Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99822 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00192 * 3 2 1 5 5 C 1.52999 * 109.46623 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.46897 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47041 * 179.97438 * 7 6 5 9 9 O 1.21297 * 119.99525 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00156 * 180.02562 * 8 7 6 11 11 C 1.37103 * 120.00289 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99945 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99987 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00492 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99597 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46835 * 89.99959 * 15 13 11 17 17 H 1.48497 * 109.47233 * 209.99835 * 15 13 11 18 18 H 1.48499 * 109.47400 * 330.00187 * 15 13 11 19 19 C 1.34777 * 120.00054 * 180.02562 * 2 1 3 20 20 O 1.21275 * 119.99803 * 179.97438 * 19 2 1 21 21 C 1.50699 * 120.00130 * 359.97438 * 19 2 1 22 22 H 1.09007 * 110.67090 * 300.70432 * 21 19 2 23 23 C 1.54893 * 110.75513 * 63.93727 * 21 19 2 24 24 C 1.54274 * 104.19295 * 156.25910 * 23 21 19 25 25 C 1.53869 * 106.59599 * 336.38659 * 24 23 21 26 26 C 1.53003 * 110.03167 * 119.28827 * 25 24 23 27 27 C 1.53002 * 110.03304 * 240.66593 * 25 24 23 28 28 C 1.54465 * 106.69064 * 0.16197 * 25 24 23 29 29 H 1.09007 * 109.47177 * 89.99828 * 1 2 3 30 30 H 1.09002 * 109.47019 * 209.99587 * 1 2 3 31 31 H 1.09001 * 109.47429 * 329.99755 * 1 2 3 32 32 H 1.08993 * 109.47452 * 150.00270 * 3 2 1 33 33 H 1.09000 * 109.47175 * 30.00060 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99945 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00058 * 4 3 2 36 36 H 1.09000 * 109.47486 * 299.99829 * 5 4 3 37 37 H 1.09001 * 109.47362 * 60.00551 * 5 4 3 38 38 H 1.00901 * 111.00013 * 303.95615 * 6 5 4 39 39 H 1.08997 * 109.47334 * 299.99788 * 7 6 5 40 40 H 1.09004 * 109.47141 * 60.00372 * 7 6 5 41 41 H 0.97003 * 120.00436 * 359.97438 * 10 8 7 42 42 H 0.96997 * 120.00382 * 179.97438 * 14 13 11 43 43 H 1.08999 * 110.48177 * 274.93200 * 23 21 19 44 44 H 1.08998 * 110.48608 * 37.57790 * 23 21 19 45 45 H 1.08996 * 110.03274 * 95.67496 * 24 23 21 46 46 H 1.08994 * 110.02507 * 217.10238 * 24 23 21 47 47 H 1.09008 * 109.46897 * 61.44928 * 26 25 24 48 48 H 1.09000 * 109.47458 * 181.44785 * 26 25 24 49 49 H 1.09003 * 109.47063 * 301.45386 * 26 25 24 50 50 H 1.09003 * 109.46808 * 58.54907 * 27 25 24 51 51 H 1.09001 * 109.47383 * 178.55013 * 27 25 24 52 52 H 1.09004 * 109.47052 * 298.55122 * 27 25 24 53 53 H 1.08997 * 110.40340 * 264.75786 * 28 25 24 54 54 H 1.08993 * 110.66177 * 142.04898 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2168 3.0358 -1.4425 6 7 3.4622 3.4596 -2.8275 7 6 4.1964 4.7314 -2.8666 8 6 4.4296 5.1329 -4.3004 9 8 4.0236 4.4290 -5.2009 10 7 5.0892 6.2739 -4.5819 11 6 5.3009 6.6394 -5.8862 12 1 4.9394 6.0128 -6.6881 13 6 5.9814 7.8156 -6.1764 14 7 6.4217 8.5779 -5.2007 15 14 6.2704 8.3132 -7.9536 16 1 5.1350 9.1461 -8.4253 17 1 7.5303 9.0932 -8.0506 18 1 6.3756 7.0960 -8.7977 19 6 2.1389 -1.1672 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4723 -0.0005 22 1 0.7424 -2.5454 0.8766 23 6 0.5594 -2.6292 -1.3014 24 6 0.3707 -4.1533 -1.4481 25 6 1.5181 -4.8156 -0.6654 26 6 0.9519 -5.6873 0.4573 27 6 2.3732 -5.6654 -1.6075 28 6 2.3641 -3.6711 -0.0652 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 3.1499 1.1385 0.5137 33 1 1.6084 2.0284 0.5138 34 1 3.0415 0.9508 -1.9564 35 1 1.5000 1.8407 -1.9563 36 1 2.6274 3.7952 -0.9288 37 1 4.1693 2.9059 -0.9286 38 1 3.9517 2.7438 -3.3434 39 1 3.6139 5.5029 -2.3631 40 1 5.1554 4.6129 -2.3623 41 1 5.4135 6.8370 -3.8617 42 1 6.8970 9.3988 -5.4033 43 1 -0.4061 -2.1331 -1.2022 44 1 1.1094 -2.2291 -2.1531 45 1 -0.5894 -4.4528 -1.0281 46 1 0.4236 -4.4365 -2.4993 47 1 0.3363 -6.4779 0.0282 48 1 1.7721 -6.1312 1.0215 49 1 0.3438 -5.0738 1.1221 50 1 2.7708 -5.0363 -2.4040 51 1 3.1974 -6.1092 -1.0492 52 1 1.7604 -6.4560 -2.0407 53 1 3.2075 -3.4404 -0.7159 54 1 2.7124 -3.9334 0.9337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733125329.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -119.761053 kcal Electronic energy + Delta-G solvation = -29206.218008 eV Core-core repulsion = 25175.781182 eV Total energy + Delta-G solvation = -4030.436826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45493 -40.18809 -39.30068 -37.61396 -36.52415 -35.87290 -33.79777 -33.29057 -32.38282 -29.92634 -28.89320 -28.14282 -27.59102 -26.81322 -25.70197 -24.39820 -22.71792 -22.22767 -21.08759 -19.95157 -19.86947 -19.65062 -18.25281 -17.85930 -17.16894 -17.08637 -16.67767 -16.45558 -16.06963 -15.84479 -15.73259 -15.42112 -15.06260 -14.86362 -14.62440 -14.45102 -14.31321 -14.18338 -14.04787 -13.82921 -13.56689 -13.33346 -13.20819 -13.04150 -12.97165 -12.89363 -12.70855 -12.57985 -12.44565 -12.40039 -12.34489 -12.12932 -12.02845 -11.71365 -11.63120 -11.52678 -11.45213 -11.38066 -11.29228 -10.72916 -10.38907 -10.03911 -9.68023 -9.38671 -8.48334 -5.97584 1.37130 1.40812 1.53868 1.60204 2.02217 2.03296 2.28373 2.91782 3.18528 3.40457 3.49878 3.50385 3.72479 3.91470 4.08562 4.12094 4.21683 4.27526 4.28331 4.34959 4.35337 4.41844 4.46115 4.49871 4.51953 4.55595 4.60676 4.65537 4.66875 4.73422 4.76605 4.83632 4.86482 4.92889 5.01100 5.03942 5.07790 5.13456 5.15776 5.21360 5.22172 5.34131 5.39110 5.39435 5.46421 5.57402 5.58245 5.86772 6.08218 6.30441 6.39767 6.57961 7.10312 7.17872 7.53370 8.08850 8.69035 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.001576 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.398695 B =17766.897794 C =18422.889908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.613 5.613 3 C 0.119 3.881 4 C -0.118 4.118 5 C 0.066 3.934 6 N -0.684 5.684 7 C 0.065 3.935 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.571 5.571 11 C -0.337 4.337 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.274 1.274 19 C 0.510 3.490 20 O -0.589 6.589 21 C -0.106 4.106 22 H 0.127 0.873 23 C -0.110 4.110 24 C -0.112 4.112 25 C -0.070 4.070 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.339 0.661 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.065 0.935 50 H 0.042 0.958 51 H 0.051 0.949 52 H 0.066 0.934 53 H 0.048 0.952 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 -24.249 18.068 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C -0.004 4.004 4 C -0.157 4.157 5 C -0.064 4.064 6 N -0.316 5.316 7 C -0.068 4.068 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.467 4.467 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.199 1.199 19 C 0.300 3.700 20 O -0.469 6.469 21 C -0.127 4.127 22 H 0.145 0.855 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.070 4.070 26 C -0.193 4.193 27 C -0.198 4.198 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.085 0.915 53 H 0.066 0.934 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.485 -24.220 17.418 34.084 hybrid contribution 1.805 0.559 -0.499 1.954 sum -14.680 -23.661 16.919 32.582 Atomic orbital electron populations 1.22214 0.76953 1.05115 1.03076 1.47978 1.08627 1.05327 1.72559 1.21423 0.97888 0.85286 0.95816 1.21743 1.00806 0.95522 0.97621 1.21948 0.99125 0.97153 0.88142 1.60128 1.52587 1.04612 1.14290 1.21552 0.98478 0.94288 0.92453 1.20891 0.82147 0.82593 0.92051 1.90487 1.56000 1.54953 1.49754 1.41922 1.50084 1.20681 1.08181 1.19687 1.35613 1.06654 0.84745 0.90387 1.26058 0.95847 0.95333 1.03944 1.69668 1.38221 1.14496 1.33597 0.84908 0.78196 0.78174 0.76913 1.19475 1.19406 1.19905 1.21233 0.87544 0.86647 0.74592 1.90680 1.16376 1.88100 1.51743 1.22316 0.98083 0.90336 1.01964 0.85497 1.22422 1.00140 0.97660 0.94586 1.22286 0.98660 0.93507 1.00465 1.21236 0.95103 0.94779 0.95880 1.21902 1.00787 0.99288 0.97281 1.21922 0.99651 0.99555 0.98692 1.22354 0.96927 0.93178 1.01000 0.91816 0.88781 0.89157 0.91727 0.87326 0.94505 0.90854 0.88969 0.94972 0.84310 0.87265 0.91852 0.76898 0.91220 0.88279 0.93483 0.89359 0.91613 0.91755 0.93008 0.91641 0.93863 0.92950 0.91513 0.93360 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.99 127.77 1.15 1.68 16 2 N -0.61 -10.18 2.87 -846.74 -2.43 -12.61 16 3 C 0.12 2.17 5.45 86.38 0.47 2.64 16 4 C -0.12 -2.70 5.80 30.60 0.18 -2.52 16 5 C 0.07 1.62 5.69 86.30 0.49 2.11 16 6 N -0.68 -23.26 6.13 -517.92 -3.17 -26.43 16 7 C 0.06 2.33 6.17 85.56 0.53 2.86 16 8 C 0.44 21.62 7.82 87.66 0.69 22.31 16 9 O -0.63 -36.17 15.78 -3.08 -0.05 -36.22 16 10 N -0.57 -30.22 5.29 -306.98 -1.62 -31.84 16 11 C -0.34 -19.66 9.68 84.04 0.81 -18.85 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 14 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 15 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 C 0.51 10.95 7.06 87.66 0.62 11.57 16 20 O -0.59 -18.50 15.33 -3.02 -0.05 -18.54 16 21 C -0.11 -1.48 2.31 -10.25 -0.02 -1.51 16 22 H 0.13 1.08 7.41 -2.38 -0.02 1.06 16 23 C -0.11 -1.27 5.48 31.67 0.17 -1.09 16 24 C -0.11 -1.09 6.11 31.32 0.19 -0.90 16 25 C -0.07 -0.83 0.94 -51.39 -0.05 -0.87 16 26 C -0.14 -1.15 8.13 71.98 0.59 -0.56 16 27 C -0.14 -1.85 8.16 71.98 0.59 -1.26 16 28 C -0.10 -1.61 4.97 31.74 0.16 -1.45 16 29 H 0.06 0.49 7.65 -2.38 -0.02 0.48 16 30 H 0.09 0.34 6.00 -2.39 -0.01 0.33 16 31 H 0.09 0.44 7.89 -2.39 -0.02 0.42 16 32 H 0.06 1.44 7.42 -2.39 -0.02 1.42 16 33 H 0.11 1.32 7.89 -2.39 -0.02 1.30 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.34 12.61 8.43 -89.69 -0.76 11.85 16 39 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 42 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.10 0.65 6.34 -2.39 -0.02 0.63 16 44 H 0.05 0.78 8.04 -2.39 -0.02 0.76 16 45 H 0.09 0.54 7.67 -2.39 -0.02 0.52 16 46 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 47 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 53 H 0.05 1.12 7.20 -2.39 -0.02 1.10 16 54 H 0.07 1.11 7.84 -2.39 -0.02 1.09 16 Total: -1.00 -76.83 426.11 1.41 -75.42 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.60 Total: 40.56 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 7.02 Total: 13.97 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -6.95 Total: -120.81 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.09 Total: -54.76 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.83 1.41 -75.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733125329.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.340 kcal (2) G-P(sol) polarization free energy of solvation -76.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds