Wall clock time and date at job start Sat Apr 11 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99758 * 2 1 4 4 C 1.53001 * 109.46553 * 269.99563 * 3 2 1 5 5 C 1.52998 * 109.46653 * 180.02562 * 4 3 2 6 6 N 1.46908 * 109.47163 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99945 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47086 * 179.97438 * 7 6 5 9 9 O 1.21297 * 120.00024 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00390 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00282 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99932 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99834 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99515 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00280 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47347 * 89.99914 * 15 13 11 17 17 H 1.48499 * 109.47438 * 209.99919 * 15 13 11 18 18 H 1.48502 * 109.47434 * 330.00250 * 15 13 11 19 19 C 1.34773 * 119.99753 * 179.97438 * 2 1 3 20 20 O 1.21284 * 119.99555 * 175.00282 * 19 2 1 21 21 C 1.50693 * 120.00366 * 355.00508 * 19 2 1 22 22 H 1.09001 * 110.01879 * 333.23682 * 21 19 2 23 23 C 1.54270 * 110.03443 * 211.79429 * 21 19 2 24 24 C 1.54889 * 104.19779 * 217.10381 * 23 21 19 25 25 C 1.54891 * 102.74752 * 37.94074 * 24 23 21 26 26 C 1.53875 * 110.03318 * 94.62611 * 21 19 2 27 27 C 1.53000 * 110.03592 * 238.56899 * 26 21 19 28 28 C 1.53001 * 110.03230 * 359.95356 * 26 21 19 29 29 H 1.09002 * 109.46781 * 95.47550 * 1 2 3 30 30 H 1.08995 * 109.47227 * 215.47385 * 1 2 3 31 31 H 1.08994 * 109.47523 * 335.47943 * 1 2 3 32 32 H 1.09001 * 109.46878 * 149.99787 * 3 2 1 33 33 H 1.09001 * 109.46909 * 29.99473 * 3 2 1 34 34 H 1.09001 * 109.47346 * 60.00510 * 4 3 2 35 35 H 1.08997 * 109.47598 * 300.00089 * 4 3 2 36 36 H 1.08999 * 109.47328 * 299.99825 * 5 4 3 37 37 H 1.08999 * 109.47789 * 59.99774 * 5 4 3 38 38 H 1.00900 * 110.99562 * 303.94798 * 6 5 4 39 39 H 1.09005 * 109.47122 * 299.99859 * 7 6 5 40 40 H 1.09006 * 109.47367 * 59.99772 * 7 6 5 41 41 H 0.97001 * 120.00061 * 0.02562 * 10 8 7 42 42 H 0.97003 * 119.99683 * 179.97438 * 14 13 11 43 43 H 1.09000 * 110.48472 * 335.78267 * 23 21 19 44 44 H 1.09000 * 110.48404 * 98.42702 * 23 21 19 45 45 H 1.09000 * 110.76070 * 279.63164 * 24 23 21 46 46 H 1.08999 * 110.91307 * 156.32917 * 24 23 21 47 47 H 1.09000 * 110.49107 * 203.37761 * 25 24 23 48 48 H 1.09000 * 110.59781 * 80.78886 * 25 24 23 49 49 H 1.09007 * 109.46786 * 59.99847 * 27 26 21 50 50 H 1.08996 * 109.47497 * 180.02562 * 27 26 21 51 51 H 1.09004 * 109.46955 * 300.00244 * 27 26 21 52 52 H 1.08997 * 109.47097 * 55.24069 * 28 26 21 53 53 H 1.09002 * 109.47053 * 175.24150 * 28 26 21 54 54 H 1.09002 * 109.47087 * 295.24471 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2180 3.0350 -1.4426 6 7 3.4624 3.4593 -2.8277 7 6 4.1966 4.7311 -2.8668 8 6 4.4287 5.1331 -4.3005 9 8 4.0222 4.4296 -5.2011 10 7 5.0872 6.2748 -4.5821 11 6 5.2980 6.6407 -5.8865 12 1 4.9360 6.0143 -6.6883 13 6 5.9774 7.8176 -6.1767 14 7 6.1790 8.1686 -7.4270 15 14 6.6029 8.9014 -4.7899 16 1 7.9813 8.4886 -4.4222 17 1 6.6126 10.3182 -5.2347 18 1 5.7124 8.7590 -3.6101 19 6 2.1389 -1.1672 0.0005 20 8 3.3483 -1.1692 -0.0910 21 6 1.3897 -2.4697 0.1147 22 1 0.4486 -2.3139 0.6420 23 6 2.2494 -3.5101 0.8621 24 6 1.9385 -4.8465 0.1436 25 6 1.8249 -4.4182 -1.3406 26 6 1.1198 -3.0471 -1.2858 27 6 -0.3850 -3.2228 -1.4993 28 6 1.6956 -2.1174 -2.3559 29 1 -0.3633 -0.0981 -1.0230 30 1 -0.3633 -0.8369 0.5964 31 1 -0.3634 0.9349 0.4265 32 1 3.1499 1.1385 0.5139 33 1 1.6083 2.0284 0.5138 34 1 1.5001 1.8406 -1.9564 35 1 3.0416 0.9507 -1.9564 36 1 2.6293 3.7949 -0.9287 37 1 4.1704 2.9044 -0.9288 38 1 3.9509 2.7434 -3.3443 39 1 3.6144 5.5024 -2.3626 40 1 5.1560 4.6125 -2.3632 41 1 5.4121 6.8376 -3.8620 42 1 6.6529 8.9903 -7.6297 43 1 3.3078 -3.2658 0.7721 44 1 1.9571 -3.5638 1.9108 45 1 0.9967 -5.2657 0.4977 46 1 2.7520 -5.5593 0.2787 47 1 1.2229 -5.1347 -1.8995 48 1 2.8139 -4.3209 -1.7885 49 1 -0.8801 -2.2559 -1.4088 50 1 -0.5657 -3.6324 -2.4931 51 1 -0.7813 -3.9057 -0.7477 52 1 2.7549 -1.9508 -2.1607 53 1 1.5746 -2.5748 -3.3379 54 1 1.1674 -1.1642 -2.3314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733120062.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:19 Heat of formation + Delta-G solvation = -108.711549 kcal Electronic energy + Delta-G solvation = -29983.570714 eV Core-core repulsion = 25953.613031 eV Total energy + Delta-G solvation = -4029.957683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81782 -40.33757 -38.99997 -37.55964 -36.51795 -35.91301 -33.79265 -33.21483 -32.97451 -30.37736 -28.85504 -28.32176 -27.56490 -26.49378 -25.52022 -24.49555 -22.70963 -21.77355 -21.30423 -20.86873 -20.26447 -19.03353 -18.26929 -17.83805 -17.20752 -17.07516 -16.84638 -16.66533 -16.02754 -15.77083 -15.66302 -15.59201 -15.05330 -14.92560 -14.63316 -14.53133 -14.32474 -14.27220 -14.10792 -13.81562 -13.63307 -13.43702 -13.34174 -13.09984 -12.91451 -12.84965 -12.75312 -12.69194 -12.43429 -12.36605 -12.27074 -11.98725 -11.95207 -11.73990 -11.68630 -11.53658 -11.51475 -11.43099 -11.33315 -10.65096 -10.47995 -10.27427 -9.65224 -9.38224 -8.43152 -6.04509 1.29313 1.34626 1.43918 1.63440 1.92366 2.04517 2.21862 2.71780 3.12913 3.38092 3.41395 3.55356 3.63023 3.89446 4.05573 4.10475 4.14465 4.25741 4.28570 4.34104 4.36115 4.39723 4.41134 4.44982 4.48574 4.51194 4.53150 4.65250 4.70737 4.72494 4.75417 4.79605 4.85283 4.93504 5.01160 5.02411 5.06156 5.10940 5.17259 5.20213 5.22579 5.32536 5.34731 5.43025 5.50774 5.52962 5.60415 5.88242 6.03227 6.28773 6.41867 6.57518 6.85388 7.22579 7.36825 7.93450 8.74513 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.001759 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.852897 B =15914.133325 C =16280.990558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.616 5.616 3 C 0.121 3.879 4 C -0.119 4.119 5 C 0.067 3.933 6 N -0.689 5.689 7 C 0.062 3.938 8 C 0.446 3.554 9 O -0.617 6.617 10 N -0.589 5.589 11 C -0.331 4.331 12 H 0.054 0.946 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.230 1.230 19 C 0.520 3.480 20 O -0.585 6.585 21 C -0.105 4.105 22 H 0.120 0.880 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.049 4.049 27 C -0.137 4.137 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.339 0.661 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.035 0.965 53 H 0.059 0.941 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -22.069 26.438 37.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.348 5.348 3 C -0.002 4.002 4 C -0.158 4.158 5 C -0.063 4.063 6 N -0.321 5.321 7 C -0.070 4.070 8 C 0.234 3.766 9 O -0.501 6.501 10 N -0.231 5.231 11 C -0.460 4.460 12 H 0.072 0.928 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.153 1.153 19 C 0.310 3.690 20 O -0.465 6.465 21 C -0.126 4.126 22 H 0.138 0.862 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.049 4.049 27 C -0.194 4.194 28 C -0.208 4.208 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.054 0.946 53 H 0.078 0.922 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.571 -22.077 25.577 37.203 hybrid contribution 1.816 0.718 -0.264 1.970 sum -13.756 -21.359 25.313 35.863 Atomic orbital electron populations 1.22188 0.77311 1.05153 1.02820 1.48007 1.08413 1.05451 1.72894 1.21432 0.97807 0.85238 0.95759 1.21753 1.00702 0.95704 0.97684 1.21948 0.99240 0.97089 0.87975 1.60110 1.52806 1.04738 1.14417 1.21647 0.99230 0.94570 0.91582 1.21018 0.81194 0.82008 0.92360 1.90543 1.54784 1.54659 1.50129 1.42021 1.52410 1.21829 1.06842 1.19015 1.36059 1.07361 0.83606 0.92806 1.26156 0.96766 0.98343 1.00191 1.69810 1.41854 1.25422 1.20308 0.85337 0.79893 0.77728 0.78389 1.18202 1.19831 1.15338 1.20992 0.87496 0.86358 0.74121 1.90669 1.16563 1.87741 1.51503 1.22255 1.00413 0.91376 0.98521 0.86172 1.22369 0.99362 0.94214 0.99486 1.22452 1.02601 0.96062 0.94137 1.22510 0.99839 0.95527 0.97682 1.21047 0.97428 0.94787 0.91662 1.21959 0.92027 1.02802 1.02645 1.22092 1.00018 0.99416 0.99286 0.92197 0.89043 0.88798 0.91661 0.87309 0.91189 0.94536 0.88752 0.94656 0.84328 0.86323 0.90746 0.77384 0.91084 0.92842 0.89937 0.89259 0.91238 0.89899 0.93434 0.91597 0.92183 0.90571 0.94632 0.92185 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 9.80 127.77 1.25 1.78 16 2 N -0.62 -9.76 2.61 -846.75 -2.21 -11.97 16 3 C 0.12 2.04 5.41 86.38 0.47 2.50 16 4 C -0.12 -2.58 5.80 30.59 0.18 -2.41 16 5 C 0.07 1.48 5.69 86.30 0.49 1.97 16 6 N -0.69 -21.84 6.13 -517.93 -3.17 -25.01 16 7 C 0.06 1.99 6.17 85.56 0.53 2.51 16 8 C 0.45 20.99 7.82 87.66 0.69 21.67 16 9 O -0.62 -35.69 15.78 -3.08 -0.05 -35.74 16 10 N -0.59 -28.59 5.09 -306.98 -1.56 -30.15 16 11 C -0.33 -19.88 10.16 84.04 0.85 -19.03 16 12 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 13 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 14 N -0.93 -57.08 13.96 21.66 0.30 -56.77 16 15 Si 0.97 39.29 27.74 68.60 1.90 41.19 16 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 19 C 0.52 10.68 4.57 87.66 0.40 11.08 16 20 O -0.58 -17.53 14.36 -3.04 -0.04 -17.58 16 21 C -0.10 -1.45 2.38 -10.82 -0.03 -1.48 16 22 H 0.12 0.96 5.44 -2.39 -0.01 0.95 16 23 C -0.12 -1.69 6.31 31.67 0.20 -1.49 16 24 C -0.12 -1.27 6.91 31.89 0.22 -1.05 16 25 C -0.12 -1.60 5.90 31.67 0.19 -1.41 16 26 C -0.05 -0.66 0.94 -51.46 -0.05 -0.71 16 27 C -0.14 -1.13 8.14 71.98 0.59 -0.55 16 28 C -0.15 -2.98 7.21 71.98 0.52 -2.46 16 29 H 0.06 0.50 7.21 -2.39 -0.02 0.48 16 30 H 0.09 0.35 5.91 -2.39 -0.01 0.34 16 31 H 0.09 0.42 7.83 -2.39 -0.02 0.40 16 32 H 0.06 1.34 7.50 -2.39 -0.02 1.32 16 33 H 0.11 1.15 7.86 -2.39 -0.02 1.14 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.34 12.04 8.43 -89.69 -0.76 11.28 16 39 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.05 1.13 6.90 -2.39 -0.02 1.12 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 0.87 7.84 -2.39 -0.02 0.85 16 48 H 0.05 0.85 7.85 -2.39 -0.02 0.83 16 49 H 0.07 0.45 7.31 -2.38 -0.02 0.43 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 52 H 0.03 0.94 6.54 -2.39 -0.02 0.92 16 53 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.05 1.08 6.94 -2.39 -0.02 1.06 16 Total: -1.00 -84.85 417.83 1.67 -83.19 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: -0.46 Total: 42.33 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.96 Total: 10.52 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -6.65 Total: -123.90 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.09 Total: -53.32 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -84.85 1.67 -83.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733120062.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.526 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds