Wall clock time and date at job start Sat Apr 11 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 110.99962 * 2 1 4 4 C 1.53004 * 109.47126 * 66.04555 * 3 2 1 5 5 C 1.53003 * 109.46935 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47233 * 179.97438 * 5 4 3 7 7 C 1.38577 * 111.00281 * 236.04052 * 2 1 3 8 8 N 1.31216 * 126.46995 * 123.92876 * 7 2 1 9 9 N 1.28534 * 109.86207 * 180.02562 * 8 7 2 10 10 C 1.30302 * 110.04959 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.34511 * 179.97438 * 10 9 8 12 12 C 1.53115 * 109.52362 * 59.70082 * 11 10 9 13 13 C 1.53041 * 109.27568 * 182.44101 * 12 11 10 14 14 N 1.46849 * 109.52390 * 59.17984 * 13 12 11 15 15 C 1.46897 * 111.00162 * 174.16059 * 14 13 12 16 16 C 1.50703 * 109.46944 * 294.20867 * 15 14 13 17 17 H 1.07996 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99757 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47228 * 89.99965 * 20 18 16 22 22 H 1.48502 * 109.47113 * 210.00092 * 20 18 16 23 23 H 1.48496 * 109.47240 * 329.99837 * 20 18 16 24 24 C 1.46845 * 111.19860 * 298.25965 * 14 13 12 25 25 C 1.53043 * 109.52649 * 61.74085 * 24 14 13 26 26 N 1.36447 * 126.47586 * 303.97846 * 7 2 1 27 27 C 1.46509 * 127.13426 * 359.97438 * 26 7 2 28 28 H 1.09005 * 109.47428 * 183.95456 * 1 2 3 29 29 H 1.08994 * 109.47486 * 303.95442 * 1 2 3 30 30 H 1.09000 * 109.47037 * 63.96005 * 1 2 3 31 31 H 1.09004 * 109.46973 * 186.04229 * 3 2 1 32 32 H 1.09000 * 109.47206 * 306.03852 * 3 2 1 33 33 H 1.08997 * 109.46869 * 299.99273 * 4 3 2 34 34 H 1.08995 * 109.47051 * 59.99930 * 4 3 2 35 35 H 1.09004 * 109.46947 * 299.99541 * 5 4 3 36 36 H 1.09000 * 109.47424 * 59.99280 * 5 4 3 37 37 H 1.09000 * 109.52169 * 179.89732 * 11 10 9 38 38 H 1.09001 * 109.50629 * 302.37846 * 12 11 10 39 39 H 1.08998 * 109.50692 * 62.50512 * 12 11 10 40 40 H 1.09000 * 109.46098 * 299.16655 * 13 12 11 41 41 H 1.08999 * 109.45529 * 179.18957 * 13 12 11 42 42 H 1.08996 * 109.47360 * 54.21046 * 15 14 13 43 43 H 1.09000 * 109.46925 * 174.21146 * 15 14 13 44 44 H 0.97004 * 120.00029 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46042 * 301.72417 * 24 14 13 46 46 H 1.09001 * 109.45574 * 181.75301 * 24 14 13 47 47 H 1.08993 * 109.50552 * 180.88208 * 25 24 14 48 48 H 1.09000 * 109.53554 * 60.78033 * 25 24 14 49 49 H 1.08996 * 109.47092 * 90.02972 * 27 26 7 50 50 H 1.09002 * 109.46899 * 210.02751 * 27 26 7 51 51 H 1.08996 * 109.47048 * 330.02113 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1791 3.4860 1.3180 6 9 1.8458 4.1135 2.5231 7 6 1.9657 -0.7227 -1.0730 8 7 2.7950 -0.2853 -1.9910 9 7 3.0446 -1.2214 -2.8357 10 6 2.3942 -2.3024 -2.5098 11 6 2.4200 -3.6167 -3.2467 12 6 3.8542 -4.1512 -3.2895 13 6 3.8839 -5.4545 -4.0911 14 7 3.3947 -5.2044 -5.4530 15 6 3.5387 -6.4014 -6.2922 16 6 5.0018 -6.7090 -6.4818 17 1 5.7498 -6.0786 -6.0242 18 6 5.3853 -7.7952 -7.2394 19 7 4.4743 -8.5625 -7.7971 20 14 7.1988 -8.1769 -7.4738 21 1 7.6576 -9.0840 -6.3914 22 1 7.4000 -8.8350 -8.7898 23 1 7.9803 -6.9151 -7.4268 24 6 2.0033 -4.7352 -5.4396 25 6 1.9175 -3.4104 -4.6783 26 7 1.6839 -2.0231 -1.3752 27 6 0.8028 -2.9317 -0.6372 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3634 0.5739 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 0.5471 2.0845 1.4264 34 1 2.0657 1.5015 2.1492 35 1 3.2635 3.4594 1.2096 36 1 1.7446 4.0417 0.4870 37 1 1.7781 -4.3338 -2.7351 38 1 4.5026 -3.4160 -3.7663 39 1 4.2026 -4.3405 -2.2742 40 1 3.2461 -6.1937 -3.6062 41 1 4.9061 -5.8302 -4.1357 42 1 3.0497 -7.2462 -5.8072 43 1 3.0763 -6.2222 -7.2629 44 1 4.7441 -9.3270 -8.3298 45 1 1.3744 -5.4778 -4.9484 46 1 1.6598 -4.5886 -6.4636 47 1 0.8822 -3.0704 -4.6551 48 1 2.5349 -2.6630 -5.1766 49 1 -0.2114 -2.8517 -1.0284 50 1 1.1573 -3.9559 -0.7536 51 1 0.8071 -2.6636 0.4192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650269935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:18 Heat of formation + Delta-G solvation = 34.300763 kcal Electronic energy + Delta-G solvation = -29680.934515 eV Core-core repulsion = 25566.010757 eV Total energy + Delta-G solvation = -4114.923758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.213 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.03312 -43.13712 -38.71971 -38.14533 -35.28297 -34.16224 -33.07880 -32.13485 -30.41278 -29.58769 -28.17131 -27.34366 -26.73015 -25.12050 -24.26607 -22.64434 -22.34195 -21.59498 -21.03783 -20.46087 -19.06332 -17.55384 -17.02631 -16.71268 -16.52426 -16.25392 -16.13349 -15.54062 -15.43465 -15.11237 -14.79719 -14.34334 -14.23152 -14.11262 -13.92361 -13.70967 -13.54774 -13.37168 -13.06300 -12.73618 -12.56637 -12.19326 -12.02206 -11.89726 -11.81851 -11.65397 -11.52878 -11.34015 -11.11177 -10.95775 -10.83406 -10.73240 -10.65368 -10.42001 -10.34891 -10.25860 -10.23551 -9.85761 -9.71527 -9.15276 -8.42522 -8.41833 -7.21569 -6.01607 -4.02619 1.60917 1.97939 2.77057 3.21320 3.33188 3.39671 3.44945 4.10722 4.18882 4.27535 4.29390 4.33787 4.43987 4.50422 4.61813 4.66948 4.67507 4.73228 4.82992 4.94882 4.95648 5.04512 5.09654 5.14660 5.19000 5.22494 5.30882 5.34253 5.40076 5.54380 5.66736 5.67428 5.77819 5.83867 5.93480 5.99828 6.12688 6.15321 6.21558 6.33959 6.42014 6.53892 6.70644 6.75460 6.91917 7.31366 7.35042 7.82367 8.10996 8.21873 8.56859 8.72319 9.05456 9.61769 11.09207 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.001888 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.184258 B =14827.635308 C =15362.218894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.452 5.452 3 C 0.073 3.927 4 C -0.152 4.152 5 C 0.063 3.937 6 F -0.218 7.218 7 C 0.344 3.656 8 N -0.320 5.320 9 N -0.273 5.273 10 C 0.199 3.801 11 C 0.004 3.996 12 C -0.104 4.104 13 C 0.067 3.933 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.506 4.506 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.058 3.942 25 C -0.100 4.100 26 N -0.484 5.484 27 C 0.073 3.927 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.089 0.911 42 H -0.010 1.010 43 H 0.031 0.969 44 H 0.261 0.739 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 17.675 19.920 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.175 5.175 3 C -0.055 4.055 4 C -0.190 4.190 5 C 0.008 3.992 6 F -0.199 7.199 7 C -0.013 4.013 8 N -0.165 5.165 9 N -0.111 5.111 10 C -0.069 4.069 11 C -0.017 4.017 12 C -0.143 4.143 13 C -0.061 4.061 14 N -0.260 5.260 15 C 0.068 3.932 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.071 4.071 25 C -0.139 4.139 26 N -0.179 5.179 27 C -0.070 4.070 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.107 0.893 42 H 0.008 0.992 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.113 0.887 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.918 18.622 19.321 28.970 hybrid contribution -0.841 -1.577 0.471 1.848 sum -11.759 17.045 19.792 28.645 Atomic orbital electron populations 1.22732 0.84525 1.03681 1.02535 1.58595 1.08980 1.15168 1.34751 1.21943 1.02339 0.84505 0.96668 1.22217 1.02628 0.95293 0.98896 1.21886 1.01693 0.92377 0.83250 1.92775 1.94428 1.83948 1.48774 1.22510 1.00463 0.83910 0.94387 1.74611 1.17443 1.22922 1.01551 1.74022 1.20280 0.96830 1.19931 1.25028 0.94803 0.99635 0.87424 1.19778 0.99939 0.86928 0.95089 1.21678 0.93819 0.99055 0.99720 1.21930 1.01864 0.93548 0.88768 1.62021 1.16864 1.36775 1.10340 1.19713 0.97442 0.84301 0.91731 1.21180 0.91850 1.10510 1.30956 0.91751 1.24988 0.97719 0.96197 0.95742 1.69960 1.32902 1.17016 1.34045 0.86510 0.85182 0.78477 0.77347 1.20807 1.21303 1.19696 1.21992 0.91152 0.94258 0.99706 1.21602 1.00142 0.99384 0.92779 1.46079 1.38062 1.10417 1.23389 1.22140 0.93477 0.94125 0.97263 0.90566 0.89137 0.93901 0.88467 0.92463 0.90497 0.89582 0.90216 0.90525 0.90377 0.89825 0.92446 0.96343 0.89303 0.99204 0.95103 0.92982 0.96157 0.90895 0.92585 0.89800 0.90297 0.88742 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.16 60.06 0.55 0.62 16 2 N -0.45 -3.89 4.81 -182.39 -0.88 -4.77 16 3 C 0.07 0.54 4.44 -3.82 -0.02 0.52 16 4 C -0.15 -0.81 5.60 -26.73 -0.15 -0.96 16 5 C 0.06 0.33 7.55 37.16 0.28 0.61 16 6 F -0.22 -1.77 17.36 2.25 0.04 -1.73 16 7 C 0.34 4.13 7.20 -318.89 -2.30 1.84 16 8 N -0.32 -4.89 11.16 30.31 0.34 -4.55 16 9 N -0.27 -4.52 12.18 32.99 0.40 -4.12 16 10 C 0.20 2.77 6.58 -154.01 -1.01 1.75 16 11 C 0.00 0.05 2.62 -91.65 -0.24 -0.19 16 12 C -0.10 -1.62 5.36 -26.65 -0.14 -1.76 16 13 C 0.07 1.26 5.30 -3.83 -0.02 1.24 16 14 N -0.53 -11.27 4.65 -236.11 -1.10 -12.37 16 15 C 0.19 4.95 4.72 -4.98 -0.02 4.93 16 16 C -0.51 -14.09 8.43 -34.44 -0.29 -14.38 16 17 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.06 1.00 5.46 -3.83 -0.02 0.98 16 25 C -0.10 -1.47 5.36 -26.64 -0.14 -1.61 16 26 N -0.48 -5.41 3.21 -121.45 -0.39 -5.80 16 27 C 0.07 0.48 9.20 59.85 0.55 1.03 16 28 H 0.08 0.37 5.41 -51.93 -0.28 0.09 16 29 H 0.09 0.35 6.30 -51.93 -0.33 0.02 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.08 0.35 6.47 -51.93 -0.34 0.01 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.91 6.95 -51.93 -0.36 0.55 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 1.83 6.70 -51.93 -0.35 1.48 16 42 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 43 H 0.03 0.85 7.99 -51.93 -0.41 0.43 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 50 H 0.09 0.56 7.23 -51.93 -0.38 0.19 16 51 H 0.09 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -33.70 401.26 -11.54 -45.24 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -8.64 Total: -4.80 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.07 Total: -3.93 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.89 Total: -57.43 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.70 -11.54 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650269935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.538 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds