Wall clock time and date at job start Sat Apr 11 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 110.99962 * 2 1 4 4 C 1.53004 * 109.47126 * 66.04555 * 3 2 1 5 5 C 1.53003 * 109.46935 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47233 * 179.97438 * 5 4 3 7 7 C 1.38577 * 111.00281 * 236.04052 * 2 1 3 8 8 N 1.31216 * 126.46995 * 123.92876 * 7 2 1 9 9 N 1.28534 * 109.86207 * 180.02562 * 8 7 2 10 10 C 1.30302 * 110.04959 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.34511 * 179.97438 * 10 9 8 12 12 C 1.53115 * 109.52362 * 59.70082 * 11 10 9 13 13 C 1.53041 * 109.27568 * 182.44101 * 12 11 10 14 14 N 1.46849 * 109.52390 * 59.17984 * 13 12 11 15 15 C 1.46897 * 111.00162 * 174.16059 * 14 13 12 16 16 C 1.50703 * 109.46944 * 294.20867 * 15 14 13 17 17 H 1.07996 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99757 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47228 * 89.99965 * 20 18 16 22 22 H 1.48502 * 109.47113 * 210.00092 * 20 18 16 23 23 H 1.48496 * 109.47240 * 329.99837 * 20 18 16 24 24 C 1.46845 * 111.19860 * 298.25965 * 14 13 12 25 25 C 1.53043 * 109.52649 * 61.74085 * 24 14 13 26 26 N 1.36447 * 126.47586 * 303.97846 * 7 2 1 27 27 C 1.46509 * 127.13426 * 359.97438 * 26 7 2 28 28 H 1.09005 * 109.47428 * 183.95456 * 1 2 3 29 29 H 1.08994 * 109.47486 * 303.95442 * 1 2 3 30 30 H 1.09000 * 109.47037 * 63.96005 * 1 2 3 31 31 H 1.09004 * 109.46973 * 186.04229 * 3 2 1 32 32 H 1.09000 * 109.47206 * 306.03852 * 3 2 1 33 33 H 1.08997 * 109.46869 * 299.99273 * 4 3 2 34 34 H 1.08995 * 109.47051 * 59.99930 * 4 3 2 35 35 H 1.09004 * 109.46947 * 299.99541 * 5 4 3 36 36 H 1.09000 * 109.47424 * 59.99280 * 5 4 3 37 37 H 1.09000 * 109.52169 * 179.89732 * 11 10 9 38 38 H 1.09001 * 109.50629 * 302.37846 * 12 11 10 39 39 H 1.08998 * 109.50692 * 62.50512 * 12 11 10 40 40 H 1.09000 * 109.46098 * 299.16655 * 13 12 11 41 41 H 1.08999 * 109.45529 * 179.18957 * 13 12 11 42 42 H 1.08996 * 109.47360 * 54.21046 * 15 14 13 43 43 H 1.09000 * 109.46925 * 174.21146 * 15 14 13 44 44 H 0.97004 * 120.00029 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46042 * 301.72417 * 24 14 13 46 46 H 1.09001 * 109.45574 * 181.75301 * 24 14 13 47 47 H 1.08993 * 109.50552 * 180.88208 * 25 24 14 48 48 H 1.09000 * 109.53554 * 60.78033 * 25 24 14 49 49 H 1.08996 * 109.47092 * 90.02972 * 27 26 7 50 50 H 1.09002 * 109.46899 * 210.02751 * 27 26 7 51 51 H 1.08996 * 109.47048 * 330.02113 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1791 3.4860 1.3180 6 9 1.8458 4.1135 2.5231 7 6 1.9657 -0.7227 -1.0730 8 7 2.7950 -0.2853 -1.9910 9 7 3.0446 -1.2214 -2.8357 10 6 2.3942 -2.3024 -2.5098 11 6 2.4200 -3.6167 -3.2467 12 6 3.8542 -4.1512 -3.2895 13 6 3.8839 -5.4545 -4.0911 14 7 3.3947 -5.2044 -5.4530 15 6 3.5387 -6.4014 -6.2922 16 6 5.0018 -6.7090 -6.4818 17 1 5.7498 -6.0786 -6.0242 18 6 5.3853 -7.7952 -7.2394 19 7 4.4743 -8.5625 -7.7971 20 14 7.1988 -8.1769 -7.4738 21 1 7.6576 -9.0840 -6.3914 22 1 7.4000 -8.8350 -8.7898 23 1 7.9803 -6.9151 -7.4268 24 6 2.0033 -4.7352 -5.4396 25 6 1.9175 -3.4104 -4.6783 26 7 1.6839 -2.0231 -1.3752 27 6 0.8028 -2.9317 -0.6372 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3634 0.5739 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3443 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 0.5471 2.0845 1.4264 34 1 2.0657 1.5015 2.1492 35 1 3.2635 3.4594 1.2096 36 1 1.7446 4.0417 0.4870 37 1 1.7781 -4.3338 -2.7351 38 1 4.5026 -3.4160 -3.7663 39 1 4.2026 -4.3405 -2.2742 40 1 3.2461 -6.1937 -3.6062 41 1 4.9061 -5.8302 -4.1357 42 1 3.0497 -7.2462 -5.8072 43 1 3.0763 -6.2222 -7.2629 44 1 4.7441 -9.3270 -8.3298 45 1 1.3744 -5.4778 -4.9484 46 1 1.6598 -4.5886 -6.4636 47 1 0.8822 -3.0704 -4.6551 48 1 2.5349 -2.6630 -5.1766 49 1 -0.2114 -2.8517 -1.0284 50 1 1.1573 -3.9559 -0.7536 51 1 0.8071 -2.6636 0.4192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650269935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:17 Heat of formation + Delta-G solvation = 14.359564 kcal Electronic energy + Delta-G solvation = -29681.799230 eV Core-core repulsion = 25566.010757 eV Total energy + Delta-G solvation = -4115.788473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.213 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.56581 -44.07948 -39.93382 -39.03845 -36.20368 -35.64786 -34.25718 -33.47726 -31.79711 -30.68167 -29.11726 -28.44488 -27.72031 -25.95851 -25.59770 -24.03052 -23.53547 -22.72896 -21.83222 -21.63509 -20.30034 -18.44127 -18.30306 -17.67935 -17.38299 -17.18842 -17.04331 -16.74305 -16.24938 -16.02468 -15.82334 -15.77349 -15.43657 -15.14761 -14.99109 -14.63632 -14.43112 -14.30576 -14.10654 -13.97933 -13.82905 -13.41467 -13.13264 -13.04321 -12.79124 -12.62552 -12.57763 -12.53773 -12.41811 -12.16829 -12.06422 -12.02267 -11.98233 -11.71738 -11.57412 -11.46734 -11.34398 -11.15302 -11.13157 -10.76675 -10.58906 -9.31955 -8.93348 -8.18488 -6.27680 0.72223 1.17830 1.41708 1.43234 1.54971 1.77303 2.41883 2.52965 3.13634 3.21308 3.33792 3.57955 3.65498 3.72038 3.80907 3.87111 3.87214 4.05284 4.08671 4.17704 4.25991 4.28742 4.31006 4.31956 4.43660 4.45344 4.53043 4.55385 4.58289 4.62715 4.70981 4.72808 4.82546 4.84121 4.86742 4.92940 5.00200 5.01365 5.14192 5.18664 5.21289 5.24200 5.35888 5.41162 5.51700 5.59921 5.68635 6.09402 6.12040 6.40179 6.71227 6.88985 7.41873 7.73945 8.92192 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.001888 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.184258 B =14827.635308 C =15362.218894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.450 5.450 3 C 0.075 3.925 4 C -0.139 4.139 5 C 0.059 3.941 6 F -0.233 7.233 7 C 0.354 3.646 8 N -0.361 5.361 9 N -0.316 5.316 10 C 0.195 3.805 11 C 0.013 3.987 12 C -0.091 4.091 13 C 0.071 3.929 14 N -0.549 5.549 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.058 3.942 25 C -0.088 4.088 26 N -0.479 5.479 27 C 0.061 3.939 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.063 0.937 42 H -0.033 1.033 43 H 0.004 0.996 44 H 0.264 0.736 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 18.077 22.173 31.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.173 5.173 3 C -0.052 4.052 4 C -0.177 4.177 5 C 0.004 3.996 6 F -0.215 7.215 7 C -0.003 4.003 8 N -0.206 5.206 9 N -0.154 5.154 10 C -0.074 4.074 11 C -0.008 4.008 12 C -0.130 4.130 13 C -0.058 4.058 14 N -0.274 5.274 15 C 0.082 3.918 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.071 4.071 25 C -0.127 4.127 26 N -0.174 5.174 27 C -0.080 4.080 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.082 0.918 42 H -0.015 1.015 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.173 19.038 21.607 31.265 hybrid contribution -0.532 -1.655 -0.159 1.746 sum -12.705 17.382 21.449 30.391 Atomic orbital electron populations 1.22895 0.82334 1.05125 1.03300 1.58761 1.10677 1.15303 1.32599 1.21920 1.01279 0.84217 0.97807 1.22088 1.03388 0.94882 0.97321 1.22029 1.02319 0.92413 0.82863 1.92743 1.94578 1.84261 1.49898 1.22858 0.99064 0.84455 0.93920 1.74508 1.19663 1.23527 1.02881 1.73924 1.21918 0.98069 1.21465 1.24790 0.95297 0.98923 0.88432 1.19647 0.98780 0.87623 0.94702 1.21499 0.95216 0.96557 0.99743 1.21882 1.00409 0.95527 0.87937 1.61913 1.19714 1.34393 1.11398 1.19351 0.95979 0.85314 0.91158 1.21478 0.92897 1.10677 1.31006 0.92150 1.25861 1.02368 0.95980 0.95319 1.70076 1.35073 1.17531 1.34677 0.85433 0.79548 0.78388 0.77562 1.19693 1.20768 1.19298 1.22053 0.89042 0.95821 1.00144 1.21460 1.01407 0.96877 0.92953 1.46223 1.37905 1.10560 1.22688 1.22560 0.93771 0.93751 0.97885 0.89123 0.86767 0.94481 0.90302 0.92605 0.89136 0.89918 0.89640 0.89092 0.87359 0.92220 0.90462 0.95403 0.91838 1.01501 0.97785 0.92739 0.94840 0.91650 0.89855 0.92097 0.88002 0.87708 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.16 127.69 1.17 1.25 16 2 N -0.45 -6.75 4.81 -730.94 -3.51 -10.27 16 3 C 0.07 1.01 4.44 86.31 0.38 1.39 16 4 C -0.14 -1.19 5.60 30.60 0.17 -1.02 16 5 C 0.06 0.53 7.55 71.98 0.54 1.07 16 6 F -0.23 -3.48 17.36 44.97 0.78 -2.70 16 7 C 0.35 7.97 7.20 260.12 1.87 9.84 16 8 N -0.36 -10.96 11.16 -58.01 -0.65 -11.61 16 9 N -0.32 -10.47 12.18 -49.53 -0.60 -11.08 16 10 C 0.19 5.14 6.58 137.64 0.91 6.04 16 11 C 0.01 0.34 2.62 -11.46 -0.03 0.31 16 12 C -0.09 -2.78 5.36 30.65 0.16 -2.62 16 13 C 0.07 2.65 5.30 86.33 0.46 3.11 16 14 N -0.55 -23.63 4.65 -900.91 -4.19 -27.82 16 15 C 0.21 11.07 4.72 85.56 0.40 11.48 16 16 C -0.52 -29.83 8.43 25.60 0.22 -29.61 16 17 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 20 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.06 1.98 5.46 86.33 0.47 2.45 16 25 C -0.09 -2.49 5.36 30.65 0.16 -2.32 16 26 N -0.48 -9.51 3.21 -538.17 -1.73 -11.24 16 27 C 0.06 0.56 9.20 127.77 1.18 1.74 16 28 H 0.09 0.51 5.41 -2.38 -0.01 0.50 16 29 H 0.11 0.44 6.30 -2.39 -0.02 0.42 16 30 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 1.37 7.75 -2.39 -0.02 1.35 16 32 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.09 0.55 6.47 -2.39 -0.02 0.53 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.11 2.12 6.95 -2.39 -0.02 2.10 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 2.68 6.70 -2.39 -0.02 2.66 16 42 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 43 H 0.00 0.23 7.99 -2.39 -0.02 0.21 16 44 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 2.31 8.02 -2.39 -0.02 2.30 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.10 0.52 7.85 -2.39 -0.02 0.50 16 50 H 0.10 0.80 7.23 -2.39 -0.02 0.78 16 51 H 0.11 0.67 7.57 -2.39 -0.02 0.65 16 Total: -1.00 -75.93 401.26 1.86 -74.07 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.91 Total: 5.92 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 8.53 Total: 3.72 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -10.39 Total: -127.81 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.93 1.86 -74.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650269935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.431 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds