Wall clock time and date at job start Sat Apr 11 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99864 * 2 1 4 4 C 1.52993 * 109.47003 * 66.04444 * 3 2 1 5 5 C 1.53008 * 109.46733 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46913 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00188 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99511 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00249 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.46866 * 300.00184 * 9 7 6 11 11 C 1.52997 * 109.47078 * 60.00007 * 9 7 6 12 12 C 1.52996 * 109.47131 * 60.00341 * 11 9 7 13 13 C 1.53000 * 109.47518 * 59.99828 * 12 11 9 14 14 C 1.53005 * 109.46632 * 300.00318 * 13 12 11 15 15 C 1.52996 * 109.47245 * 59.99973 * 14 13 12 16 16 C 1.46904 * 111.00091 * 236.04370 * 2 1 3 17 17 C 1.50699 * 109.47221 * 293.95453 * 16 2 1 18 18 O 1.21287 * 120.00070 * 0.02562 * 17 16 2 19 19 N 1.34771 * 119.99928 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99986 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99849 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46918 * 60.00322 * 24 22 20 26 26 H 1.48500 * 109.47149 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46773 * 300.00363 * 24 22 20 28 28 H 1.09001 * 109.46725 * 60.00491 * 1 2 3 29 29 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47114 * 300.00094 * 1 2 3 31 31 H 1.09000 * 109.47162 * 306.04335 * 3 2 1 32 32 H 1.09002 * 109.46776 * 186.04895 * 3 2 1 33 33 H 1.09004 * 109.46998 * 60.00399 * 4 3 2 34 34 H 1.08992 * 109.47715 * 299.99868 * 4 3 2 35 35 H 1.09000 * 109.47188 * 60.00041 * 5 4 3 36 36 H 1.09002 * 109.47288 * 299.99955 * 5 4 3 37 37 H 0.96998 * 119.99994 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 10 9 7 40 40 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 41 41 H 1.09001 * 109.47289 * 180.02562 * 11 9 7 42 42 H 1.09004 * 109.47261 * 300.00035 * 11 9 7 43 43 H 1.09001 * 109.46997 * 299.99574 * 12 11 9 44 44 H 1.08996 * 109.47134 * 180.02562 * 12 11 9 45 45 H 1.08992 * 109.47132 * 180.02562 * 13 12 11 46 46 H 1.08992 * 109.46645 * 59.99985 * 13 12 11 47 47 H 1.09001 * 109.46962 * 299.99689 * 14 13 12 48 48 H 1.08996 * 109.46524 * 179.97438 * 14 13 12 49 49 H 1.09000 * 109.46870 * 179.97438 * 15 14 13 50 50 H 1.09001 * 109.47372 * 59.99967 * 15 14 13 51 51 H 1.08999 * 109.46953 * 53.95618 * 16 2 1 52 52 H 1.08999 * 109.47056 * 173.95014 * 16 2 1 53 53 H 0.96999 * 119.99986 * 359.97438 * 19 17 16 54 54 H 0.97003 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1803 3.4856 1.3184 6 7 1.8323 4.1423 2.5809 7 6 2.2147 5.4149 2.8064 8 8 2.8474 6.0161 1.9644 9 6 1.8572 6.0902 4.1053 10 6 0.3353 6.1290 4.2579 11 6 2.4668 5.3089 5.2710 12 6 3.9887 5.2701 5.1185 13 6 4.5380 6.6981 5.1189 14 6 3.9282 7.4793 3.9532 15 6 2.4064 7.5182 4.1058 16 6 1.9955 -0.7660 -1.1376 17 6 1.6370 -2.2205 -0.9728 18 8 1.0047 -2.5832 -0.0034 19 7 2.0181 -3.1180 -1.9032 20 6 1.6924 -4.4413 -1.7530 21 1 1.1302 -4.7643 -0.8895 22 6 2.0849 -5.3665 -2.7125 23 7 2.7686 -4.9733 -3.7636 24 14 1.6405 -7.1694 -2.5083 25 1 0.1633 -7.3121 -2.4553 26 1 2.1722 -7.9436 -3.6585 27 1 2.2332 -7.6856 -1.2483 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 1.7463 4.0418 0.4874 36 1 3.2646 3.4582 1.2104 37 1 1.3272 3.6610 3.2548 38 1 -0.0560 5.1116 4.2576 39 1 0.0767 6.6171 5.1976 40 1 -0.0990 6.6856 3.4274 41 1 2.2079 5.7971 6.2106 42 1 2.0755 4.2915 5.2707 43 1 4.2473 4.7816 4.1790 44 1 4.4229 4.7131 5.9486 45 1 5.6221 6.6704 5.0098 46 1 4.2794 7.1864 6.0583 47 1 4.1869 6.9908 3.0137 48 1 4.3192 8.4967 3.9538 49 1 1.9721 8.0751 3.2755 50 1 2.1478 8.0067 5.0453 51 1 1.5612 -0.3873 -2.0628 52 1 3.0798 -0.6611 -1.1756 53 1 2.5228 -2.8278 -2.6790 54 1 3.0429 -5.6193 -4.4332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660290730.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:27 Heat of formation + Delta-G solvation = -117.934744 kcal Electronic energy + Delta-G solvation = -29644.413557 eV Core-core repulsion = 25614.055927 eV Total energy + Delta-G solvation = -4030.357631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74663 -40.38212 -38.62791 -38.01259 -36.27226 -35.78814 -34.00093 -33.27360 -32.41364 -31.46376 -29.35460 -27.64383 -27.35408 -26.59042 -24.55194 -23.63846 -23.08054 -22.03103 -21.58762 -20.96531 -20.15822 -19.83493 -17.85459 -17.49054 -17.14031 -16.92425 -16.58288 -16.55798 -16.12048 -16.03476 -15.68407 -15.39732 -15.16572 -15.02518 -14.98391 -14.66983 -14.52965 -14.19131 -13.74160 -13.47330 -13.43277 -13.15568 -13.10298 -13.01672 -12.96571 -12.80210 -12.73675 -12.69650 -12.50938 -12.43467 -12.39906 -12.30822 -12.11927 -11.93841 -11.68764 -11.54468 -11.43985 -11.04232 -10.93869 -10.46126 -10.26280 -10.01951 -9.98941 -9.19760 -8.45234 -5.93951 1.40408 1.42045 1.53023 1.69844 2.06964 2.17397 2.30582 2.82149 3.21568 3.43689 3.59774 3.67237 3.80067 3.96414 3.99375 4.10315 4.13731 4.26274 4.27219 4.33564 4.39918 4.43880 4.49200 4.53005 4.55348 4.60861 4.62806 4.63993 4.71620 4.75860 4.79175 4.81902 4.88812 4.96013 5.05439 5.09897 5.13104 5.19266 5.20663 5.28172 5.29411 5.34498 5.37748 5.39898 5.42033 5.48014 5.67608 5.89207 6.08079 6.23098 6.59088 6.62111 7.14190 7.31195 7.58034 8.13838 8.71921 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.001581 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.602927 B =17703.933023 C =17789.958137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.058 3.942 4 C -0.112 4.112 5 C 0.128 3.872 6 N -0.720 5.720 7 C 0.520 3.480 8 O -0.577 6.577 9 C -0.076 4.076 10 C -0.140 4.140 11 C -0.103 4.103 12 C -0.125 4.125 13 C -0.116 4.116 14 C -0.136 4.136 15 C -0.091 4.091 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.087 0.913 51 H 0.066 0.934 52 H 0.108 0.892 53 H 0.395 0.605 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 25.569 16.713 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.070 4.070 4 C -0.151 4.151 5 C 0.004 3.996 6 N -0.372 5.372 7 C 0.308 3.692 8 O -0.457 6.457 9 C -0.079 4.079 10 C -0.197 4.197 11 C -0.141 4.141 12 C -0.163 4.163 13 C -0.154 4.154 14 C -0.173 4.173 15 C -0.129 4.129 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.106 0.894 51 H 0.084 0.916 52 H 0.126 0.874 53 H 0.229 0.771 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.076 25.401 17.003 30.586 hybrid contribution -0.161 -0.763 -1.374 1.580 sum -1.237 24.638 15.629 29.203 Atomic orbital electron populations 1.22464 0.86875 1.02216 1.00725 1.61515 1.08895 1.13480 1.42190 1.22082 1.00766 0.86827 0.97314 1.21613 1.02097 0.93181 0.98163 1.21144 0.99877 0.92391 0.86196 1.45973 1.57546 1.13733 1.19911 1.21054 0.77697 0.81387 0.89035 1.90619 1.41271 1.65342 1.48450 1.20898 0.98392 0.96677 0.91954 1.21884 0.90970 1.03434 1.03453 1.21646 0.94609 1.00506 0.97293 1.21579 0.96259 0.97170 1.01255 1.21525 0.99553 0.95490 0.98810 1.21755 0.95795 1.00267 0.99488 1.21370 0.95414 0.93849 1.02252 1.21746 1.02066 0.90283 0.93407 1.20764 0.83710 0.88747 0.83886 1.90453 1.45085 1.81439 1.32949 1.41946 1.50141 1.07077 1.22144 1.19628 1.34476 0.84054 1.08056 0.90226 1.26044 0.96296 1.04355 0.94685 1.69671 1.38158 1.37234 1.11175 0.84987 0.78619 0.76746 0.77965 1.19671 1.19587 1.19731 0.95486 0.92761 0.89730 0.93781 0.90003 0.90518 0.90336 0.92203 0.92409 0.75153 0.90922 0.89415 0.92955 0.88677 0.90360 0.94430 0.90563 0.92663 0.90552 0.92194 0.92200 0.93028 0.89401 0.91648 0.87376 0.77093 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.96 127.69 1.14 1.91 16 2 N -0.54 -16.70 4.50 -927.05 -4.17 -20.87 16 3 C 0.06 1.29 4.96 86.30 0.43 1.72 16 4 C -0.11 -2.00 5.25 30.59 0.16 -1.84 16 5 C 0.13 2.29 5.67 86.38 0.49 2.78 16 6 N -0.72 -11.19 5.34 -463.04 -2.47 -13.67 16 7 C 0.52 9.94 4.97 87.66 0.44 10.37 16 8 O -0.58 -15.86 13.66 -3.02 -0.04 -15.90 16 9 C -0.08 -0.96 0.62 -52.93 -0.03 -0.99 16 10 C -0.14 -1.19 8.37 71.98 0.60 -0.59 16 11 C -0.10 -0.98 4.64 30.59 0.14 -0.84 16 12 C -0.13 -1.65 5.70 30.59 0.17 -1.47 16 13 C -0.12 -1.57 5.92 30.60 0.18 -1.38 16 14 C -0.14 -2.30 5.63 30.59 0.17 -2.13 16 15 C -0.09 -1.29 4.37 30.59 0.13 -1.16 16 16 C 0.06 1.94 5.45 85.56 0.47 2.41 16 17 C 0.44 21.00 7.48 87.66 0.66 21.66 16 18 O -0.61 -33.53 13.91 -3.05 -0.04 -33.58 16 19 N -0.58 -29.66 5.29 -307.00 -1.62 -31.29 16 20 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.96 13.05 21.66 0.28 -49.67 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16 30 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 31 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.29 6.55 -2.39 -0.02 1.28 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 4.35 7.31 -92.71 -0.68 3.67 16 38 H 0.07 0.46 7.56 -2.39 -0.02 0.44 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 0.59 7.56 -2.38 -0.02 0.57 16 43 H 0.04 0.68 7.22 -2.39 -0.02 0.66 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 1.43 5.51 -2.39 -0.01 1.41 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 50 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 2.04 8.12 -2.39 -0.02 2.03 16 52 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 53 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 54 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -72.05 415.07 -0.13 -72.18 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.52 Total: 35.73 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.43 Total: 12.05 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -7.99 Total: -115.49 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.08 Total: -49.48 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.05 -0.13 -72.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660290730.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.753 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds