Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47127 * 300.00088 * 3 2 1 6 6 H 1.48494 * 109.47293 * 60.00233 * 3 2 1 7 7 C 1.38811 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99721 * 191.03551 * 7 2 1 9 9 N 1.36939 * 120.00267 * 11.02976 * 7 2 1 10 10 C 1.46925 * 120.62790 * 31.72489 * 9 7 2 11 11 C 1.53190 * 108.77671 * 126.36864 * 10 9 7 12 12 C 1.53049 * 109.31210 * 54.63332 * 11 10 9 13 13 C 1.52999 * 109.45934 * 178.63028 * 12 11 10 14 14 O 1.42901 * 109.47036 * 180.75345 * 13 12 11 15 15 N 1.46493 * 109.45879 * 58.65273 * 12 11 10 16 16 C 1.34781 * 120.00018 * 62.66768 * 15 12 11 17 17 O 1.21284 * 119.99649 * 354.88280 * 16 15 12 18 18 C 1.50697 * 120.00341 * 174.88529 * 16 15 12 19 19 C 1.53001 * 109.47237 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47042 * 179.97438 * 19 18 16 21 21 N 1.46897 * 109.46894 * 180.02562 * 20 19 18 22 22 C 1.48530 * 111.00293 * 52.60727 * 21 20 19 23 23 C 1.54931 * 103.22754 * 159.72316 * 22 21 20 24 24 C 1.54599 * 102.92047 * 322.57678 * 23 22 21 25 25 C 1.47905 * 110.99739 * 170.00220 * 21 20 19 26 26 C 1.53038 * 109.53466 * 298.63412 * 12 11 10 27 27 C 1.46921 * 120.62844 * 211.69930 * 9 7 2 28 28 H 0.96998 * 120.00232 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58431 * 6.57771 * 10 9 7 30 30 H 1.09001 * 109.69815 * 246.22220 * 10 9 7 31 31 H 1.09006 * 109.49524 * 294.68362 * 11 10 9 32 32 H 1.09003 * 109.49962 * 174.58413 * 11 10 9 33 33 H 1.09001 * 109.47156 * 300.75801 * 13 12 11 34 34 H 1.09001 * 109.47292 * 60.75372 * 13 12 11 35 35 H 0.96695 * 113.99805 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00553 * 242.65633 * 15 12 11 37 37 H 1.08997 * 109.47060 * 59.99515 * 18 16 15 38 38 H 1.09006 * 109.47036 * 299.99720 * 18 16 15 39 39 H 1.08997 * 109.46548 * 60.00297 * 19 18 16 40 40 H 1.08997 * 109.47145 * 299.99754 * 19 18 16 41 41 H 1.09006 * 109.47204 * 300.00043 * 20 19 18 42 42 H 1.08997 * 109.47087 * 59.99958 * 20 19 18 43 43 H 1.09001 * 110.66438 * 278.15230 * 22 21 20 44 44 H 1.08995 * 110.66766 * 41.27840 * 22 21 20 45 45 H 1.09000 * 110.72186 * 204.22452 * 23 22 21 46 46 H 1.08997 * 110.73258 * 80.94154 * 23 22 21 47 47 H 1.08996 * 110.31274 * 263.04580 * 24 23 22 48 48 H 1.09006 * 110.39080 * 140.91891 * 24 23 22 49 49 H 1.09005 * 109.91900 * 333.50646 * 25 21 20 50 50 H 1.09001 * 109.92008 * 94.60401 * 25 21 20 51 51 H 1.09004 * 109.49770 * 181.31644 * 26 12 11 52 52 H 1.09001 * 109.50337 * 301.41154 * 26 12 11 53 53 H 1.08999 * 109.59088 * 353.41840 * 27 9 7 54 54 H 1.09002 * 109.58686 * 113.84601 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0754 -1.2108 0.1785 9 7 1.3447 -2.3770 -0.2279 10 6 0.1682 -2.4127 -1.1074 11 6 0.3868 -3.4843 -2.1801 12 6 0.7069 -4.8195 -1.5039 13 6 0.8923 -5.8999 -2.5713 14 8 1.1738 -7.1503 -1.9395 15 7 -0.3969 -5.1942 -0.6166 16 6 -1.6230 -5.4245 -1.1266 17 8 -1.8356 -5.2319 -2.3050 18 6 -2.7299 -5.9212 -0.2327 19 6 -4.0082 -6.0988 -1.0543 20 6 -5.1318 -6.6037 -0.1468 21 7 -6.3590 -6.7748 -0.9359 22 6 -6.1087 -7.6167 -2.1337 23 6 -7.5243 -8.1141 -2.5195 24 6 -8.1935 -8.3513 -1.1462 25 6 -7.3966 -7.4829 -0.1552 26 6 1.9941 -4.6839 -0.6873 27 6 1.7937 -3.6259 0.4024 28 1 -0.4850 0.8400 0.0004 29 1 0.0380 -1.4407 -1.5830 30 1 -0.7196 -2.6559 -0.5237 31 1 1.2186 -3.1926 -2.8215 32 1 -0.5171 -3.5880 -2.7803 33 1 -0.0200 -5.9881 -3.1613 34 1 1.7219 -5.6275 -3.2238 35 1 1.3029 -7.8828 -2.5574 36 1 -0.2454 -5.2767 0.3379 37 1 -2.9071 -5.1972 0.5626 38 1 -2.4425 -6.8777 0.2042 39 1 -3.8311 -6.8227 -1.8498 40 1 -4.2954 -5.1422 -1.4908 41 1 -4.8443 -7.5605 0.2893 42 1 -5.3089 -5.8803 0.6489 43 1 -5.6774 -7.0216 -2.9387 44 1 -5.4601 -8.4566 -1.8849 45 1 -7.4655 -9.0438 -3.0855 46 1 -8.0610 -7.3513 -3.0835 47 1 -8.1244 -9.4029 -0.8682 48 1 -9.2365 -8.0353 -1.1723 49 1 -6.9274 -8.1152 0.5986 50 1 -8.0572 -6.7610 0.3250 51 1 2.2341 -5.6414 -0.2249 52 1 2.8107 -4.3810 -1.3426 53 1 2.7359 -3.4543 0.9229 54 1 1.0398 -3.9692 1.1109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733916905.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -91.090220 kcal Electronic energy + Delta-G solvation = -31227.367357 eV Core-core repulsion = 27198.173792 eV Total energy + Delta-G solvation = -4029.193565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50501 -39.95114 -38.97932 -37.43295 -35.64972 -35.25230 -33.64999 -32.43832 -31.62251 -31.28846 -29.79007 -28.39877 -27.02663 -25.65464 -23.99076 -23.66731 -22.59747 -21.80248 -21.59698 -20.97940 -20.13837 -18.84906 -18.26791 -17.91736 -17.11773 -16.91242 -16.74920 -16.58385 -16.37661 -15.86924 -15.53724 -15.23788 -15.17019 -14.93545 -14.85726 -14.53587 -14.34919 -14.11823 -13.84580 -13.63914 -13.37078 -13.25351 -13.18320 -12.98857 -12.71874 -12.64578 -12.48240 -12.34048 -12.22484 -12.19450 -12.09448 -12.01675 -11.95569 -11.83627 -11.61676 -11.41958 -11.40110 -11.28432 -11.02216 -10.56403 -10.32012 -9.85886 -9.35331 -8.61173 -7.86166 -5.37526 1.45099 1.46931 1.57111 1.81620 2.31668 2.50325 3.06556 3.26741 3.33031 3.66021 3.72267 3.76617 3.82051 3.98244 4.01274 4.04772 4.08637 4.21633 4.27331 4.35668 4.47222 4.48805 4.51881 4.55357 4.61813 4.64753 4.69831 4.72451 4.75199 4.76869 4.80129 4.92396 4.97927 4.99091 5.03985 5.07293 5.13930 5.17904 5.19310 5.24932 5.30177 5.32437 5.34585 5.47317 5.64279 5.69949 5.78276 5.97366 6.11557 6.41366 6.74449 6.89446 7.15955 7.42486 7.85896 8.39165 9.19242 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.002595 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.713333 B =10785.834217 C =12129.248102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.198 3.802 11 C -0.139 4.139 12 C 0.195 3.805 13 C 0.076 3.924 14 O -0.572 6.572 15 N -0.701 5.701 16 C 0.511 3.489 17 O -0.579 6.579 18 C -0.132 4.132 19 C -0.090 4.090 20 C 0.053 3.947 21 N -0.539 5.539 22 C 0.032 3.968 23 C -0.123 4.123 24 C -0.128 4.128 25 C 0.031 3.969 26 C -0.118 4.118 27 C 0.142 3.858 28 H 0.248 0.752 29 H 0.043 0.957 30 H -0.004 1.004 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.392 0.608 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.068 0.932 53 H 0.059 0.941 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -21.434 -1.334 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.072 3.928 11 C -0.179 4.179 12 C 0.108 3.892 13 C -0.003 4.003 14 O -0.379 6.379 15 N -0.352 5.352 16 C 0.300 3.700 17 O -0.459 6.459 18 C -0.172 4.172 19 C -0.129 4.129 20 C -0.075 4.075 21 N -0.264 5.264 22 C -0.096 4.096 23 C -0.162 4.162 24 C -0.166 4.166 25 C -0.096 4.096 26 C -0.157 4.157 27 C 0.016 3.984 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.241 0.759 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.077 0.923 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.543 -20.293 -1.739 22.492 hybrid contribution 0.708 0.428 0.070 0.830 sum -8.835 -19.865 -1.669 21.805 Atomic orbital electron populations 1.70162 1.06696 1.25578 1.55653 1.25932 0.96126 1.01604 1.00955 0.85206 0.78706 0.79904 0.76631 1.18835 1.22083 1.21833 1.19535 0.91289 0.85151 1.43090 0.91483 1.44252 1.32582 1.04289 1.52007 1.20265 0.87541 0.95555 0.89455 1.22360 1.01093 0.95478 0.99013 1.20134 0.87072 0.91807 0.90183 1.22422 0.99576 0.84128 0.94177 1.86395 1.94211 1.18789 1.38537 1.45913 1.08800 1.69273 1.11222 1.21094 0.83841 0.76288 0.88811 1.90588 1.82813 1.53732 1.18816 1.21614 0.92784 1.04176 0.98607 1.21202 0.92470 1.01524 0.97664 1.22265 0.88900 1.00507 0.95803 1.64758 1.08692 1.45762 1.07183 1.23241 0.97695 0.95237 0.93429 1.22500 0.94627 1.01578 0.97448 1.22402 1.00007 0.99964 0.94187 1.22944 0.94250 0.96360 0.96071 1.22076 0.95336 0.99740 0.98531 1.21069 0.97780 0.86113 0.93418 0.94306 0.93858 0.98632 0.92513 0.91977 0.93158 0.92519 0.75955 0.75907 0.88156 0.86499 0.91991 0.93242 0.93268 0.90365 0.91266 0.93413 0.89701 0.91292 0.90373 0.90296 0.93135 0.90482 0.89230 0.91347 0.92269 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 11.10 21.65 0.24 -56.03 16 2 C -0.05 -2.86 5.04 84.86 0.43 -2.44 16 3 Si 0.97 45.37 29.57 68.60 2.03 47.40 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.26 -14.28 9.57 84.03 0.80 -13.47 16 8 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 9 N -0.61 -30.26 2.98 -699.10 -2.09 -32.35 16 10 C 0.20 9.93 4.99 86.36 0.43 10.36 16 11 C -0.14 -5.77 4.71 30.67 0.14 -5.63 16 12 C 0.19 6.52 0.44 3.63 0.00 6.52 16 13 C 0.08 2.19 5.68 71.98 0.41 2.59 16 14 O -0.57 -13.79 12.84 -148.98 -1.91 -15.70 16 15 N -0.70 -21.90 3.98 -422.80 -1.68 -23.58 16 16 C 0.51 16.22 7.24 87.66 0.63 16.85 16 17 O -0.58 -22.10 12.23 -3.04 -0.04 -22.14 16 18 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 19 C -0.09 -2.18 4.16 30.59 0.13 -2.05 16 20 C 0.05 1.05 5.03 86.30 0.43 1.49 16 21 N -0.54 -11.15 5.40 -883.03 -4.76 -15.92 16 22 C 0.03 0.60 5.10 86.65 0.44 1.04 16 23 C -0.12 -1.81 7.06 31.80 0.22 -1.59 16 24 C -0.13 -1.64 6.93 31.47 0.22 -1.42 16 25 C 0.03 0.50 6.69 86.45 0.58 1.08 16 26 C -0.12 -3.82 4.85 30.67 0.15 -3.67 16 27 C 0.14 5.57 6.24 86.37 0.54 6.11 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.04 2.52 6.14 -2.39 -0.01 2.51 16 30 H 0.00 -0.24 7.74 -2.39 -0.02 -0.26 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.06 2.71 6.23 -2.39 -0.01 2.69 16 33 H 0.05 1.63 6.17 -2.39 -0.01 1.61 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.39 5.84 9.12 -74.06 -0.68 5.16 16 36 H 0.41 11.43 7.19 -92.71 -0.67 10.76 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.06 1.56 6.75 -2.39 -0.02 1.55 16 40 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.05 0.82 7.81 -2.38 -0.02 0.81 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 44 H 0.05 0.85 8.00 -2.39 -0.02 0.83 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.05 0.73 7.57 -2.38 -0.02 0.71 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.09 2.52 7.66 -2.39 -0.02 2.50 16 52 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 53 H 0.06 2.27 7.93 -2.39 -0.02 2.26 16 54 H 0.02 0.85 6.89 -2.39 -0.02 0.83 16 Total: -1.00 -70.65 405.55 -2.93 -73.58 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.45 Total: 31.84 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.73 Total: 12.89 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -8.29 Total: -127.87 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.95 Total: -37.84 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.65 -2.93 -73.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733916905.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.509 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds