Wall clock time and date at job start Sat Apr 11 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99714 * 2 1 4 4 C 1.53000 * 109.46785 * 66.05232 * 3 2 1 5 5 C 1.53001 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46852 * 180.02562 * 5 4 3 7 7 C 1.46505 * 120.00009 * 269.99653 * 6 5 4 8 8 C 1.34778 * 120.00117 * 90.00246 * 6 5 4 9 9 O 1.21284 * 120.00329 * 359.97438 * 8 6 5 10 10 C 1.50700 * 119.99986 * 179.97438 * 8 6 5 11 11 C 1.53781 * 113.61480 * 199.70337 * 10 8 6 12 12 C 1.53956 * 87.02224 * 89.22741 * 11 10 8 13 13 C 1.52994 * 113.53883 * 270.81193 * 12 11 10 14 14 C 1.52997 * 113.74325 * 139.94437 * 12 11 10 15 15 C 1.53781 * 113.61445 * 297.30977 * 10 8 6 16 16 C 1.46903 * 110.99362 * 236.05561 * 2 1 3 17 17 C 1.50707 * 109.46932 * 293.94593 * 16 2 1 18 18 O 1.21283 * 119.99700 * 0.02562 * 17 16 2 19 19 N 1.34774 * 119.99875 * 180.02562 * 17 16 2 20 20 C 1.37099 * 119.99838 * 180.02562 * 19 17 16 21 21 H 1.07989 * 119.99852 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99780 * 180.02562 * 20 19 17 23 23 N 1.31406 * 119.99797 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99847 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47351 * 90.00038 * 24 22 20 26 26 H 1.48506 * 109.46739 * 209.99821 * 24 22 20 27 27 H 1.48502 * 109.47347 * 329.99235 * 24 22 20 28 28 H 1.09004 * 109.47904 * 59.99156 * 1 2 3 29 29 H 1.09001 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46998 * 299.99301 * 1 2 3 31 31 H 1.09000 * 109.47508 * 306.05191 * 3 2 1 32 32 H 1.09007 * 109.46631 * 186.04596 * 3 2 1 33 33 H 1.09000 * 109.47131 * 59.99728 * 4 3 2 34 34 H 1.08998 * 109.47447 * 299.99820 * 4 3 2 35 35 H 1.09000 * 109.47041 * 60.00128 * 5 4 3 36 36 H 1.09007 * 109.46907 * 299.99651 * 5 4 3 37 37 H 1.09002 * 109.47075 * 270.00330 * 7 6 5 38 38 H 1.08996 * 109.46636 * 30.00774 * 7 6 5 39 39 H 1.08998 * 109.46967 * 150.00222 * 7 6 5 40 40 H 1.09002 * 112.85358 * 68.50687 * 10 8 6 41 41 H 1.09004 * 113.61989 * 203.74966 * 11 10 8 42 42 H 1.09001 * 113.61336 * 334.65033 * 11 10 8 43 43 H 1.09002 * 109.47605 * 163.93151 * 13 12 11 44 44 H 1.08999 * 109.47227 * 283.93359 * 13 12 11 45 45 H 1.09009 * 109.47217 * 43.93646 * 13 12 11 46 46 H 1.09010 * 109.47053 * 322.40317 * 14 12 11 47 47 H 1.08998 * 109.47365 * 82.40149 * 14 12 11 48 48 H 1.08999 * 109.47154 * 202.40343 * 14 12 11 49 49 H 1.08999 * 113.61756 * 25.34690 * 15 10 8 50 50 H 1.09002 * 113.61774 * 156.25160 * 15 10 8 51 51 H 1.08993 * 109.47860 * 53.95261 * 16 2 1 52 52 H 1.09005 * 109.46726 * 173.95594 * 16 2 1 53 53 H 0.96998 * 119.99969 * 0.02562 * 19 17 16 54 54 H 0.97004 * 120.00120 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1802 3.4855 1.3187 6 7 1.8323 4.1420 2.5812 7 6 0.5758 4.8864 2.6979 8 6 2.6681 4.0613 3.6355 9 8 3.7081 3.4448 3.5391 10 6 2.3104 4.7371 4.9341 11 6 3.5165 4.9732 5.8584 12 6 3.6966 6.3256 5.1449 13 6 4.5936 6.2492 3.9079 14 6 4.0764 7.4719 6.0844 15 6 2.1944 6.2664 4.8212 16 6 1.9953 -0.7658 -1.1378 17 6 1.6368 -2.2204 -0.9731 18 8 1.0048 -2.5831 -0.0036 19 7 2.0187 -3.1179 -1.9031 20 6 1.6921 -4.4411 -1.7536 21 1 1.1293 -4.7640 -0.8904 22 6 2.0863 -5.3666 -2.7122 23 7 1.7737 -6.6348 -2.5686 24 14 3.0616 -4.8080 -4.2042 25 1 4.5136 -4.8761 -3.9003 26 1 2.7549 -5.6939 -5.3560 27 1 2.6916 -3.4102 -4.5426 28 1 -0.3635 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.5610 1.9274 -0.8308 32 1 3.0797 1.3444 -0.1082 33 1 2.0659 1.5014 2.1492 34 1 0.5472 2.0843 1.4267 35 1 1.7461 4.0417 0.4878 36 1 3.2646 3.4581 1.2106 37 1 0.7415 5.9257 2.4139 38 1 -0.1710 4.4441 2.0386 39 1 0.2222 4.8431 3.7280 40 1 1.4617 4.2707 5.4344 41 1 3.2486 5.0670 6.9108 42 1 4.3383 4.2770 5.6903 43 1 4.4529 7.1437 3.3012 44 1 5.6362 6.1813 4.2188 45 1 4.3309 5.3680 3.3224 46 1 3.5442 7.3590 7.0290 47 1 5.1506 7.4506 6.2678 48 1 3.8049 8.4226 5.6257 49 1 1.9502 6.6128 3.8169 50 1 1.5641 6.7145 5.5894 51 1 1.5610 -0.3870 -2.0629 52 1 3.0796 -0.6610 -1.1758 53 1 2.5245 -2.8278 -2.6783 54 1 2.0485 -7.2809 -3.2380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733771649.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:00 Heat of formation + Delta-G solvation = -64.762040 kcal Electronic energy + Delta-G solvation = -29864.033848 eV Core-core repulsion = 25835.981959 eV Total energy + Delta-G solvation = -4028.051889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03947 -40.53002 -39.22711 -38.17465 -36.73740 -35.92786 -33.77214 -33.31215 -31.68306 -29.58578 -28.34732 -28.18458 -27.38180 -26.69528 -26.48801 -24.97416 -23.28069 -21.81498 -21.26547 -20.29102 -20.12965 -19.15326 -17.93797 -17.81220 -17.23922 -16.95075 -16.80908 -16.60573 -16.29025 -15.79721 -15.61114 -15.28063 -15.07504 -15.05165 -14.83299 -14.69085 -14.33748 -14.24181 -13.95727 -13.72310 -13.60158 -13.41941 -13.25849 -13.11899 -12.91837 -12.83559 -12.77511 -12.64732 -12.51371 -12.46009 -12.42726 -12.34402 -12.04784 -11.97698 -11.71698 -11.52752 -11.47417 -11.01543 -10.92296 -10.70290 -10.37883 -10.23826 -9.64363 -9.18157 -8.41673 -6.02416 1.29280 1.35400 1.43838 1.62841 1.95506 2.01965 2.22643 2.65155 3.14088 3.26337 3.47274 3.55065 3.61387 3.72831 3.92177 4.02635 4.07913 4.15133 4.29749 4.32873 4.35984 4.38667 4.41200 4.50254 4.56009 4.59944 4.61838 4.68554 4.70597 4.73081 4.77791 4.81296 4.87391 4.87795 4.94136 5.01242 5.02907 5.10419 5.16071 5.18125 5.23555 5.27336 5.30420 5.47951 5.52906 5.53183 5.64206 5.90274 6.02918 6.23190 6.40817 6.59946 6.88278 7.21206 7.39624 7.97481 8.76091 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.001728 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.619941 B =16200.420202 C =16406.221177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.063 3.937 4 C -0.118 4.118 5 C 0.121 3.879 6 N -0.614 5.614 7 C 0.070 3.930 8 C 0.528 3.472 9 O -0.581 6.581 10 C -0.142 4.142 11 C -0.121 4.121 12 C -0.093 4.093 13 C -0.142 4.142 14 C -0.131 4.131 15 C -0.104 4.104 16 C 0.055 3.945 17 C 0.450 3.550 18 O -0.607 6.607 19 N -0.592 5.592 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.231 1.231 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.116 0.884 51 H 0.082 0.918 52 H 0.116 0.884 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 37.015 9.019 38.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.065 4.065 4 C -0.157 4.157 5 C -0.003 4.003 6 N -0.345 5.345 7 C -0.071 4.071 8 C 0.317 3.683 9 O -0.461 6.461 10 C -0.163 4.163 11 C -0.159 4.159 12 C -0.093 4.093 13 C -0.199 4.199 14 C -0.188 4.188 15 C -0.141 4.141 16 C -0.076 4.076 17 C 0.238 3.762 18 O -0.491 6.491 19 N -0.234 5.234 20 C -0.458 4.458 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.154 1.154 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.135 0.865 51 H 0.099 0.901 52 H 0.134 0.866 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.540 36.036 9.970 37.393 hybrid contribution 0.282 -0.775 -1.369 1.599 sum 0.822 35.260 8.600 36.303 Atomic orbital electron populations 1.22413 0.86815 1.01962 1.00798 1.61442 1.09045 1.14191 1.42729 1.22082 1.00505 0.86587 0.97308 1.21790 1.01372 0.95447 0.97085 1.21403 1.00935 0.92040 0.85874 1.47938 1.21998 1.52654 1.11937 1.22151 0.84080 0.96585 1.04313 1.20610 0.82671 0.79169 0.85801 1.90692 1.26861 1.44547 1.84004 1.22399 1.01604 0.98794 0.93478 1.23078 0.96746 0.97081 0.98977 1.21891 0.95903 0.95526 0.95987 1.21800 0.99010 1.01908 0.97198 1.21692 1.01258 0.97126 0.98733 1.23139 0.95887 0.91276 1.03835 1.21824 1.02606 0.89282 0.93882 1.20938 0.82930 0.88934 0.83427 1.90511 1.44228 1.81476 1.32850 1.42036 1.51837 1.06800 1.22756 1.18999 1.34855 0.83136 1.08778 0.92798 1.26120 0.98636 0.94644 1.01989 1.69806 1.47224 1.02997 1.37522 0.85356 0.78921 0.80184 0.76994 1.18291 1.19876 1.15397 0.94352 0.93239 0.90623 0.92164 0.90429 0.94444 0.91034 0.87421 0.91596 0.90497 0.89863 0.89708 0.86388 0.87537 0.93097 0.91859 0.93431 0.93004 0.91318 0.93300 0.91669 0.90106 0.86545 0.90071 0.86632 0.77519 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 8.96 127.69 1.14 2.01 16 2 N -0.55 -17.52 4.50 -927.00 -4.17 -21.69 16 3 C 0.06 1.40 4.96 86.30 0.43 1.83 16 4 C -0.12 -2.53 5.46 30.59 0.17 -2.37 16 5 C 0.12 2.01 5.41 86.38 0.47 2.48 16 6 N -0.61 -9.60 2.87 -846.73 -2.43 -12.04 16 7 C 0.07 0.50 9.12 127.77 1.17 1.67 16 8 C 0.53 10.99 5.25 87.66 0.46 11.45 16 9 O -0.58 -17.73 14.03 -3.04 -0.04 -17.77 16 10 C -0.14 -1.97 3.09 -11.01 -0.03 -2.00 16 11 C -0.12 -1.86 6.76 31.18 0.21 -1.65 16 12 C -0.09 -1.18 1.39 -51.60 -0.07 -1.25 16 13 C -0.14 -2.39 8.99 71.98 0.65 -1.75 16 14 C -0.13 -1.20 9.20 71.98 0.66 -0.54 16 15 C -0.10 -0.86 6.04 31.12 0.19 -0.68 16 16 C 0.06 1.79 5.45 85.56 0.47 2.26 16 17 C 0.45 21.16 7.47 87.66 0.66 21.82 16 18 O -0.61 -34.77 13.91 -3.04 -0.04 -34.81 16 19 N -0.59 -28.81 5.09 -306.99 -1.56 -30.37 16 20 C -0.33 -19.72 10.16 84.04 0.85 -18.86 16 21 H 0.05 3.85 7.39 -2.92 -0.02 3.83 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 23 N -0.93 -57.30 13.96 21.66 0.30 -57.00 16 24 Si 0.97 39.52 27.74 68.60 1.90 41.42 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 2.01 5.82 -2.39 -0.01 1.99 16 30 H 0.08 2.07 6.47 -2.38 -0.02 2.05 16 31 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.08 1.70 7.93 -2.38 -0.02 1.68 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.41 6.55 -2.39 -0.02 1.40 16 35 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.07 1.38 7.42 -2.38 -0.02 1.36 16 37 H 0.08 0.29 7.12 -2.39 -0.02 0.27 16 38 H 0.08 0.46 8.07 -2.39 -0.02 0.44 16 39 H 0.08 0.43 6.51 -2.39 -0.02 0.42 16 40 H 0.12 1.28 7.89 -2.39 -0.02 1.26 16 41 H 0.11 1.18 7.98 -2.38 -0.02 1.16 16 42 H 0.05 1.13 7.31 -2.39 -0.02 1.11 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.14 4.17 -2.38 -0.01 1.13 16 46 H 0.07 0.47 7.96 -2.38 -0.02 0.45 16 47 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 0.59 6.13 -2.39 -0.01 0.58 16 50 H 0.12 0.44 8.10 -2.39 -0.02 0.42 16 51 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 52 H 0.12 3.18 7.93 -2.38 -0.02 3.16 16 53 H 0.39 15.65 5.76 -92.71 -0.53 15.12 16 54 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -85.78 414.03 2.12 -83.66 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.29 Total: 34.58 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.88 Total: 14.02 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -7.87 Total: -121.10 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.08 Total: -52.58 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Total: -85.78 2.12 -83.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733771649.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.895 kcal (2) G-P(sol) polarization free energy of solvation -85.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds