Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.52310 * 2 1 4 4 N 1.46498 * 109.47150 * 59.92254 * 3 2 1 5 5 C 1.34778 * 120.00218 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99698 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00323 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.47254 * 180.02562 * 7 5 4 9 9 N 1.46899 * 109.46937 * 180.02562 * 8 7 5 10 10 C 1.47010 * 110.99996 * 293.63273 * 9 8 7 11 11 C 1.53103 * 109.26051 * 177.61036 * 10 9 8 12 12 O 1.43017 * 109.25492 * 56.84710 * 11 10 9 13 13 C 1.43017 * 113.74088 * 301.33132 * 12 11 10 14 14 C 1.47019 * 110.99879 * 169.99873 * 9 8 7 15 15 C 1.53039 * 109.49407 * 239.92053 * 2 1 3 16 16 C 1.53041 * 109.53864 * 301.40878 * 15 2 1 17 17 C 1.53186 * 109.31599 * 298.64099 * 16 15 2 18 18 N 1.46926 * 108.77707 * 54.63236 * 17 16 15 19 19 C 1.36933 * 120.63202 * 126.37769 * 18 17 16 20 20 H 1.08005 * 119.99488 * 331.82129 * 19 18 17 21 21 C 1.38812 * 120.00360 * 151.82650 * 19 18 17 22 22 N 1.31618 * 119.99806 * 343.08710 * 21 19 18 23 23 Si 1.86805 * 119.99880 * 163.08777 * 21 19 18 24 24 H 1.48497 * 109.47059 * 59.99639 * 23 21 19 25 25 H 1.48506 * 109.46738 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46873 * 299.99624 * 23 21 19 27 27 C 1.46928 * 118.74020 * 306.39049 * 18 17 16 28 28 H 1.09002 * 109.47116 * 180.08790 * 1 2 3 29 29 H 1.09007 * 109.46939 * 300.08037 * 1 2 3 30 30 H 1.08993 * 109.47432 * 60.08010 * 1 2 3 31 31 H 1.09002 * 109.47219 * 179.91884 * 3 2 1 32 32 H 1.09001 * 109.46842 * 299.92082 * 3 2 1 33 33 H 0.97008 * 120.00091 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.47274 * 300.00677 * 7 5 4 35 35 H 1.09003 * 109.46821 * 59.99939 * 7 5 4 36 36 H 1.09002 * 109.47219 * 300.00090 * 8 7 5 37 37 H 1.08991 * 109.46903 * 60.00135 * 8 7 5 38 38 H 1.09002 * 109.50751 * 297.54261 * 10 9 8 39 39 H 1.09003 * 109.50947 * 57.67656 * 10 9 8 40 40 H 1.08997 * 109.50569 * 296.91807 * 11 10 9 41 41 H 1.08995 * 109.50911 * 176.78158 * 11 10 9 42 42 H 1.09000 * 109.50588 * 298.74076 * 13 12 11 43 43 H 1.09001 * 109.50477 * 178.60818 * 13 12 11 44 44 H 1.09000 * 109.50556 * 302.33034 * 14 9 8 45 45 H 1.09005 * 109.50557 * 62.41305 * 14 9 8 46 46 H 1.09002 * 109.45389 * 181.39275 * 15 2 1 47 47 H 1.08996 * 109.46273 * 61.43296 * 15 2 1 48 48 H 1.09007 * 109.49539 * 58.59109 * 16 15 2 49 49 H 1.08997 * 109.49723 * 178.68274 * 16 15 2 50 50 H 1.09001 * 109.58815 * 174.42320 * 17 16 15 51 51 H 1.09007 * 109.58580 * 294.84461 * 17 16 15 52 52 H 0.97001 * 119.99503 * 180.02562 * 22 21 19 53 53 H 1.08991 * 109.58824 * 173.39356 * 27 18 17 54 54 H 1.09001 * 109.59060 * 293.68409 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5521 2.1336 1.1952 5 6 1.8790 3.4236 1.4086 6 8 2.5778 4.0120 0.6109 7 6 1.3753 4.1352 2.6378 8 6 1.8867 5.5772 2.6379 9 7 1.3962 6.2706 3.8364 10 6 -0.0652 6.4249 3.7948 11 6 -0.5392 7.0969 5.0862 12 8 0.1334 8.3496 5.2403 13 6 1.5583 8.2365 5.2853 14 6 2.0534 7.5760 3.9959 15 6 2.0407 -0.7231 -1.2484 16 6 1.5030 -2.1558 -1.2660 17 6 2.0139 -2.9040 -0.0308 18 7 1.6515 -2.1382 1.1695 19 6 0.9633 -2.7312 2.1941 20 1 0.3010 -3.5599 1.9912 21 6 1.1166 -2.2672 3.4934 22 7 2.1428 -1.5032 3.8025 23 14 -0.1335 -2.7273 4.8030 24 1 -0.1738 -4.2042 4.9518 25 1 0.2552 -2.1102 6.0967 26 1 -1.4753 -2.2334 4.4017 27 6 2.0413 -0.7238 1.2496 28 1 -0.3633 -1.0277 0.0016 29 1 -0.3633 0.5151 0.8893 30 1 -0.3634 0.5125 -0.8906 31 1 3.1313 1.4411 0.0015 32 1 1.6796 1.9557 -0.8907 33 1 0.9928 1.6631 1.8331 34 1 0.2853 4.1366 2.6358 35 1 1.7363 3.6212 3.5287 36 1 2.9767 5.5762 2.6397 37 1 1.5254 6.0908 1.7471 38 1 -0.3419 7.0426 2.9404 39 1 -0.5323 5.4443 3.7022 40 1 -0.3103 6.4541 5.9362 41 1 -1.6149 7.2651 5.0355 42 1 1.8481 7.6267 6.1410 43 1 1.9995 9.2288 5.3786 44 1 3.1330 7.4357 4.0500 45 1 1.8113 8.2119 3.1443 46 1 3.1305 -0.7443 -1.2353 47 1 1.6987 -0.1958 -2.1389 48 1 0.4132 -2.1355 -1.2541 49 1 1.8480 -2.6628 -2.1671 50 1 1.5554 -3.8919 0.0137 51 1 3.0979 -3.0043 -0.0868 52 1 2.2501 -1.1794 4.7105 53 1 1.6008 -0.2731 2.1388 54 1 3.1274 -0.6464 1.3005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724339754.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -85.250812 kcal Electronic energy + Delta-G solvation = -31035.243368 eV Core-core repulsion = 27006.303019 eV Total energy + Delta-G solvation = -4028.940349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.15635 -40.48409 -39.73878 -37.05981 -36.26476 -34.87414 -33.16998 -32.42580 -31.98448 -31.55369 -28.40999 -27.88019 -27.21955 -26.58010 -25.03102 -24.04042 -23.50917 -22.04074 -21.41478 -21.15521 -19.55705 -18.52833 -18.31261 -17.28000 -17.21440 -17.00745 -16.78665 -16.62621 -16.08310 -15.95093 -15.81008 -15.53636 -15.41632 -15.19339 -15.07844 -14.74329 -14.50227 -14.18751 -14.09832 -13.76139 -13.64221 -13.34655 -13.06740 -13.05153 -13.00181 -12.69178 -12.54851 -12.51418 -12.33645 -12.26397 -12.15815 -11.90141 -11.84313 -11.71505 -11.49525 -11.39960 -11.23509 -10.96176 -10.85748 -10.68299 -10.48291 -10.01833 -9.47421 -8.59812 -7.81443 -5.26630 1.50491 1.52050 1.58634 1.64083 2.17051 2.55068 2.79358 2.96867 3.31095 3.62758 3.74580 3.85962 3.92053 3.96774 4.01525 4.04513 4.05858 4.09754 4.19263 4.31341 4.35631 4.37608 4.47593 4.53529 4.56907 4.62132 4.72498 4.75317 4.76310 4.80576 4.80883 4.85174 4.87619 4.93312 5.00310 5.02241 5.05408 5.12655 5.18293 5.31100 5.34679 5.42165 5.49076 5.54924 5.65151 5.74376 5.80394 5.85662 5.90661 6.16297 6.44317 6.55267 7.20861 7.22775 7.91471 8.44461 9.23667 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002810 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.743454 B = 9960.316159 C =11667.303769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C 0.143 3.857 4 N -0.716 5.716 5 C 0.512 3.488 6 O -0.588 6.588 7 C -0.130 4.130 8 C 0.083 3.917 9 N -0.544 5.544 10 C 0.011 3.989 11 C 0.062 3.938 12 O -0.405 6.405 13 C 0.064 3.936 14 C 0.017 3.983 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.604 5.604 19 C -0.258 4.258 20 H 0.062 0.938 21 C -0.042 4.042 22 N -0.930 5.930 23 Si 0.958 3.042 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.198 3.802 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.408 0.592 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.038 0.962 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.051 0.949 51 H 0.006 0.994 52 H 0.249 0.751 53 H 0.067 0.933 54 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 15.061 -2.645 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C 0.018 3.982 4 N -0.367 5.367 5 C 0.300 3.700 6 O -0.469 6.469 7 C -0.170 4.170 8 C -0.045 4.045 9 N -0.270 5.270 10 C -0.117 4.117 11 C -0.014 4.014 12 O -0.324 6.324 13 C -0.013 4.013 14 C -0.111 4.111 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.327 5.327 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.201 1.201 27 C 0.072 3.928 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.244 0.756 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.113 0.887 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.069 0.931 51 H 0.024 0.976 52 H 0.058 0.942 53 H 0.085 0.915 54 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -4.346 15.385 -2.629 16.202 hybrid contribution -0.283 -0.579 0.465 0.795 sum -4.629 14.806 -2.164 15.663 Atomic orbital electron populations 1.21632 0.93451 1.01856 1.00585 1.21334 0.97079 0.92763 0.98049 1.21247 0.97853 0.91599 0.87490 1.46123 1.52922 1.11825 1.25808 1.21013 0.79535 0.81772 0.87683 1.90650 1.40103 1.67156 1.48988 1.21579 1.03615 0.95885 0.95878 1.21634 1.00222 0.92383 0.90303 1.62201 1.05703 1.20333 1.38747 1.22943 0.88190 1.02111 0.98475 1.22791 0.97862 0.84795 0.95997 1.87951 1.19578 1.30805 1.94107 1.22784 0.80470 1.02084 0.95956 1.22837 1.00508 0.89192 0.98586 1.21382 0.99655 0.95939 0.96401 1.21921 1.00994 0.95605 0.97681 1.21098 0.95871 0.94634 0.87342 1.44227 1.65276 1.06506 1.16713 1.19389 1.17529 1.15297 0.86592 0.91993 1.25645 0.98424 1.01104 0.98580 1.70179 1.28748 1.39926 1.18745 0.85497 0.79631 0.77677 0.78540 1.20970 1.22172 1.20057 1.20548 0.93722 0.83666 0.94880 0.92634 0.93918 0.91955 0.93601 0.91056 0.75575 0.86943 0.87526 0.90913 0.94782 0.94322 0.88284 0.92031 0.86731 0.92028 0.86600 0.88746 0.94360 0.93195 0.90400 0.91669 0.90311 0.93075 0.97641 0.94162 0.91501 1.00267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 7.81 71.98 0.56 -3.12 16 2 C -0.09 -3.02 0.53 -52.10 -0.03 -3.05 16 3 C 0.14 4.55 4.57 86.38 0.39 4.94 16 4 N -0.72 -21.97 5.00 -463.06 -2.31 -24.29 16 5 C 0.51 15.55 7.83 87.66 0.69 16.23 16 6 O -0.59 -21.56 15.98 -3.05 -0.05 -21.61 16 7 C -0.13 -3.01 5.64 29.85 0.17 -2.84 16 8 C 0.08 1.91 4.25 86.30 0.37 2.28 16 9 N -0.54 -11.06 4.73 -895.20 -4.23 -15.29 16 10 C 0.01 0.19 5.44 86.32 0.47 0.66 16 11 C 0.06 1.02 7.01 72.02 0.50 1.53 16 12 O -0.41 -8.02 10.83 -148.98 -1.61 -9.64 16 13 C 0.06 1.03 7.01 72.01 0.50 1.53 16 14 C 0.02 0.30 5.64 86.31 0.49 0.79 16 15 C -0.10 -2.87 4.71 30.62 0.14 -2.73 16 16 C -0.12 -3.78 5.74 30.67 0.18 -3.61 16 17 C 0.14 5.41 6.52 86.36 0.56 5.97 16 18 N -0.60 -28.50 2.43 -699.10 -1.70 -30.20 16 19 C -0.26 -13.39 9.58 84.03 0.81 -12.58 16 20 H 0.06 3.18 7.89 -2.91 -0.02 3.15 16 21 C -0.04 -2.20 4.92 84.86 0.42 -1.78 16 22 N -0.93 -51.85 11.20 21.65 0.24 -51.61 16 23 Si 0.96 42.49 29.59 68.60 2.03 44.52 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C 0.20 8.77 3.72 86.36 0.32 9.09 16 28 H 0.05 1.94 5.97 -2.39 -0.01 1.92 16 29 H 0.04 1.33 6.86 -2.38 -0.02 1.31 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.41 12.44 6.22 -92.70 -0.58 11.87 16 34 H 0.11 2.11 6.52 -2.39 -0.02 2.10 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 1.84 8.00 -2.39 -0.02 1.83 16 37 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 38 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 1.54 6.38 -2.39 -0.02 1.52 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 45 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.06 2.00 6.34 -2.38 -0.02 1.98 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 51 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 52 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 53 H 0.07 3.24 4.97 -2.39 -0.01 3.22 16 54 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 Total: -1.00 -64.79 405.65 -0.79 -65.58 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.29 Total: 29.21 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.54 Total: 13.32 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -8.00 Total: -121.38 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.66 Total: -31.24 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.79 -0.79 -65.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724339754.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.670 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds