Wall clock time and date at job start Sat Apr 11 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47090 * 2 1 4 4 C 1.50694 * 110.43909 * 62.74719 * 3 2 1 5 5 O 1.21285 * 119.99788 * 242.51422 * 4 3 2 6 6 N 1.34776 * 120.00167 * 62.51784 * 4 3 2 7 7 C 1.46499 * 119.99975 * 174.68712 * 6 4 3 8 8 C 1.53009 * 109.46833 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46871 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99825 * 66.04930 * 10 9 8 12 12 C 1.46898 * 111.00504 * 189.99921 * 10 9 8 13 13 C 1.50699 * 109.47516 * 170.00188 * 12 10 9 14 14 O 1.21288 * 119.99913 * 0.02562 * 13 12 10 15 15 N 1.34776 * 119.99999 * 180.02562 * 13 12 10 16 16 C 1.37094 * 119.99685 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00231 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99589 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99611 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00121 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47162 * 90.00174 * 20 18 16 22 22 H 1.48499 * 109.47174 * 210.00200 * 20 18 16 23 23 H 1.48499 * 109.47514 * 330.00019 * 20 18 16 24 24 C 1.54892 * 110.59684 * 185.36637 * 3 2 1 25 25 C 1.54893 * 102.74810 * 156.67275 * 24 3 2 26 26 C 1.54258 * 104.19489 * 322.05441 * 25 24 3 27 27 C 1.53878 * 106.60039 * 23.61311 * 26 25 24 28 28 H 1.09003 * 109.47260 * 295.51704 * 1 2 3 29 29 H 1.09005 * 109.46559 * 55.51666 * 1 2 3 30 30 H 1.08993 * 109.47219 * 175.51254 * 1 2 3 31 31 H 1.08996 * 109.46918 * 239.99599 * 2 1 3 32 32 H 1.09002 * 109.46815 * 119.99769 * 2 1 3 33 33 H 0.96994 * 119.99682 * 354.68158 * 6 4 3 34 34 H 1.08997 * 109.47390 * 60.00119 * 7 6 4 35 35 H 1.08991 * 109.47378 * 299.99803 * 7 6 4 36 36 H 1.08994 * 109.47076 * 299.99790 * 8 7 6 37 37 H 1.08997 * 109.46705 * 60.00104 * 8 7 6 38 38 H 1.09000 * 109.47536 * 300.00444 * 9 8 7 39 39 H 1.09008 * 109.46835 * 60.00307 * 9 8 7 40 40 H 1.09003 * 109.47152 * 59.99629 * 11 10 9 41 41 H 1.09001 * 109.47345 * 179.97438 * 11 10 9 42 42 H 1.09003 * 109.47136 * 299.99673 * 11 10 9 43 43 H 1.08999 * 109.47373 * 290.00666 * 12 10 9 44 44 H 1.09000 * 109.46904 * 50.00090 * 12 10 9 45 45 H 0.97002 * 120.00235 * 0.02562 * 15 13 12 46 46 H 0.96998 * 120.00231 * 180.02562 * 19 18 16 47 47 H 1.08999 * 110.75509 * 274.98503 * 24 3 2 48 48 H 1.08997 * 110.75623 * 38.35639 * 24 3 2 49 49 H 1.09005 * 110.48562 * 203.37840 * 25 24 3 50 50 H 1.08995 * 110.48392 * 80.74051 * 25 24 3 51 51 H 1.09002 * 110.03846 * 264.32383 * 26 25 24 52 52 H 1.09007 * 110.02914 * 142.89858 * 26 25 24 53 53 H 1.08997 * 110.02680 * 240.71206 * 27 26 25 54 54 H 1.08997 * 110.03253 * 119.28072 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6058 2.1541 1.2553 5 8 0.8745 3.1191 1.1833 6 7 2.0300 1.7184 2.4581 7 6 1.7044 2.4768 3.6685 8 6 2.3000 1.7708 4.8883 9 6 1.9604 2.5631 6.1523 10 7 2.5317 1.8851 7.3235 11 6 3.9999 1.9077 7.2807 12 6 2.0322 2.4784 8.5711 13 6 2.4383 1.6136 9.7365 14 8 3.0809 0.6026 9.5466 15 7 2.0873 1.9635 10.9898 16 6 2.4562 1.1765 12.0500 17 1 3.0277 0.2759 11.8808 18 6 2.0939 1.5370 13.3421 19 7 2.4479 0.7829 14.3583 20 14 1.1047 3.0944 13.6346 21 1 -0.3451 2.7770 13.5828 22 1 1.4421 3.6517 14.9691 23 1 1.4308 4.0925 12.5846 24 6 3.5826 1.4750 -0.1356 25 6 3.8450 2.8871 -0.7155 26 6 2.6823 3.1123 -1.7038 27 6 1.5346 2.1938 -1.2489 28 1 -0.3634 0.4427 0.9274 29 1 -0.3632 0.5819 -0.8472 30 1 -0.3633 -1.0244 -0.0804 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.5509 0.9027 2.5222 34 1 0.6217 2.5391 3.7779 35 1 2.1201 3.4813 3.5907 36 1 1.8838 0.7664 4.9659 37 1 3.3827 1.7081 4.7790 38 1 2.3768 3.5675 6.0745 39 1 0.8777 2.6262 6.2617 40 1 4.3472 2.9409 7.2711 41 1 4.3969 1.3995 8.1595 42 1 4.3450 1.3999 6.3801 43 1 2.4550 3.4755 8.6939 44 1 0.9452 2.5471 8.5310 45 1 1.5730 2.7719 11.1417 46 1 2.1947 1.0343 15.2603 47 1 4.0585 1.3630 0.8386 48 1 3.9261 0.7042 -0.8254 49 1 4.8009 2.9131 -1.2388 50 1 3.8225 3.6351 0.0770 51 1 2.9943 2.8476 -2.7142 52 1 2.3619 4.1537 -1.6724 53 1 1.2897 1.4833 -2.0385 54 1 0.6573 2.7894 -0.9968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566505417.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:36 Heat of formation + Delta-G solvation = -112.099526 kcal Electronic energy + Delta-G solvation = -29580.603510 eV Core-core repulsion = 25550.498913 eV Total energy + Delta-G solvation = -4030.104597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.60920 -40.50735 -38.64119 -38.06154 -36.27784 -35.81870 -34.25455 -33.74623 -32.56308 -29.86887 -29.41867 -28.79482 -27.52694 -26.41974 -24.27494 -23.76079 -22.90949 -21.98980 -21.25325 -21.22322 -20.18458 -19.91441 -17.87142 -17.72609 -17.09654 -17.06685 -16.80556 -16.67597 -16.38082 -16.03522 -15.73103 -15.48827 -15.22077 -15.05362 -14.84425 -14.61828 -14.43846 -14.27341 -14.06228 -13.90097 -13.70243 -13.32227 -13.07738 -13.02418 -12.82808 -12.72855 -12.50528 -12.41445 -12.38054 -12.31664 -12.19659 -12.10676 -11.97378 -11.95824 -11.64743 -11.52397 -11.46325 -11.45034 -11.31660 -10.67136 -10.35081 -10.22233 -10.07596 -9.20006 -8.40509 -6.00863 1.30387 1.35791 1.44327 1.66499 1.97297 2.15655 2.23336 2.67586 3.15408 3.27410 3.44875 3.63696 3.67517 3.95866 3.98247 4.06768 4.12293 4.21054 4.23604 4.32309 4.36582 4.39679 4.43574 4.52924 4.55273 4.60499 4.60818 4.63936 4.69186 4.74484 4.77983 4.80305 4.88259 4.95401 5.06084 5.09166 5.09604 5.16421 5.18905 5.20009 5.25828 5.29879 5.33572 5.38859 5.45602 5.52787 5.54130 5.90972 6.02530 6.21519 6.56729 6.61092 6.89859 7.27092 7.41385 7.98837 8.77107 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026444 B = 0.001632 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.568063 B =17153.211984 C =17165.986813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.082 4.082 4 C 0.527 3.473 5 O -0.583 6.583 6 N -0.720 5.720 7 C 0.128 3.872 8 C -0.114 4.114 9 C 0.059 3.941 10 N -0.540 5.540 11 C 0.024 3.976 12 C 0.053 3.947 13 C 0.451 3.549 14 O -0.604 6.604 15 N -0.593 5.593 16 C -0.326 4.326 17 H 0.056 0.944 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.232 1.232 24 C -0.107 4.107 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.031 0.969 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.076 0.924 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.043 0.957 51 H 0.081 0.919 52 H 0.048 0.952 53 H 0.087 0.913 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 5.794 -34.022 34.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.085 4.085 4 C 0.314 3.686 5 O -0.463 6.463 6 N -0.372 5.372 7 C 0.004 3.996 8 C -0.152 4.152 9 C -0.069 4.069 10 N -0.265 5.265 11 C -0.124 4.124 12 C -0.078 4.078 13 C 0.239 3.761 14 O -0.488 6.488 15 N -0.236 5.236 16 C -0.456 4.456 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.156 1.156 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.146 4.146 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.121 0.879 49 H 0.102 0.898 50 H 0.062 0.938 51 H 0.100 0.900 52 H 0.067 0.933 53 H 0.106 0.894 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.370 5.284 -33.982 34.418 hybrid contribution -0.068 1.119 1.231 1.665 sum -1.439 6.403 -32.751 33.402 Atomic orbital electron populations 1.21835 0.96239 1.02293 1.01088 1.21597 0.95634 0.92552 1.04452 1.21733 0.98161 0.96595 0.92014 1.20856 0.78657 0.83444 0.85612 1.90657 1.38003 1.30022 1.87600 1.45926 1.56432 1.28947 1.05926 1.21168 1.00043 0.95082 0.83347 1.21628 1.01912 1.00001 0.91690 1.22080 1.00637 0.95480 0.88672 1.61483 1.08404 1.55604 1.00965 1.22464 0.87030 0.99726 1.03157 1.21839 1.02747 0.95334 0.87889 1.20898 0.83132 0.87826 0.84232 1.90510 1.43779 1.29428 1.85094 1.42053 1.51386 1.24395 1.05718 1.18998 1.34134 1.06512 0.85924 0.92594 1.26095 0.98767 1.02490 0.94034 1.69800 1.47150 1.40600 0.99998 0.85378 0.78978 0.77808 0.79438 1.18188 1.20084 1.15564 1.22654 0.91164 0.98081 1.02544 1.22385 0.99131 0.96698 0.98398 1.22126 0.95063 0.99103 0.99858 1.22155 0.98567 0.98314 0.95586 0.95004 0.92518 0.91183 0.88480 0.90461 0.75104 0.92318 0.92102 0.90631 0.90405 0.93440 0.89634 0.95073 0.93056 0.89906 0.90583 0.86289 0.77588 0.91199 0.90570 0.87898 0.89811 0.93778 0.90048 0.93337 0.89426 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.48 71.98 0.68 -1.27 16 2 C -0.10 -0.94 4.84 30.59 0.15 -0.80 16 3 C -0.08 -1.03 0.47 -51.86 -0.02 -1.05 16 4 C 0.53 10.01 5.32 87.66 0.47 10.47 16 5 O -0.58 -16.25 15.43 -3.05 -0.05 -16.30 16 6 N -0.72 -10.90 5.21 -463.06 -2.41 -13.32 16 7 C 0.13 2.14 5.68 86.38 0.49 2.63 16 8 C -0.11 -1.88 5.25 30.60 0.16 -1.72 16 9 C 0.06 1.17 4.96 86.30 0.43 1.60 16 10 N -0.54 -15.52 4.50 -927.05 -4.17 -19.70 16 11 C 0.02 0.70 8.96 127.69 1.14 1.84 16 12 C 0.05 1.62 5.45 85.56 0.47 2.08 16 13 C 0.45 20.28 7.47 87.66 0.66 20.94 16 14 O -0.60 -33.03 13.91 -3.05 -0.04 -33.07 16 15 N -0.59 -27.98 5.09 -306.99 -1.56 -29.54 16 16 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 17 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 18 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 19 N -0.93 -56.42 13.96 21.67 0.30 -56.12 16 20 Si 0.96 38.87 27.74 68.60 1.90 40.78 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 24 C -0.11 -0.95 5.80 31.89 0.18 -0.77 16 25 C -0.13 -1.50 6.61 31.67 0.21 -1.29 16 26 C -0.12 -1.57 6.80 31.32 0.21 -1.36 16 27 C -0.11 -1.51 4.63 31.32 0.14 -1.37 16 28 H 0.03 0.53 7.51 -2.39 -0.02 0.51 16 29 H 0.06 0.73 6.94 -2.38 -0.02 0.72 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.08 0.56 7.62 -2.39 -0.02 0.54 16 33 H 0.41 4.23 7.67 -92.71 -0.71 3.51 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.20 6.55 -2.39 -0.02 1.18 16 38 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 39 H 0.09 1.55 7.93 -2.38 -0.02 1.53 16 40 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 1.97 5.82 -2.39 -0.01 1.96 16 42 H 0.08 1.99 6.47 -2.39 -0.02 1.98 16 43 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.12 2.98 7.93 -2.39 -0.02 2.96 16 45 H 0.39 15.19 5.76 -92.71 -0.53 14.65 16 46 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 47 H 0.08 0.62 7.53 -2.39 -0.02 0.60 16 48 H 0.10 0.51 8.04 -2.39 -0.02 0.49 16 49 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 50 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 53 H 0.09 0.88 7.57 -2.39 -0.02 0.87 16 54 H 0.05 1.10 6.82 -2.39 -0.02 1.08 16 Total: -1.00 -80.87 417.45 0.25 -80.63 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.41 Total: 35.34 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.69 Total: 11.30 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -7.84 Total: -118.67 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.09 Total: -49.37 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.78 kcal Total: -80.87 0.25 -80.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566505417.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.471 kcal (2) G-P(sol) polarization free energy of solvation -80.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds