Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52995 * 109.47490 * 59.99635 * 8 6 5 10 10 C 1.53001 * 109.47207 * 299.99218 * 8 6 5 11 11 C 1.52998 * 109.47157 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47306 * 60.00300 * 11 10 8 13 13 C 1.52998 * 109.47303 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.46873 * 300.00136 * 12 11 10 15 15 C 1.52998 * 109.47592 * 59.99643 * 14 12 11 16 16 N 1.46906 * 109.47133 * 239.99822 * 2 1 3 17 17 C 1.46900 * 110.99628 * 85.00130 * 16 2 1 18 18 C 1.50695 * 109.46812 * 180.02562 * 17 16 2 19 19 O 1.21300 * 120.00382 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00008 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00097 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99627 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99684 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47306 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47337 * 119.99917 * 25 23 21 28 28 H 1.48504 * 109.47200 * 239.99864 * 25 23 21 29 29 H 1.09001 * 109.47386 * 300.00185 * 1 2 3 30 30 H 1.08998 * 109.47347 * 59.99643 * 1 2 3 31 31 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 33 33 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.08995 * 109.47139 * 60.00165 * 9 8 6 36 36 H 1.09003 * 109.47199 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.46983 * 299.99719 * 9 8 6 38 38 H 1.09001 * 109.47406 * 300.00436 * 10 8 6 39 39 H 1.09001 * 109.47038 * 60.00421 * 10 8 6 40 40 H 1.08998 * 109.47370 * 299.99625 * 11 10 8 41 41 H 1.09009 * 109.46771 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.47054 * 60.00027 * 12 11 10 43 43 H 1.08994 * 109.47481 * 179.97438 * 13 12 11 44 44 H 1.09000 * 109.47250 * 300.00684 * 13 12 11 45 45 H 1.09007 * 109.46897 * 59.99806 * 13 12 11 46 46 H 1.09001 * 109.47191 * 299.99807 * 14 12 11 47 47 H 1.09001 * 109.47143 * 179.97438 * 14 12 11 48 48 H 1.09000 * 109.47250 * 179.97438 * 15 14 12 49 49 H 1.09007 * 109.46897 * 60.00287 * 15 14 12 50 50 H 1.00901 * 110.99550 * 321.04873 * 16 2 1 51 51 H 1.09001 * 109.46958 * 300.00093 * 17 16 2 52 52 H 1.09000 * 109.47239 * 60.00122 * 17 16 2 53 53 H 0.96993 * 119.99819 * 359.97438 * 20 18 17 54 54 H 0.97005 * 119.99652 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1725 -1.4338 2.1883 7 8 3.5693 -1.8887 3.1371 8 6 5.6738 -1.5474 2.1249 9 6 6.2891 -0.1480 2.0627 10 6 6.0734 -2.3362 0.8763 11 6 7.5976 -2.4521 0.8123 12 6 8.1067 -3.1785 2.0589 13 6 9.6309 -3.2950 1.9946 14 6 7.7071 -2.3898 3.3075 15 6 6.1829 -2.2739 3.3715 16 7 2.0196 -0.6926 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5873 -0.5218 -3.5560 19 8 2.8677 -1.6989 -3.4702 20 7 2.7282 0.1205 -4.7325 21 6 3.1870 -0.5569 -5.8327 22 1 3.4359 -1.6051 -5.7564 23 6 3.3318 0.1051 -7.0457 24 7 3.0285 1.3803 -7.1384 25 14 3.9576 -0.8176 -8.5444 26 1 4.2252 -2.2319 -8.1790 27 1 2.9333 -0.7698 -9.6185 28 1 5.2113 -0.1849 -9.0275 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7199 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9823 -0.4629 0.4315 35 1 6.0046 0.4139 2.9523 36 1 7.3751 -0.2302 2.0173 37 1 5.9261 0.3693 1.1746 38 1 5.6351 -3.3332 0.9206 39 1 5.7104 -1.8189 -0.0119 40 1 8.0363 -1.4553 0.7680 41 1 7.8822 -3.0137 -0.0776 42 1 7.6681 -4.1754 2.1030 43 1 9.9936 -3.8121 2.8828 44 1 9.9151 -3.8570 1.1049 45 1 10.0699 -2.2982 1.9502 46 1 8.1458 -1.3930 3.2633 47 1 8.0694 -2.9076 4.1956 48 1 5.8983 -1.7123 4.2613 49 1 5.7442 -3.2708 3.4157 50 1 1.4495 -1.4980 -1.4100 51 1 1.0870 0.6163 -2.5525 52 1 2.7588 1.0462 -2.1182 53 1 2.5043 1.0617 -4.8010 54 1 3.1299 1.8426 -7.9852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567082351.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -131.239132 kcal Electronic energy + Delta-G solvation = -30639.881487 eV Core-core repulsion = 26608.946935 eV Total energy + Delta-G solvation = -4030.934552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61320 -40.20533 -39.27111 -38.04687 -35.95689 -35.14015 -34.37099 -33.25236 -31.95784 -31.58148 -29.18895 -27.95542 -27.52052 -26.32290 -25.59468 -23.60202 -22.93042 -21.99680 -21.10087 -21.00296 -19.90658 -19.51438 -18.24724 -17.64012 -17.20624 -16.86737 -16.54520 -16.32134 -16.01725 -15.72911 -15.57211 -15.39374 -15.13897 -14.90447 -14.80727 -14.45083 -14.36167 -13.84205 -13.70134 -13.60878 -13.45172 -13.38767 -13.27585 -13.17640 -13.06672 -12.84199 -12.77912 -12.65220 -12.54058 -12.38156 -12.26420 -12.11383 -11.91761 -11.86307 -11.80111 -11.57767 -11.49515 -11.07540 -10.87741 -10.53821 -10.31859 -9.99066 -9.95686 -9.34131 -8.45628 -5.93530 1.36953 1.42765 1.56165 1.69242 2.08477 2.28923 2.32630 2.90766 3.22431 3.52371 3.60806 3.67064 3.74824 3.85453 4.08398 4.11292 4.15482 4.23292 4.29176 4.32230 4.36183 4.44644 4.49804 4.58635 4.61973 4.63610 4.65702 4.70664 4.77787 4.83392 4.88449 4.89209 4.98891 5.00172 5.03885 5.05036 5.13581 5.16286 5.19266 5.24643 5.28014 5.42386 5.42869 5.44212 5.48606 5.55656 5.65677 5.90091 6.11043 6.35635 6.62220 6.65500 7.15161 7.31584 7.59410 8.14886 8.71910 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.002782 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.584285 B =10062.185079 C =12392.583658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.101 0.899 4 C 0.134 3.866 5 N -0.705 5.705 6 C 0.515 3.485 7 O -0.591 6.591 8 C -0.070 4.070 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.111 4.111 12 C -0.093 4.093 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.090 4.090 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.344 0.656 51 H 0.067 0.933 52 H 0.109 0.891 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 1.122 19.163 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.119 0.881 4 C 0.009 3.991 5 N -0.355 5.355 6 C 0.302 3.698 7 O -0.472 6.472 8 C -0.073 4.073 9 C -0.197 4.197 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.112 4.112 13 C -0.201 4.201 14 C -0.145 4.145 15 C -0.128 4.128 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.163 0.837 51 H 0.085 0.915 52 H 0.127 0.873 53 H 0.230 0.770 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.548 0.251 19.867 20.920 hybrid contribution -1.038 0.045 -1.619 1.924 sum 5.510 0.296 18.248 19.064 Atomic orbital electron populations 1.22381 0.94936 1.02732 1.03506 1.21854 0.94335 0.98436 0.88628 0.88128 1.21345 0.80165 1.00192 0.97349 1.45861 1.07852 1.58443 1.23317 1.21071 0.90798 0.76365 0.81530 1.90632 1.71308 1.49967 1.35266 1.20752 0.89557 0.98968 0.98025 1.21954 1.02602 0.92634 1.02517 1.21514 0.97756 0.99250 0.95660 1.21616 0.93498 1.01752 0.97958 1.21146 0.96496 0.98841 0.94676 1.21797 0.94217 1.02253 1.01849 1.21633 0.93737 1.01349 0.97798 1.21306 0.96424 0.99509 0.95533 1.60153 1.58426 1.09047 1.02893 1.21575 1.01296 0.95284 0.88478 1.20913 0.83297 0.87992 0.85158 1.90513 1.56518 1.18350 1.85460 1.41934 1.58429 1.12584 1.08194 1.19660 1.41928 0.95831 0.88534 0.90474 1.25971 0.97345 0.96579 1.01274 1.69670 1.48816 1.09617 1.28029 0.84928 0.78194 0.78093 0.77497 1.19888 1.19790 1.19600 0.90017 0.91880 0.92511 0.93331 0.90540 0.75184 0.92037 0.89296 0.91740 0.93406 0.91808 0.90174 0.91990 0.92357 0.92141 0.92860 0.91943 0.90266 0.90997 0.92021 0.93447 0.83676 0.91534 0.87294 0.76988 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 71.98 0.66 -2.36 16 2 C 0.08 1.54 2.75 44.91 0.12 1.67 16 3 H 0.10 1.72 7.80 -2.39 -0.02 1.71 16 4 C 0.13 3.02 5.37 86.38 0.46 3.49 16 5 N -0.70 -17.02 5.17 -463.05 -2.40 -19.42 16 6 C 0.52 13.95 6.48 87.66 0.57 14.52 16 7 O -0.59 -20.15 15.98 -3.04 -0.05 -20.20 16 8 C -0.07 -1.50 0.61 -52.93 -0.03 -1.53 16 9 C -0.14 -2.31 7.68 71.98 0.55 -1.75 16 10 C -0.10 -2.33 4.63 30.59 0.14 -2.19 16 11 C -0.11 -2.02 4.93 30.59 0.15 -1.87 16 12 C -0.09 -1.51 2.72 -10.80 -0.03 -1.54 16 13 C -0.14 -1.91 9.19 71.98 0.66 -1.24 16 14 C -0.11 -1.66 4.93 30.59 0.15 -1.51 16 15 C -0.09 -1.87 4.02 30.59 0.12 -1.75 16 16 N -0.67 -18.51 5.31 -495.58 -2.63 -21.14 16 17 C 0.07 1.99 5.96 85.56 0.51 2.50 16 18 C 0.44 19.58 7.82 87.65 0.69 20.27 16 19 O -0.62 -32.95 15.78 -3.09 -0.05 -33.00 16 20 N -0.57 -28.15 5.29 -306.97 -1.62 -29.78 16 21 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 25 Si 0.99 42.21 29.55 68.60 2.03 44.23 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.09 7.45 -2.39 -0.02 1.08 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.41 9.56 6.97 -92.71 -0.65 8.92 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.20 4.81 -2.39 -0.01 1.19 16 37 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.56 7.56 -2.39 -0.02 1.54 16 40 H 0.08 1.26 6.43 -2.39 -0.02 1.25 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 46 H 0.08 1.03 6.43 -2.39 -0.02 1.02 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 48 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 49 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 50 H 0.34 10.65 8.17 -89.69 -0.73 9.91 16 51 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 52 H 0.11 2.83 8.06 -2.39 -0.02 2.81 16 53 H 0.40 18.41 7.90 -92.71 -0.73 17.67 16 54 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -68.55 418.83 0.36 -68.19 By element: Atomic # 1 Polarization: 51.44 SS G_CDS: -1.21 Total: 50.23 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.01 Total: 9.11 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.37 Total: -118.56 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.10 Total: -53.20 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -68.55 0.36 -68.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567082351.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.050 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds