 1 -0.1943 4.2370 3.1165 38 1 0.7201 5.7460 3.3510 39 1 0.2618 5.2289 1.7106 40 1 1.0560 3.3359 5.7120 41 1 0.8070 4.9704 6.3714 42 1 0.2360 4.5755 4.7324 43 1 2.9462 6.5694 3.7085 44 1 1.3251 6.6978 4.4604 45 1 2.2529 7.0716 6.6553 46 1 3.4057 7.9704 5.6169 47 1 4.3583 6.0749 7.2789 48 1 4.9837 6.1503 5.6017 49 1 3.0627 4.1839 6.8424 50 1 4.2393 3.9355 5.5220 51 1 1.5611 -0.3873 -2.0628 52 1 3.0798 -0.6611 -1.1756 53 1 2.5244 -2.8281 -2.6780 54 1 3.0448 -5.6198 -4.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484752306.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:37 Heat of formation + Delta-G solvation = -90.586710 kcal Electronic energy + Delta-G solvation = -29960.425063 eV Core-core repulsion = 25931.253331 eV Total energy + Delta-G solvation = -4029.171731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.75847 -40.40241 -38.69786 -38.05769 -36.85838 -35.89297 -33.59001 -33.26598 -31.81638 -29.75906 -29.37314 -28.10503 -27.57982 -26.73190 -26.10892 -24.43349 -22.12487 -21.66994 -21.59714 -20.98566 -19.86835 -19.62463 -17.93243 -17.78627 -17.29058 -16.74645 -16.67482 -16.49598 -16.26082 -16.02325 -15.81164 -15.61437 -15.16516 -15.08475 -14.87986 -14.64107 -14.42377 -13.90339 -13.76679 -13.56239 -13.48339 -13.32778 -13.29563 -13.03403 -12.90384 -12.82484 -12.68349 -12.56836 -12.53014 -12.40917 -12.32158 -12.12896 -11.98870 -11.73099 -11.65888 -11.58400 -11.49272 -11.46049 -11.38793 -10.59188 -10.29833 -10.00986 -9.65963 -9.18469 -8.47210 -5.95953 1.36909 1.40332 1.53472 1.60915 2.01512 2.04335 2.28164 2.79578 3.19310 3.38669 3.41800 3.55692 3.71976 3.90302 3.99481 4.14311 4.15600 4.26674 4.33475 4.36663 4.38828 4.39710 4.45429 4.49156 4.51375 4.53993 4.56392 4.60815 4.64390 4.68877 4.76820 4.78536 4.82038 4.93356 4.97696 5.01188 5.09507 5.09774 5.13725 5.16024 5.23396 5.28091 5.34100 5.39208 5.40363 5.46228 5.61712 5.88585 6.07771 6.23943 6.40196 6.60346 7.12313 7.18228 7.55554 8.11909 8.70240 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026310 B = 0.001713 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.967949 B =16345.687437 C =16597.689969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.546 5.546 3 C 0.062 3.938 4 C -0.116 4.116 5 C 0.121 3.879 6 N -0.611 5.611 7 C 0.054 3.946 8 C 0.512 3.488 9 O -0.587 6.587 10 C -0.081 4.081 11 C -0.150 4.150 12 C -0.108 4.108 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.121 4.121 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.052 0.948 51 H 0.071 0.929 52 H 0.104 0.896 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 30.991 13.503 34.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.003 4.003 6 N -0.342 5.342 7 C -0.087 4.087 8 C 0.302 3.698 9 O -0.467 6.467 10 C -0.084 4.084 11 C -0.207 4.207 12 C -0.146 4.146 13 C -0.154 4.154 14 C -0.162 4.162 15 C -0.159 4.159 16 C -0.073 4.073 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.123 0.877 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.824 30.062 14.359 33.534 hybrid contribution 0.221 -1.180 -1.212 1.706 sum -3.603 28.882 13.147 31.937 Atomic orbital electron populations 1.22404 0.86715 1.02092 1.00613 1.61458 1.09111 1.13955 1.42586 1.22078 1.00297 0.86822 0.97361 1.21771 1.01358 0.95516 0.96848 1.21446 1.00737 0.92168 0.85924 1.47870 1.21823 1.52659 1.11891 1.22614 0.83929 0.97025 1.05162 1.21265 0.81965 0.80822 0.85760 1.90669 1.30469 1.42576 1.82985 1.21430 0.98471 0.96807 0.91678 1.22231 0.94293 1.01136 1.03063 1.22575 1.02841 0.90309 0.98844 1.22518 0.97466 0.98126 0.97282 1.22363 0.98320 0.93833 1.01669 1.22256 0.97105 0.98800 0.97771 1.21726 1.01870 0.90234 0.93436 1.20806 0.83725 0.88840 0.83885 1.90458 1.45268 1.81476 1.32983 1.41934 1.50027 1.07055 1.22174 1.19657 1.34456 0.84084 1.08104 0.90427 1.26050 0.96232 1.04376 0.94669 1.69677 1.38057 1.37213 1.11180 0.84918 0.78320 0.76710 0.78305 1.19445 1.19473 1.19982 0.94698 0.92933 0.90538 0.92368 0.90857 0.94559 0.90951 0.91914 0.87187 0.91593 0.88077 0.88893 0.94101 0.89306 0.89185 0.92179 0.87578 0.89599 0.90213 0.90449 0.92862 0.90719 0.92931 0.91078 0.87745 0.77021 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 8.96 127.69 1.14 2.12 16 2 N -0.55 -19.03 4.50 -927.07 -4.17 -23.20 16 3 C 0.06 1.58 4.96 86.30 0.43 2.01 16 4 C -0.12 -2.77 5.46 30.59 0.17 -2.60 16 5 C 0.12 2.26 5.41 86.38 0.47 2.72 16 6 N -0.61 -10.60 2.87 -846.75 -2.43 -13.03 16 7 C 0.05 0.43 8.73 127.77 1.12 1.55 16 8 C 0.51 11.79 6.34 87.66 0.56 12.35 16 9 O -0.59 -19.71 14.84 -3.06 -0.05 -19.76 16 10 C -0.08 -1.24 0.61 -52.20 -0.03 -1.27 16 11 C -0.15 -1.71 7.85 71.98 0.56 -1.14 16 12 C -0.11 -1.01 4.62 31.70 0.15 -0.87 16 13 C -0.12 -0.95 6.91 31.91 0.22 -0.73 16 14 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16 15 C -0.12 -2.20 6.05 31.32 0.19 -2.01 16 16 C 0.06 2.16 5.45 85.56 0.47 2.63 16 17 C 0.44 22.00 7.47 87.66 0.66 22.66 16 18 O -0.62 -35.54 13.91 -3.08 -0.04 -35.59 16 19 N -0.57 -30.60 5.29 -306.98 -1.62 -32.23 16 20 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 24 Si 0.99 43.99 29.55 68.60 2.03 46.02 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 2.20 5.83 -2.38 -0.01 2.19 16 30 H 0.08 2.21 6.47 -2.39 -0.02 2.19 16 31 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.07 1.88 7.93 -2.39 -0.02 1.86 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.58 6.55 -2.39 -0.02 1.56 16 35 H 0.06 1.45 7.50 -2.39 -0.02 1.43 16 36 H 0.11 1.31 7.86 -2.39 -0.02 1.29 16 37 H 0.07 0.50 6.92 -2.39 -0.02 0.49 16 38 H 0.10 0.45 3.46 -2.39 -0.01 0.45 16 39 H 0.09 0.41 7.84 -2.38 -0.02 0.39 16 40 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 0.69 4.25 -2.38 -0.01 0.68 16 43 H 0.06 0.71 7.85 -2.39 -0.02 0.69 16 44 H 0.11 0.40 6.04 -2.39 -0.01 0.38 16 45 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.07 1.20 7.67 -2.39 -0.02 1.19 16 50 H 0.05 1.35 6.39 -2.39 -0.02 1.34 16 51 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 52 H 0.10 3.51 7.93 -2.39 -0.02 3.49 16 53 H 0.40 19.98 7.90 -92.71 -0.73 19.25 16 54 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -79.32 411.41 1.74 -77.57 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.16 Total: 33.58 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 7.59 Total: 17.03 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -7.94 Total: -118.86 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.09 Total: -55.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -79.32 1.74 -77.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484752306.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.014 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds