Wall clock time and date at job start Sat Apr 11 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.52631 * 2 1 4 4 C 1.53197 * 109.48703 * 239.91098 * 2 1 3 5 5 N 1.46925 * 108.76466 * 185.40071 * 4 2 1 6 6 C 1.36936 * 120.62871 * 233.59259 * 5 4 2 7 7 H 1.08004 * 119.99861 * 151.85154 * 6 5 4 8 8 C 1.38812 * 119.99986 * 331.84636 * 6 5 4 9 9 N 1.31616 * 120.00464 * 343.07374 * 8 6 5 10 10 Si 1.86805 * 119.99681 * 163.07123 * 8 6 5 11 11 H 1.48496 * 109.47457 * 90.00238 * 10 8 6 12 12 H 1.48502 * 109.46947 * 210.00045 * 10 8 6 13 13 H 1.48503 * 109.47221 * 329.99761 * 10 8 6 14 14 C 1.46923 * 118.73982 * 53.62032 * 5 4 2 15 15 C 1.53191 * 108.77532 * 306.38635 * 14 5 4 16 16 C 1.53038 * 109.49816 * 120.08162 * 2 1 3 17 17 H 1.08999 * 109.45992 * 61.30554 * 16 2 1 18 18 N 1.46497 * 109.46203 * 301.33369 * 16 2 1 19 19 C 1.34777 * 120.00418 * 154.96623 * 18 16 2 20 20 O 1.21280 * 119.99865 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00033 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46754 * 180.02562 * 21 19 18 23 23 N 1.46902 * 109.46756 * 179.97438 * 22 21 19 24 24 C 1.47009 * 111.00581 * 293.63685 * 23 22 21 25 25 C 1.53091 * 109.25977 * 177.61064 * 24 23 22 26 26 O 1.43015 * 109.26191 * 56.84699 * 25 24 23 27 27 C 1.43011 * 113.73876 * 301.33342 * 26 25 24 28 28 C 1.47019 * 110.99709 * 170.00190 * 23 22 21 29 29 H 1.09001 * 109.46923 * 299.92436 * 1 2 3 30 30 H 1.09005 * 109.47152 * 59.91786 * 1 2 3 31 31 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47076 * 180.08254 * 3 2 1 33 33 H 1.08998 * 109.47073 * 300.08075 * 3 2 1 34 34 H 1.08999 * 109.47222 * 60.08030 * 3 2 1 35 35 H 1.09001 * 109.58068 * 65.62132 * 4 2 1 36 36 H 1.08993 * 109.59734 * 305.19099 * 4 2 1 37 37 H 0.96996 * 120.00419 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.58715 * 186.59959 * 14 5 4 39 39 H 1.08998 * 109.70721 * 66.24171 * 14 5 4 40 40 H 1.08996 * 109.49930 * 294.68958 * 15 14 5 41 41 H 1.08994 * 109.52865 * 174.60285 * 15 14 5 42 42 H 0.97009 * 120.00068 * 334.97643 * 18 16 2 43 43 H 1.08995 * 109.47428 * 60.01000 * 21 19 18 44 44 H 1.08997 * 109.47305 * 300.00214 * 21 19 18 45 45 H 1.09000 * 109.47556 * 300.00128 * 22 21 19 46 46 H 1.09002 * 109.47130 * 60.00850 * 22 21 19 47 47 H 1.09004 * 109.50499 * 297.54849 * 24 23 22 48 48 H 1.08997 * 109.50656 * 57.67214 * 24 23 22 49 49 H 1.09007 * 109.50614 * 296.90913 * 25 24 23 50 50 H 1.09006 * 109.54394 * 176.80548 * 25 24 23 51 51 H 1.09007 * 109.50706 * 298.73205 * 27 26 25 52 52 H 1.08994 * 109.54544 * 178.62603 * 27 26 25 53 53 H 1.09006 * 109.50746 * 302.32774 * 28 23 22 54 54 H 1.09001 * 109.50666 * 62.41640 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0410 -0.7240 -1.2496 5 7 3.5043 -0.8291 -1.1697 6 6 4.2930 -0.3792 -2.1947 7 1 5.2957 -0.0324 -1.9924 8 6 3.8040 -0.3691 -3.4938 9 7 2.7408 -1.0809 -3.8024 10 14 4.6549 0.6550 -4.8041 11 1 5.7014 -0.1622 -5.4690 12 1 3.6577 1.0971 -5.8118 13 1 5.2819 1.8442 -4.1733 14 6 4.1052 -1.4265 0.0306 15 6 3.5709 -0.6948 1.2658 16 6 2.0407 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2352 18 7 1.5266 -0.0530 2.4453 19 6 1.3979 -0.7384 3.5986 20 8 1.7082 -1.9099 3.6456 21 6 0.8684 -0.0491 4.8297 22 6 0.8234 -1.0438 5.9914 23 7 0.3079 -0.3717 7.1917 24 6 1.2433 0.6611 7.6602 25 6 0.6413 1.3747 8.8734 26 8 0.3455 0.4116 9.8884 27 6 -0.5633 -0.6088 9.4665 28 6 0.0265 -1.3426 8.2592 29 1 -0.3633 0.5127 0.8907 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1313 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8892 34 1 1.6797 1.9558 0.8907 35 1 1.7632 -0.1582 -2.1389 36 1 1.6051 -1.7218 -1.2979 37 1 2.3993 -1.0741 -4.7102 38 1 5.1895 -1.3243 -0.0141 39 1 3.8398 -2.4821 0.0879 40 1 3.9157 0.3391 1.2537 41 1 3.9335 -1.1888 2.1672 42 1 1.2785 0.8841 2.4078 43 1 -0.1360 0.3255 4.6327 44 1 1.5223 0.7833 5.0896 45 1 0.1698 -1.8765 5.7318 46 1 1.8280 -1.4180 6.1884 47 1 2.1875 0.1956 7.9431 48 1 1.4175 1.3832 6.8625 49 1 -0.2753 1.8852 8.5777 50 1 1.3549 2.1028 9.2594 51 1 -1.5151 -0.1561 9.1880 52 1 -0.7212 -1.3160 10.2807 53 1 -0.6877 -2.0830 7.8988 54 1 0.9510 -1.8406 8.5512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484939461.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:14 Heat of formation + Delta-G solvation = -82.284713 kcal Electronic energy + Delta-G solvation = -31042.697888 eV Core-core repulsion = 27013.886158 eV Total energy + Delta-G solvation = -4028.811729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.39595 -40.51575 -39.53999 -36.99836 -36.23340 -34.25568 -33.85059 -32.60290 -32.01424 -31.01304 -28.17529 -28.07624 -27.60049 -26.60398 -25.00024 -24.41278 -23.12951 -22.29415 -21.38922 -21.12252 -19.65346 -18.87733 -18.14605 -17.22851 -17.10230 -16.98275 -16.75161 -16.66973 -16.04516 -15.90308 -15.70819 -15.57032 -15.30974 -15.21746 -14.96454 -14.81937 -14.55638 -14.08023 -14.00556 -13.77591 -13.30363 -13.25655 -13.04934 -13.00262 -12.87854 -12.70057 -12.60393 -12.49697 -12.41575 -12.32823 -12.29255 -11.92873 -11.86215 -11.82301 -11.62362 -11.45902 -11.30565 -11.17342 -10.79758 -10.65021 -10.53312 -9.92763 -9.47117 -8.67329 -7.86361 -5.31593 1.47101 1.48694 1.58133 1.71355 2.15264 2.51801 2.81095 2.99729 3.29090 3.63960 3.74109 3.78367 3.89849 3.95113 3.98719 4.06029 4.13047 4.14120 4.22130 4.35229 4.35583 4.39251 4.46115 4.51992 4.60180 4.65407 4.68131 4.76047 4.81982 4.83717 4.87371 4.88381 4.92123 4.96618 4.98492 4.99659 5.04260 5.05356 5.12235 5.27433 5.31711 5.36917 5.44885 5.60987 5.62363 5.71604 5.76122 5.86768 5.92037 6.20066 6.39934 6.66060 7.15730 7.35170 7.85335 8.38742 9.20317 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.002062 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.653188 B =13579.000103 C =13591.930080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.194 3.806 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.066 0.934 8 C -0.049 4.049 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.289 1.289 12 H -0.293 1.293 13 H -0.268 1.268 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.049 0.951 18 N -0.707 5.707 19 C 0.510 3.490 20 O -0.591 6.591 21 C -0.123 4.123 22 C 0.077 3.923 23 N -0.536 5.536 24 C 0.010 3.990 25 C 0.062 3.938 26 O -0.409 6.409 27 C 0.065 3.935 28 C 0.015 3.985 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.063 0.937 36 H -0.017 1.017 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.001 0.999 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.413 0.587 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.025 0.975 47 H 0.031 0.969 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.112 0.888 51 H 0.066 0.934 52 H 0.112 0.888 53 H 0.095 0.905 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 8.310 24.345 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.177 4.177 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.193 1.193 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.071 3.929 17 H 0.067 0.933 18 N -0.359 5.359 19 C 0.297 3.703 20 O -0.471 6.471 21 C -0.163 4.163 22 C -0.051 4.051 23 N -0.261 5.261 24 C -0.118 4.118 25 C -0.015 4.015 26 O -0.328 6.328 27 C -0.012 4.012 28 C -0.113 4.113 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.001 0.999 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.251 0.749 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.124 0.876 49 H 0.086 0.914 50 H 0.130 0.870 51 H 0.084 0.916 52 H 0.130 0.870 53 H 0.113 0.887 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.564 7.718 24.292 26.889 hybrid contribution 1.149 -0.440 -1.488 1.931 sum -7.415 7.278 22.804 25.059 Atomic orbital electron populations 1.21720 0.93366 1.01174 1.02363 1.21322 0.95991 0.96990 0.94567 1.21667 1.01239 0.93678 1.01130 1.20621 0.82512 0.95013 0.95071 1.44267 1.02144 1.69570 1.16550 1.19441 0.98232 1.34502 0.86455 0.91620 1.25765 0.99429 1.00267 0.98935 1.70183 1.27257 1.41879 1.18807 0.85330 0.77417 0.79053 0.78956 1.21584 1.21894 1.19285 1.20960 0.96813 0.93699 0.86872 1.22228 0.95605 1.01471 0.97348 1.20532 0.92996 0.95495 0.83889 0.93303 1.46078 1.65460 1.15059 1.09291 1.21222 0.76937 0.86669 0.85445 1.90702 1.52135 1.18692 1.85608 1.21571 1.05008 0.99413 0.90300 1.21683 0.98404 0.95924 0.89116 1.62247 1.44720 1.14116 1.05061 1.22963 0.93754 0.95799 0.99287 1.22811 1.01029 0.90616 0.87002 1.87959 1.65917 1.40084 1.38815 1.22763 0.92161 0.90143 0.96118 1.22842 1.00727 0.95179 0.92565 0.90282 0.92677 0.94249 0.93126 0.93822 0.90728 0.91892 0.99887 0.94139 0.92509 0.98111 0.90714 0.92578 0.74928 0.85874 0.86636 0.90989 0.95715 0.95037 0.87573 0.91443 0.86961 0.91559 0.87034 0.88715 0.94973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.31 71.98 0.60 -3.12 16 2 C -0.09 -2.95 0.56 -52.10 -0.03 -2.98 16 3 C -0.12 -3.65 7.83 71.98 0.56 -3.09 16 4 C 0.19 9.16 3.98 86.36 0.34 9.50 16 5 N -0.60 -29.92 2.43 -699.11 -1.70 -31.61 16 6 C -0.26 -13.84 9.58 84.03 0.81 -13.03 16 7 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 8 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 9 N -0.94 -54.93 11.20 21.65 0.24 -54.69 16 10 Si 0.96 44.26 29.59 68.60 2.03 46.29 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 14 C 0.14 6.20 6.52 86.36 0.56 6.76 16 15 C -0.13 -4.44 5.31 30.67 0.16 -4.28 16 16 C 0.18 5.80 1.57 45.02 0.07 5.87 16 17 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 18 N -0.71 -16.82 4.29 -442.41 -1.90 -18.72 16 19 C 0.51 12.70 7.79 87.66 0.68 13.38 16 20 O -0.59 -20.66 15.64 -3.03 -0.05 -20.70 16 21 C -0.12 -1.91 5.64 29.85 0.17 -1.74 16 22 C 0.08 1.43 4.25 86.30 0.37 1.80 16 23 N -0.54 -8.27 4.73 -895.20 -4.23 -12.50 16 24 C 0.01 0.13 5.44 86.31 0.47 0.60 16 25 C 0.06 0.75 7.01 72.01 0.50 1.25 16 26 O -0.41 -6.79 10.83 -148.98 -1.61 -8.40 16 27 C 0.06 0.83 7.01 72.01 0.50 1.33 16 28 C 0.02 0.22 5.64 86.31 0.49 0.71 16 29 H 0.08 1.73 7.36 -2.39 -0.02 1.71 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.76 5.97 -2.39 -0.01 1.75 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.60 6.58 -2.39 -0.02 1.58 16 35 H 0.06 3.34 6.06 -2.39 -0.01 3.33 16 36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.06 2.39 7.93 -2.39 -0.02 2.38 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.07 2.48 6.33 -2.39 -0.02 2.46 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.41 7.10 6.66 -92.70 -0.62 6.48 16 43 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.12 1.27 6.51 -2.39 -0.02 1.25 16 45 H 0.07 1.53 8.00 -2.39 -0.02 1.51 16 46 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16 47 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.11 1.00 6.38 -2.39 -0.02 0.98 16 49 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.09 1.24 8.09 -2.38 -0.02 1.22 16 54 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -70.53 404.94 -0.28 -70.81 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.25 Total: 18.83 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.68 Total: 10.70 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.58 Total: -117.52 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.66 Total: -29.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.53 -0.28 -70.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484939461.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.473 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds