Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00143 * 2 1 4 4 H 1.48498 * 109.47376 * 239.99881 * 3 2 1 5 5 H 1.48501 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 120.00011 * 3 2 1 7 7 C 1.38814 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99921 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99988 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46905 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47297 * 180.02562 * 12 11 10 14 14 C 1.42897 * 114.00038 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.47004 * 179.97438 * 14 13 12 16 16 N 1.46495 * 109.47102 * 65.00083 * 15 14 13 17 17 C 1.34771 * 120.00035 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00123 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.13301 * 59.29506 * 19 17 16 21 21 C 1.54804 * 110.21045 * 297.55797 * 19 17 16 22 22 C 1.55324 * 104.99250 * 237.20065 * 21 19 17 23 23 C 1.53923 * 102.08591 * 337.80457 * 22 21 19 24 24 H 1.09000 * 110.99799 * 281.33100 * 23 22 21 25 25 C 1.52371 * 113.82533 * 155.32741 * 23 22 21 26 26 C 1.53633 * 107.59797 * 184.77481 * 25 23 22 27 27 C 1.52830 * 110.60712 * 56.40694 * 26 25 23 28 28 C 1.52329 * 110.76381 * 306.41511 * 27 26 25 29 29 N 1.45538 * 108.55899 * 56.68736 * 28 27 26 30 30 H 0.97001 * 119.99943 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99695 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47281 * 60.00150 * 10 9 7 33 33 H 1.08996 * 109.47127 * 299.99882 * 10 9 7 34 34 H 1.08991 * 109.47218 * 60.00316 * 11 10 9 35 35 H 1.08996 * 109.47248 * 299.99886 * 11 10 9 36 36 H 1.09001 * 109.47187 * 59.99421 * 12 11 10 37 37 H 1.09005 * 109.47589 * 300.00248 * 12 11 10 38 38 H 1.09002 * 109.47565 * 59.99773 * 14 13 12 39 39 H 1.09001 * 109.47454 * 299.99520 * 14 13 12 40 40 H 1.09001 * 109.46812 * 304.99440 * 15 14 13 41 41 H 1.09009 * 109.46695 * 184.99831 * 15 14 13 42 42 H 0.97005 * 119.99864 * 359.97438 * 16 15 14 43 43 H 1.09000 * 110.33534 * 356.08043 * 21 19 17 44 44 H 1.09003 * 110.33552 * 118.32113 * 21 19 17 45 45 H 1.08999 * 110.90688 * 219.60621 * 22 21 19 46 46 H 1.08998 * 110.90534 * 96.00169 * 22 21 19 47 47 H 1.08997 * 109.83239 * 304.30147 * 25 23 22 48 48 H 1.09006 * 109.83283 * 65.18984 * 25 23 22 49 49 H 1.08996 * 109.25038 * 176.69827 * 26 25 23 50 50 H 1.08995 * 109.25036 * 296.12471 * 26 25 23 51 51 H 1.09008 * 109.23958 * 66.43693 * 27 26 25 52 52 H 1.09008 * 109.24254 * 185.86631 * 27 26 25 53 53 H 1.09001 * 108.98933 * 297.14900 * 28 27 26 54 54 H 1.08997 * 109.89289 * 176.76225 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8287 -6.1447 0.0018 13 8 0.9002 -7.2308 0.0018 14 6 1.5147 -8.5209 0.0030 15 6 0.4317 -9.6017 0.0035 16 7 -0.3259 -9.5345 -1.2485 17 6 -1.3376 -10.3966 -1.4711 18 8 -1.6205 -11.2285 -0.6351 19 6 -2.1166 -10.3279 -2.7593 20 1 -1.4502 -10.4762 -3.6091 21 6 -2.8355 -8.9620 -2.8773 22 6 -4.3398 -9.3125 -3.0410 23 6 -4.2785 -10.7570 -3.5690 24 1 -4.0413 -10.7743 -4.6328 25 6 -5.5321 -11.5726 -3.2775 26 6 -5.2722 -13.0100 -3.7534 27 6 -4.0245 -13.5819 -3.0813 28 6 -2.8309 -12.6569 -3.2819 29 7 -3.1731 -11.3403 -2.7644 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.4368 -4.7621 -0.8885 35 1 0.4375 -4.7617 0.8914 36 1 2.4555 -6.2020 0.8918 37 1 2.4555 -6.2030 -0.8882 38 1 2.1343 -8.6275 0.8934 39 1 2.1354 -8.6286 -0.8865 40 1 -0.2420 -9.4405 0.8451 41 1 0.8978 -10.5830 0.0940 42 1 -0.0999 -8.8689 -1.9170 43 1 -2.6799 -8.3728 -1.9736 44 1 -2.4758 -8.4188 -3.7512 45 1 -4.8161 -8.6530 -3.7664 46 1 -4.8555 -9.2705 -2.0817 47 1 -5.7351 -11.5686 -2.2066 48 1 -6.3810 -11.1514 -3.8163 49 1 -6.1318 -13.6321 -3.5041 50 1 -5.1302 -13.0106 -4.8341 51 1 -4.2108 -13.6928 -2.0130 52 1 -3.8011 -14.5588 -3.5102 53 1 -2.6104 -12.5885 -4.3472 54 1 -1.9643 -13.0487 -2.7495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571352974.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -102.737655 kcal Electronic energy + Delta-G solvation = -29369.973857 eV Core-core repulsion = 25340.275222 eV Total energy + Delta-G solvation = -4029.698636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56885 -39.95066 -39.05319 -37.02844 -36.00319 -35.72619 -34.10328 -33.23161 -31.85680 -30.84078 -29.80473 -28.45751 -26.77295 -24.53771 -24.21992 -23.79272 -22.95874 -22.29357 -22.16775 -21.11180 -20.71252 -19.14363 -18.14367 -17.84015 -17.54104 -17.15162 -16.84336 -16.60243 -16.18448 -15.82671 -15.51179 -15.42883 -15.35881 -15.17688 -15.03381 -14.60552 -14.56146 -14.34750 -14.08114 -13.87220 -13.69270 -13.34551 -13.22624 -13.13958 -12.75650 -12.63061 -12.59049 -12.42688 -12.28989 -12.16919 -12.08703 -12.01088 -11.92669 -11.74623 -11.70498 -11.59706 -11.30695 -11.27938 -10.93115 -10.78583 -10.52594 -10.08244 -9.26066 -9.02187 -7.95623 -5.25757 1.48022 1.51690 1.57917 1.65276 2.08222 2.50719 2.66240 3.00147 3.37889 3.47737 3.60457 3.82639 3.88010 3.95389 4.00976 4.06653 4.08582 4.09506 4.19680 4.22171 4.29058 4.37351 4.37532 4.42745 4.47546 4.52079 4.60082 4.63234 4.71517 4.74101 4.77004 4.77863 4.82360 4.89005 4.91611 4.94647 4.99824 5.05289 5.11067 5.19150 5.26323 5.32398 5.33194 5.34400 5.44617 5.48828 5.49578 5.98539 6.21527 6.23694 6.28001 6.60366 7.29776 7.32126 8.07821 8.30547 9.27934 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.001684 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.478016 B =16623.704128 C =18022.438829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.154 3.846 11 C -0.113 4.113 12 C 0.078 3.922 13 O -0.406 6.406 14 C 0.051 3.949 15 C 0.126 3.874 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.569 6.569 19 C 0.065 3.935 20 H 0.090 0.910 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.070 3.930 24 H 0.067 0.933 25 C -0.105 4.105 26 C -0.116 4.116 27 C -0.113 4.113 28 C 0.067 3.933 29 N -0.538 5.538 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.413 0.587 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.049 0.951 52 H 0.079 0.921 53 H 0.043 0.957 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 -29.444 -10.897 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.151 4.151 12 C 0.001 3.999 13 O -0.326 6.326 14 C -0.025 4.025 15 C 0.002 3.998 16 N -0.371 5.371 17 C 0.302 3.698 18 O -0.447 6.447 19 C -0.047 4.047 20 H 0.108 0.892 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.037 4.037 24 H 0.085 0.915 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.061 4.061 29 N -0.263 5.263 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.249 0.751 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.098 0.902 53 H 0.061 0.939 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.154 -30.046 -9.779 32.014 hybrid contribution 0.667 1.344 -0.548 1.597 sum -4.486 -28.702 -10.326 30.831 Atomic orbital electron populations 1.69824 1.06745 1.26282 1.59264 1.25652 0.96462 1.01374 1.03479 0.85148 0.77155 0.78750 0.78308 1.20113 1.22144 1.20288 1.19654 0.91665 0.85311 1.41672 0.90324 1.42593 1.05715 1.01363 1.89587 1.20677 0.93858 0.84478 0.98176 1.21472 0.98590 0.92814 1.02260 1.22311 0.91203 0.84825 1.01543 1.87886 1.34603 1.14377 1.95706 1.22841 0.94750 0.81799 1.03106 1.21356 0.93484 0.98317 0.86662 1.45912 1.34027 1.36244 1.20967 1.20959 0.79621 0.80196 0.89014 1.90662 1.67796 1.38359 1.47848 1.21955 0.94004 0.94387 0.94331 0.89216 1.22664 0.95650 0.93629 1.03663 1.22395 0.95522 0.95504 1.01882 1.22661 0.91762 0.93698 0.95533 0.91468 1.21515 0.96322 0.95063 1.01402 1.21555 0.97577 0.95947 1.00270 1.21345 0.94498 0.98271 1.00940 1.21650 0.98392 0.88771 0.97256 1.62185 1.08177 1.01909 1.54077 0.93924 0.79530 0.95782 0.95351 0.91917 0.92653 0.92131 0.91424 0.90097 0.90516 0.92794 0.89297 0.75120 0.91640 0.87972 0.88664 0.91939 0.92632 0.89824 0.91089 0.91263 0.93197 0.90213 0.93939 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -38.77 5.60 -343.45 -1.92 -40.69 16 10 C 0.15 6.03 6.26 86.38 0.54 6.57 16 11 C -0.11 -3.62 5.70 30.60 0.17 -3.44 16 12 C 0.08 1.81 5.94 71.98 0.43 2.24 16 13 O -0.41 -9.32 10.29 -148.98 -1.53 -10.85 16 14 C 0.05 0.81 6.07 71.98 0.44 1.24 16 15 C 0.13 2.32 6.06 86.38 0.52 2.84 16 16 N -0.72 -13.34 5.45 -463.05 -2.52 -15.86 16 17 C 0.52 11.90 7.00 87.66 0.61 12.52 16 18 O -0.57 -18.10 16.47 -3.03 -0.05 -18.15 16 19 C 0.07 1.15 3.01 44.89 0.14 1.28 16 20 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 21 C -0.12 -1.79 6.58 32.01 0.21 -1.58 16 22 C -0.12 -1.69 6.63 31.70 0.21 -1.48 16 23 C 0.07 1.02 2.61 44.68 0.12 1.14 16 24 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 25 C -0.11 -1.42 5.71 30.60 0.17 -1.25 16 26 C -0.12 -1.37 5.94 30.75 0.18 -1.18 16 27 C -0.11 -1.66 6.02 30.32 0.18 -1.48 16 28 C 0.07 1.13 5.76 86.34 0.50 1.63 16 29 N -0.54 -10.27 3.81 -847.93 -3.23 -13.51 16 30 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 31 H 0.37 20.63 7.67 -92.70 -0.71 19.92 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.41 6.07 8.47 -92.70 -0.79 5.28 16 43 H 0.06 1.22 7.71 -2.39 -0.02 1.20 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 53 H 0.04 0.58 8.05 -2.39 -0.02 0.56 16 54 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.09 427.29 -1.85 -75.95 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.63 Total: 33.13 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.73 Total: 1.72 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -7.40 Total: -129.79 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.58 Total: -29.00 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.09 -1.85 -75.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571352974.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.791 kcal (2) G-P(sol) polarization free energy of solvation -74.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds