Wall clock time and date at job start Sat Apr 11 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.52998 * 109.47337 * 240.00000 * 2 1 3 5 5 C 1.50698 * 109.47643 * 119.99826 * 2 1 3 6 6 O 1.21290 * 119.99588 * 0.02562 * 5 2 1 7 7 N 1.34779 * 120.00528 * 180.02562 * 5 2 1 8 8 C 1.46501 * 120.00141 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.46954 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.46811 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00520 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99997 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00474 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.88801 * 322.57936 * 13 12 10 15 15 C 1.54914 * 111.00127 * 86.45568 * 13 12 10 16 16 N 1.47426 * 104.82992 * 81.07022 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.07997 * 119.99931 * 180.02562 * 17 16 15 19 19 C 1.38819 * 120.00094 * 0.03301 * 17 16 15 20 20 N 1.31618 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99883 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47088 * 60.00291 * 21 19 17 23 23 H 1.48494 * 109.47009 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47347 * 300.00261 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 C 1.53004 * 110.72125 * 96.24436 * 26 25 16 28 28 C 1.52995 * 110.72304 * 219.52316 * 26 25 16 29 29 H 1.08993 * 109.47304 * 299.99684 * 1 2 3 30 30 H 1.08992 * 109.47376 * 60.00177 * 1 2 3 31 31 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47704 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47476 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47168 * 60.00070 * 3 2 1 35 35 H 1.08999 * 109.47233 * 299.99792 * 4 2 1 36 36 H 1.09006 * 109.47080 * 59.99734 * 4 2 1 37 37 H 1.09004 * 109.47278 * 179.97438 * 4 2 1 38 38 H 0.96993 * 119.99512 * 359.97438 * 7 5 2 39 39 H 1.08999 * 109.47190 * 59.99781 * 8 7 5 40 40 H 1.09002 * 109.46607 * 299.99816 * 8 7 5 41 41 H 1.08999 * 109.47258 * 59.99936 * 9 8 7 42 42 H 1.09001 * 109.46959 * 299.99731 * 9 8 7 43 43 H 0.97004 * 119.99485 * 0.02562 * 12 10 9 44 44 H 1.08999 * 110.37121 * 322.22757 * 15 13 12 45 45 H 1.09003 * 110.36718 * 199.90661 * 15 13 12 46 46 H 0.96998 * 120.00119 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 48 48 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 49 49 H 1.08999 * 109.47052 * 61.45720 * 27 26 25 50 50 H 1.08993 * 109.46847 * 181.45696 * 27 26 25 51 51 H 1.09005 * 109.46970 * 301.45810 * 27 26 25 52 52 H 1.08999 * 109.47083 * 58.54334 * 28 26 25 53 53 H 1.09002 * 109.47293 * 178.54343 * 28 26 25 54 54 H 1.09000 * 109.47062 * 298.54438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 8 1.2442 -1.1717 2.0286 7 7 3.3575 -0.8330 1.4440 8 6 3.8459 -1.5241 2.6399 9 6 5.3759 -1.5239 2.6399 10 6 5.8782 -2.2342 3.8703 11 8 5.0902 -2.6956 4.6685 12 7 7.2033 -2.3577 4.0834 13 6 7.6917 -3.0477 5.2798 14 1 7.0591 -2.8291 6.1401 15 6 7.7919 -4.5746 5.0382 16 7 9.0676 -4.7605 4.3229 17 6 9.3778 -5.8143 3.5053 18 1 10.3443 -5.8590 3.0253 19 6 8.4501 -6.8249 3.2933 20 7 7.2721 -6.7701 3.8778 21 14 8.8737 -8.2627 2.1785 22 1 10.0615 -8.9732 2.7167 23 1 7.7221 -9.1982 2.1181 24 1 9.1741 -7.7595 0.8141 25 6 9.9517 -3.6276 4.6333 26 6 9.1733 -2.6772 5.5674 27 6 9.5244 -2.9495 7.0315 28 6 9.4494 -1.2165 5.2056 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 3.9877 -0.4644 0.8055 39 1 3.4830 -2.5519 2.6393 40 1 3.4821 -1.0108 3.5300 41 1 5.7391 -0.4962 2.6403 42 1 5.7392 -2.0374 1.7497 43 1 7.8336 -1.9890 3.4449 44 1 6.9592 -4.9170 4.4239 45 1 7.8084 -5.1088 5.9882 46 1 6.6237 -7.4761 3.7293 47 1 10.8509 -3.9857 5.1346 48 1 10.2219 -3.1059 3.7153 49 1 10.5880 -2.7706 7.1894 50 1 8.9452 -2.2859 7.6734 51 1 9.2902 -3.9859 7.2746 52 1 9.1626 -1.0385 4.1691 53 1 8.8706 -0.5644 5.8598 54 1 10.5116 -1.0059 5.3300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570899169.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:24 Heat of formation + Delta-G solvation = -93.003199 kcal Electronic energy + Delta-G solvation = -30812.713680 eV Core-core repulsion = 26783.437162 eV Total energy + Delta-G solvation = -4029.276518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38084 -41.02701 -39.47802 -36.66895 -36.29250 -35.66276 -34.48277 -32.60038 -31.98452 -29.73183 -28.18898 -28.15010 -27.95459 -27.39660 -25.90793 -24.72432 -23.21859 -22.23743 -21.31198 -20.51783 -19.89035 -18.69706 -18.15608 -17.76968 -17.34996 -17.03839 -16.77234 -16.49514 -16.02557 -15.64116 -15.38131 -15.20357 -14.97767 -14.85999 -14.64682 -14.55812 -14.23525 -13.94111 -13.68127 -13.63143 -13.29862 -13.10800 -13.04119 -13.01490 -12.97210 -12.87041 -12.79517 -12.61085 -12.60692 -12.54510 -12.46196 -12.16209 -11.89447 -11.83767 -11.77320 -11.73390 -11.41855 -11.33328 -10.96176 -10.76837 -10.65268 -10.18185 -9.90702 -8.84162 -7.74677 -5.20276 1.44017 1.47024 1.54049 1.61274 1.71968 1.94010 2.48926 2.53900 3.34348 3.55877 3.59164 3.68932 3.71041 3.86929 3.93896 3.98180 4.02173 4.07130 4.10063 4.28904 4.43154 4.49349 4.54399 4.71986 4.75021 4.77970 4.83606 4.84358 4.84774 4.89583 4.91099 4.94803 4.96612 4.97886 5.03332 5.06191 5.12390 5.22348 5.23140 5.33492 5.34558 5.35565 5.36903 5.38961 5.49432 5.55685 5.72771 5.85496 6.32239 6.52248 6.68263 7.09546 7.24299 7.39220 7.80354 8.43974 9.24944 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.002774 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.151629 B =10091.303776 C =11727.913156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.592 6.592 7 N -0.711 5.711 8 C 0.143 3.857 9 C -0.133 4.133 10 C 0.507 3.493 11 O -0.592 6.592 12 N -0.692 5.692 13 C 0.136 3.864 14 H 0.075 0.925 15 C 0.154 3.846 16 N -0.617 5.617 17 C -0.232 4.232 18 H 0.085 0.915 19 C -0.070 4.070 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.279 1.279 23 H -0.302 1.302 24 H -0.272 1.272 25 C 0.138 3.862 26 C -0.073 4.073 27 C -0.128 4.128 28 C -0.123 4.123 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.419 0.581 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.411 0.589 44 H 0.068 0.932 45 H -0.021 1.021 46 H 0.241 0.759 47 H 0.022 0.978 48 H 0.039 0.961 49 H 0.078 0.922 50 H 0.070 0.930 51 H 0.029 0.971 52 H 0.064 0.936 53 H 0.067 0.933 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 22.606 -9.810 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 C -0.194 4.194 4 C -0.197 4.197 5 C 0.298 3.702 6 O -0.472 6.472 7 N -0.364 5.364 8 C 0.018 3.982 9 C -0.173 4.173 10 C 0.295 3.705 11 O -0.473 6.473 12 N -0.343 5.343 13 C 0.030 3.970 14 H 0.093 0.907 15 C 0.028 3.972 16 N -0.343 5.343 17 C -0.361 4.361 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.805 3.195 22 H -0.205 1.205 23 H -0.229 1.229 24 H -0.197 1.197 25 C 0.013 3.987 26 C -0.074 4.074 27 C -0.186 4.186 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.257 0.743 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.137 0.863 43 H 0.248 0.752 44 H 0.086 0.914 45 H -0.004 1.004 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.089 0.911 51 H 0.049 0.951 52 H 0.083 0.917 53 H 0.086 0.914 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.700 21.774 -8.762 23.626 hybrid contribution 0.318 -1.699 -0.345 1.762 sum -2.381 20.076 -9.106 22.173 Atomic orbital electron populations 1.21688 0.92589 1.01797 1.02590 1.20874 0.97667 0.97696 0.92156 1.21890 1.02325 0.91665 1.03516 1.21910 1.02263 0.99781 0.95764 1.21464 0.82020 0.78794 0.87881 1.90705 1.56747 1.50571 1.49194 1.45802 1.07276 1.58183 1.25108 1.20719 0.93172 0.96430 0.87898 1.21711 0.94559 1.04575 0.96442 1.21026 0.82327 0.79354 0.87817 1.90720 1.56461 1.50853 1.49253 1.45678 1.06592 1.56948 1.25080 1.22158 0.94846 0.92602 0.87419 0.90745 1.21934 0.90574 0.91172 0.93535 1.44683 1.13259 1.22853 1.53523 1.19400 0.99280 0.98196 1.19185 0.89701 1.25635 0.96418 1.01679 1.02467 1.70126 1.07104 1.34212 1.48425 0.85174 0.76313 0.78928 0.79058 1.20529 1.22863 1.19735 1.21650 0.92781 0.88034 0.96211 1.21862 0.92116 0.97042 0.96377 1.21703 1.02492 1.00695 0.93668 1.21690 1.02840 0.91697 1.01868 0.93475 0.89160 0.94002 0.90304 0.89096 0.93062 0.93729 0.88947 0.90483 0.74291 0.94537 0.92566 0.83773 0.86325 0.75150 0.91369 1.00365 0.94941 0.95963 0.94261 0.90356 0.91117 0.95136 0.91670 0.91375 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.76 71.98 0.56 -1.67 16 2 C -0.08 -1.25 0.87 -52.93 -0.05 -1.29 16 3 C -0.14 -1.27 8.37 71.98 0.60 -0.67 16 4 C -0.14 -1.58 8.37 71.98 0.60 -0.98 16 5 C 0.51 12.60 6.48 87.66 0.57 13.17 16 6 O -0.59 -21.43 15.98 -3.06 -0.05 -21.48 16 7 N -0.71 -14.09 5.34 -463.04 -2.47 -16.57 16 8 C 0.14 3.88 4.96 86.38 0.43 4.31 16 9 C -0.13 -2.84 5.81 29.85 0.17 -2.66 16 10 C 0.51 17.06 7.83 87.66 0.69 17.75 16 11 O -0.59 -26.58 15.73 -3.03 -0.05 -26.63 16 12 N -0.69 -21.88 4.68 -435.56 -2.04 -23.92 16 13 C 0.14 5.15 2.57 46.47 0.12 5.27 16 14 H 0.07 2.98 7.63 -2.39 -0.02 2.96 16 15 C 0.15 7.89 5.27 86.86 0.46 8.35 16 16 N -0.62 -30.74 3.39 -691.97 -2.35 -33.09 16 17 C -0.23 -12.72 10.27 84.04 0.86 -11.86 16 18 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 20 N -0.95 -59.09 10.09 21.65 0.22 -58.87 16 21 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.14 5.15 6.40 86.73 0.56 5.70 16 26 C -0.07 -2.19 0.81 -50.91 -0.04 -2.23 16 27 C -0.13 -3.61 8.44 71.98 0.61 -3.00 16 28 C -0.12 -2.48 8.17 71.98 0.59 -1.89 16 29 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.88 8.10 -2.38 -0.02 0.86 16 32 H 0.08 0.46 7.56 -2.38 -0.02 0.44 16 33 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.08 0.63 7.57 -2.38 -0.02 0.61 16 38 H 0.42 4.60 7.31 -92.71 -0.68 3.92 16 39 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16 41 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.41 10.32 6.81 -92.71 -0.63 9.69 16 44 H 0.07 4.15 5.87 -2.39 -0.01 4.13 16 45 H -0.02 -1.23 7.73 -2.39 -0.02 -1.25 16 46 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.02 0.85 7.84 -2.39 -0.02 0.83 16 48 H 0.04 1.34 7.82 -2.39 -0.02 1.33 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.03 1.05 7.46 -2.38 -0.02 1.03 16 52 H 0.06 1.16 6.21 -2.39 -0.01 1.14 16 53 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -85.78 421.88 2.05 -83.73 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.43 Total: 23.81 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 7.19 Total: 24.77 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -6.64 Total: -132.45 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.10 Total: -48.11 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -85.78 2.05 -83.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570899169.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.269 kcal (2) G-P(sol) polarization free energy of solvation -85.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds