Wall clock time and date at job start Sat Apr 11 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.50700 * 110.01461 * 303.38122 * 3 2 1 5 5 O 1.21278 * 120.00062 * 125.29618 * 4 3 2 6 6 N 1.34780 * 120.00045 * 305.28751 * 4 3 2 7 7 C 1.46501 * 119.99830 * 174.87228 * 6 4 3 8 8 C 1.53002 * 109.46867 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47199 * 305.00371 * 8 7 6 10 10 C 1.52998 * 109.46807 * 65.00240 * 8 7 6 11 11 C 1.53000 * 109.46773 * 185.00003 * 8 7 6 12 12 N 1.46906 * 109.47038 * 175.00226 * 11 8 7 13 13 C 1.46897 * 111.00147 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47001 * 179.97438 * 13 12 11 15 15 O 1.21290 * 119.99976 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99702 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99622 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00530 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99767 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00232 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00104 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46852 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47330 * 119.99810 * 21 19 17 24 24 H 1.48501 * 109.47041 * 240.00039 * 21 19 17 25 25 C 1.54265 * 110.03197 * 181.93569 * 3 2 1 26 26 C 1.54892 * 104.19445 * 217.10676 * 25 3 2 27 27 C 1.54885 * 102.74985 * 37.94347 * 26 25 3 28 28 C 1.53877 * 110.02892 * 64.76871 * 3 2 1 29 29 H 1.08995 * 109.47013 * 55.14487 * 1 2 3 30 30 H 1.08999 * 109.46906 * 295.14032 * 1 2 3 31 31 H 1.09002 * 109.46667 * 175.14449 * 1 2 3 32 32 H 1.08999 * 109.47077 * 120.00622 * 2 1 3 33 33 H 1.09008 * 109.46697 * 240.00121 * 2 1 3 34 34 H 0.97003 * 119.99925 * 354.87782 * 6 4 3 35 35 H 1.09000 * 109.47446 * 300.00245 * 7 6 4 36 36 H 1.08999 * 109.46881 * 60.00205 * 7 6 4 37 37 H 1.09007 * 109.47173 * 60.00151 * 10 8 7 38 38 H 1.09004 * 109.47243 * 179.97438 * 10 8 7 39 39 H 1.08990 * 109.47621 * 299.99762 * 10 8 7 40 40 H 1.08994 * 109.47202 * 295.00005 * 11 8 7 41 41 H 1.09004 * 109.47239 * 55.00322 * 11 8 7 42 42 H 1.00896 * 110.99974 * 56.04331 * 12 11 8 43 43 H 1.08998 * 109.46665 * 299.99975 * 13 12 11 44 44 H 1.08996 * 109.47273 * 59.99866 * 13 12 11 45 45 H 0.96998 * 120.00140 * 359.97438 * 16 14 13 46 46 H 0.97003 * 120.00431 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.48721 * 335.78486 * 25 3 2 48 48 H 1.09001 * 110.48235 * 98.43257 * 25 3 2 49 49 H 1.09001 * 110.75263 * 279.63038 * 26 25 3 50 50 H 1.08998 * 110.75630 * 156.25954 * 26 25 3 51 51 H 1.08994 * 110.48766 * 203.38418 * 27 26 25 52 52 H 1.08995 * 110.48590 * 80.73185 * 27 26 25 53 53 H 1.08998 * 110.03265 * 238.56730 * 28 3 2 54 54 H 1.08994 * 110.03150 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4775 2.1885 -1.1824 5 8 0.8741 3.2268 -1.0131 6 7 1.6451 1.7019 -2.4281 7 6 1.0037 2.3652 -3.5660 8 6 1.3516 1.6173 -4.8546 9 1 2.4348 1.5416 -4.9496 10 6 0.7443 0.2137 -4.8094 11 6 0.7863 2.3792 -6.0549 12 7 1.2211 1.7275 -7.2976 13 6 0.6964 2.4337 -8.4740 14 6 1.1628 1.7381 -9.7268 15 8 1.8630 0.7509 -9.6475 16 7 0.8011 2.2125 -10.9354 17 6 1.2249 1.5793 -12.0751 18 1 1.8491 0.7008 -12.0046 19 6 0.8515 2.0680 -13.3211 20 7 0.0917 3.1368 -13.4070 21 14 1.4296 1.2059 -14.8741 22 1 2.2680 0.0361 -14.5080 23 1 0.2517 0.7469 -15.6532 24 1 2.2294 2.1496 -15.6957 25 6 3.5819 1.4579 -0.0490 26 6 3.9788 2.6489 0.8583 27 6 2.9445 2.5625 2.0079 28 6 1.6347 2.1448 1.3078 29 1 -0.3633 0.5873 -0.8433 30 1 -0.3633 0.4366 0.9303 31 1 -0.3633 -1.0240 -0.0870 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 2.1903 0.9124 -2.5711 35 1 -0.0772 2.3633 -3.4257 36 1 1.3593 3.3933 -3.6348 37 1 -0.3389 0.2894 -4.7144 38 1 0.9918 -0.3190 -5.7276 39 1 1.1470 -0.3290 -3.9543 40 1 -0.3026 2.3781 -6.0059 41 1 1.1498 3.4067 -6.0371 42 1 0.9519 0.7551 -7.3093 43 1 -0.3931 2.4333 -8.4418 44 1 1.0596 3.4614 -8.4727 45 1 0.2402 3.0013 -10.9987 46 1 -0.1693 3.4778 -14.2768 47 1 3.9854 0.5259 0.3467 48 1 3.9295 1.6227 -1.0688 49 1 3.8817 3.5925 0.3214 50 1 4.9920 2.5228 1.2400 51 1 2.8269 3.5334 2.4890 52 1 3.2450 1.8089 2.7356 53 1 1.0319 3.0257 1.0872 54 1 1.0751 1.4579 1.9425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666640550.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:42 Heat of formation + Delta-G solvation = -129.429531 kcal Electronic energy + Delta-G solvation = -29537.904350 eV Core-core repulsion = 25507.048268 eV Total energy + Delta-G solvation = -4030.856082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66736 -40.19832 -38.85383 -37.94666 -36.20005 -35.68886 -34.26505 -33.35326 -33.02218 -29.88086 -28.96032 -28.71101 -27.64170 -26.50393 -24.63828 -23.78867 -22.86237 -21.49748 -21.40662 -21.06386 -19.99309 -19.76671 -17.95062 -17.84254 -17.26073 -16.94091 -16.88722 -16.47820 -16.17583 -16.06655 -15.81077 -15.42999 -15.27242 -14.89487 -14.69774 -14.44064 -14.29651 -14.20276 -13.99616 -13.77898 -13.54313 -13.46645 -13.31152 -13.08976 -13.01713 -12.80688 -12.41225 -12.34237 -12.25615 -12.11907 -12.06207 -11.99960 -11.91243 -11.85731 -11.76362 -11.57534 -11.51767 -11.45483 -11.35074 -10.66351 -10.35175 -10.07252 -10.02207 -9.33889 -8.47245 -5.96209 1.36657 1.42026 1.56342 1.66100 2.04215 2.16090 2.29785 2.94469 3.20019 3.47489 3.52506 3.61125 3.70492 3.88964 3.90694 3.98166 4.09782 4.23967 4.30812 4.32315 4.35797 4.45981 4.51293 4.52108 4.56364 4.56940 4.64145 4.72265 4.74301 4.78247 4.79322 4.87580 4.93079 4.95200 5.00488 5.07911 5.08791 5.16242 5.21836 5.23793 5.27125 5.35109 5.35440 5.40761 5.41611 5.45189 5.55258 5.87730 6.09049 6.41035 6.56454 6.59230 7.11876 7.26518 7.55403 8.10309 8.70335 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029994 B = 0.001553 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.303753 B =18019.954657 C =18095.760751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.079 4.079 4 C 0.525 3.475 5 O -0.585 6.585 6 N -0.716 5.716 7 C 0.133 3.867 8 C -0.088 4.088 9 H 0.085 0.915 10 C -0.149 4.149 11 C 0.066 3.934 12 N -0.680 5.680 13 C 0.063 3.937 14 C 0.438 3.562 15 O -0.622 6.622 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.111 4.111 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.346 0.654 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.084 0.916 51 H 0.060 0.940 52 H 0.084 0.916 53 H 0.057 0.943 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -4.263 31.194 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.082 4.082 4 C 0.312 3.688 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.008 3.992 8 C -0.107 4.107 9 H 0.104 0.896 10 C -0.206 4.206 11 C -0.063 4.063 12 N -0.314 5.314 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.157 4.157 28 C -0.155 4.155 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.103 0.897 51 H 0.079 0.921 52 H 0.103 0.897 53 H 0.076 0.924 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.079 -3.765 31.157 31.534 hybrid contribution -1.027 -0.061 -1.290 1.650 sum 2.052 -3.825 29.867 30.181 Atomic orbital electron populations 1.21858 0.96202 1.02149 1.01271 1.21662 0.95599 0.92511 1.04422 1.21542 0.97425 0.96590 0.92650 1.20938 0.78373 0.84488 0.84963 1.90650 1.44217 1.25575 1.86022 1.45897 1.52492 1.32445 1.05947 1.21201 0.97423 0.96077 0.84491 1.21197 1.01895 0.95613 0.91971 0.89644 1.21867 1.00888 0.95418 1.02430 1.21962 0.97852 0.98573 0.87934 1.60084 1.64122 1.06750 1.00435 1.21538 0.98444 0.98804 0.88137 1.20863 0.84337 0.86730 0.85547 1.90483 1.42968 1.29978 1.87456 1.41946 1.46385 1.28060 1.04678 1.19723 1.30657 1.11388 0.84615 0.90226 1.26060 0.96481 0.96955 1.01831 1.69682 1.36258 1.23236 1.26982 0.84852 0.78203 0.78062 0.77091 1.19725 1.19571 1.19665 1.22524 0.91084 1.00502 1.00724 1.22520 0.99832 0.97652 0.96640 1.22349 0.94087 1.01641 0.97670 1.22262 0.98587 1.00446 0.94187 0.94755 0.92650 0.91150 0.88726 0.90165 0.75099 0.92079 0.92397 0.92507 0.92787 0.90840 0.94155 0.90447 0.83444 0.91640 0.87909 0.76988 0.91304 0.87882 0.91402 0.93560 0.89710 0.92104 0.89743 0.92443 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.45 71.98 0.68 -1.18 16 2 C -0.10 -0.92 4.52 30.60 0.14 -0.78 16 3 C -0.08 -1.03 0.54 -52.20 -0.03 -1.06 16 4 C 0.52 10.30 4.94 87.66 0.43 10.73 16 5 O -0.58 -16.81 15.23 -3.02 -0.05 -16.86 16 6 N -0.72 -11.28 4.97 -463.05 -2.30 -13.58 16 7 C 0.13 2.41 5.07 86.38 0.44 2.85 16 8 C -0.09 -1.57 2.63 -10.79 -0.03 -1.60 16 9 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 10 C -0.15 -2.43 8.84 71.98 0.64 -1.80 16 11 C 0.07 1.47 5.14 86.30 0.44 1.91 16 12 N -0.68 -20.78 6.12 -517.93 -3.17 -23.95 16 13 C 0.06 2.16 6.17 85.56 0.53 2.69 16 14 C 0.44 20.85 7.82 87.66 0.69 21.54 16 15 O -0.62 -34.38 15.78 -3.06 -0.05 -34.43 16 16 N -0.57 -29.56 5.29 -306.99 -1.62 -31.19 16 17 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 20 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 21 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C -0.11 -1.11 5.89 31.67 0.19 -0.93 16 26 C -0.13 -1.54 6.91 31.88 0.22 -1.32 16 27 C -0.12 -1.39 6.83 31.67 0.22 -1.18 16 28 C -0.12 -1.72 5.59 31.32 0.18 -1.54 16 29 H 0.03 0.55 6.97 -2.39 -0.02 0.53 16 30 H 0.05 0.68 6.92 -2.39 -0.02 0.67 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.51 7.55 -2.38 -0.02 0.49 16 34 H 0.41 4.50 7.01 -92.71 -0.65 3.85 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.05 1.06 6.68 -2.38 -0.02 1.04 16 39 H 0.07 0.90 7.18 -2.39 -0.02 0.89 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 42 H 0.35 10.95 6.68 -89.70 -0.60 10.35 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.10 3.20 8.14 -2.39 -0.02 3.19 16 45 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 46 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.10 0.59 7.85 -2.39 -0.02 0.57 16 48 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 51 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.06 1.23 6.40 -2.39 -0.02 1.21 16 54 H 0.08 0.96 6.66 -2.39 -0.02 0.94 16 Total: -1.00 -72.45 421.79 0.05 -72.40 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -1.08 Total: 42.36 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.00 Total: 9.83 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.81 Total: -118.25 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.09 Total: -51.29 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.45 0.05 -72.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666640550.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.031 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds