Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46816 * 2 1 4 4 C 1.53006 * 109.46966 * 119.99392 * 2 1 3 5 5 N 1.46490 * 109.47559 * 299.78485 * 4 2 1 6 6 C 1.34775 * 120.00418 * 154.99593 * 5 4 2 7 7 O 1.21354 * 119.99505 * 0.02562 * 6 5 4 8 8 C 1.49442 * 120.00454 * 179.97438 * 6 5 4 9 9 O 1.21345 * 120.00257 * 353.86790 * 8 6 5 10 10 N 1.34776 * 120.00262 * 174.13996 * 8 6 5 11 11 C 1.47080 * 120.88296 * 181.18814 * 10 8 6 12 12 C 1.53695 * 108.28009 * 128.75614 * 11 10 8 13 13 N 1.46902 * 109.25537 * 54.07885 * 12 11 10 14 14 C 1.46907 * 110.99777 * 172.61240 * 13 12 11 15 15 C 1.50705 * 109.46888 * 294.30006 * 14 13 12 16 16 H 1.07996 * 119.99772 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99673 * 180.02562 * 15 14 13 18 18 N 1.31525 * 119.99666 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00453 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46966 * 90.00089 * 19 17 15 21 21 H 1.48499 * 109.47466 * 209.99951 * 19 17 15 22 22 H 1.48506 * 109.46972 * 330.00341 * 19 17 15 23 23 C 1.46897 * 111.27103 * 296.75480 * 13 12 11 24 24 C 1.47081 * 120.88116 * 1.46250 * 10 8 6 25 25 C 1.53001 * 109.46870 * 179.78314 * 4 2 1 26 26 C 1.53006 * 109.46884 * 177.23565 * 25 4 2 27 27 C 1.53000 * 109.47409 * 297.23332 * 25 4 2 28 28 H 1.09002 * 109.47669 * 305.06623 * 1 2 3 29 29 H 1.09004 * 109.47071 * 65.06890 * 1 2 3 30 30 H 1.09003 * 109.46634 * 185.06454 * 1 2 3 31 31 H 1.08993 * 109.47653 * 239.99683 * 2 1 3 32 32 H 1.09001 * 109.47145 * 60.00062 * 3 2 1 33 33 H 1.09005 * 109.46800 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46908 * 299.99476 * 3 2 1 35 35 H 1.08998 * 109.46815 * 59.78962 * 4 2 1 36 36 H 0.97004 * 120.00137 * 335.00699 * 5 4 2 37 37 H 1.09003 * 109.62560 * 248.52067 * 11 10 8 38 38 H 1.08992 * 109.62879 * 9.10319 * 11 10 8 39 39 H 1.08998 * 109.64596 * 294.08242 * 12 11 10 40 40 H 1.08996 * 109.42491 * 173.94702 * 12 11 10 41 41 H 1.09000 * 109.47160 * 54.30210 * 14 13 12 42 42 H 1.08994 * 109.46812 * 174.30182 * 14 13 12 43 43 H 0.96995 * 119.99796 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.49692 * 303.15083 * 23 13 12 45 45 H 1.09000 * 109.49707 * 183.06007 * 23 13 12 46 46 H 1.09008 * 109.62814 * 350.89594 * 24 10 8 47 47 H 1.09001 * 109.62739 * 111.47464 * 24 10 8 48 48 H 1.09000 * 109.47248 * 57.23503 * 25 4 2 49 49 H 1.08997 * 109.46904 * 60.00314 * 26 25 4 50 50 H 1.09000 * 109.46898 * 180.02562 * 26 25 4 51 51 H 1.08998 * 109.47343 * 300.00133 * 26 25 4 52 52 H 1.08998 * 109.47044 * 65.33443 * 27 25 4 53 53 H 1.09001 * 109.47221 * 185.33479 * 27 25 4 54 54 H 1.09003 * 109.47322 * 305.33740 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.5559 -0.0275 2.4454 6 6 1.4271 -0.6979 3.6075 7 8 1.7126 -1.8761 3.6631 8 6 0.9339 0.0098 4.8278 9 8 0.7554 1.2098 4.8028 10 7 0.6925 -0.6839 5.9579 11 6 0.1821 -0.0112 7.1622 12 6 -1.0535 -0.7799 7.6566 13 7 -0.7034 -2.1951 7.8375 14 6 -1.8031 -2.9322 8.4743 15 6 -2.0029 -2.4223 9.8783 16 1 -1.3760 -1.6297 10.2592 17 6 -2.9860 -2.9678 10.6763 18 7 -3.1607 -2.5225 11.9015 19 14 -4.0707 -4.3382 10.0172 20 1 -3.4459 -5.6516 10.3168 21 1 -5.4061 -4.2666 10.6628 22 1 -4.2225 -4.1860 8.5477 23 6 -0.3218 -2.8168 6.5625 24 6 0.9382 -2.1326 6.0214 25 6 3.5700 -0.7259 1.2466 26 6 4.0802 -1.3859 2.5292 27 6 4.0755 -1.5098 0.0338 28 1 -0.3634 0.5904 0.8411 29 1 -0.3633 0.4332 -0.9319 30 1 -0.3633 -1.0237 0.0907 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6735 -1.7477 1.2513 36 1 1.3280 0.9143 2.4011 37 1 0.9507 -0.0114 7.9351 38 1 -0.0961 1.0141 6.9187 39 1 -1.8557 -0.6946 6.9236 40 1 -1.3835 -0.3624 8.6078 41 1 -2.7185 -2.7860 7.9009 42 1 -1.5590 -3.9940 8.5046 43 1 -3.8525 -2.9059 12.4628 44 1 -1.1341 -2.7030 5.8447 45 1 -0.1209 -3.8765 6.7202 46 1 1.1600 -2.5105 5.0232 47 1 1.7780 -2.3328 6.6868 48 1 3.9364 0.2994 1.1950 49 1 3.7138 -2.4111 2.5808 50 1 5.1702 -1.3888 2.5275 51 1 3.7201 -0.8275 3.3933 52 1 3.7922 -0.9876 -0.8801 53 1 5.1611 -1.5942 0.0825 54 1 3.6331 -2.5060 0.0350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602254149.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -73.817329 kcal Electronic energy + Delta-G solvation = -31428.929625 eV Core-core repulsion = 27400.485069 eV Total energy + Delta-G solvation = -4028.444556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.24972 -40.57442 -39.09237 -38.68112 -36.12995 -34.69326 -34.48109 -33.98954 -32.19049 -30.68150 -28.24068 -28.12917 -27.88813 -27.17918 -25.41610 -24.33030 -23.25035 -22.08557 -21.89193 -20.93928 -20.14291 -19.10029 -18.61047 -18.20605 -17.36221 -17.17637 -16.51982 -16.20650 -16.13968 -16.05482 -15.75244 -15.64825 -15.42932 -15.23203 -15.00806 -14.66704 -14.46620 -14.29162 -13.92642 -13.75003 -13.60300 -13.32062 -13.23106 -13.10709 -12.95372 -12.89498 -12.77722 -12.53482 -12.44285 -12.28930 -12.17279 -12.16758 -12.00630 -11.93892 -11.85060 -11.66057 -11.50538 -11.45093 -11.28312 -10.79146 -10.28361 -10.05905 -9.91240 -9.10528 -8.29028 -6.32593 0.28808 1.22876 1.34580 1.35574 1.45935 2.06832 2.33418 2.39072 3.03177 3.14951 3.21930 3.60298 3.80835 3.90426 3.98145 3.99724 4.11234 4.16793 4.24724 4.29796 4.36058 4.39478 4.50861 4.58758 4.63374 4.71942 4.74641 4.76633 4.80495 4.86087 4.86438 4.91626 4.94830 4.98778 5.01997 5.05679 5.09197 5.10287 5.16926 5.20845 5.28253 5.34315 5.40470 5.46000 5.49705 5.50469 5.60638 5.86350 6.00150 6.20267 6.26476 6.58836 6.63712 6.73370 6.90661 7.30996 8.87204 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002388 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.318581 B =11724.900062 C =11789.660202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.154 4.154 4 C 0.150 3.850 5 N -0.678 5.678 6 C 0.518 3.482 7 O -0.513 6.513 8 C 0.499 3.501 9 O -0.551 6.551 10 N -0.576 5.576 11 C 0.121 3.879 12 C 0.058 3.942 13 N -0.541 5.541 14 C 0.172 3.828 15 C -0.516 4.516 16 H 0.042 0.958 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.946 3.054 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.254 1.254 23 C 0.040 3.960 24 C 0.069 3.931 25 C -0.105 4.105 26 C -0.140 4.140 27 C -0.142 4.142 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.022 0.978 40 H 0.077 0.923 41 H -0.015 1.015 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.025 0.975 45 H 0.094 0.906 46 H 0.166 0.834 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.030 0.970 52 H 0.073 0.927 53 H 0.060 0.940 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.372 4.211 -30.352 33.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.212 4.212 4 C 0.046 3.954 5 N -0.330 5.330 6 C 0.299 3.701 7 O -0.391 6.391 8 C 0.282 3.718 9 O -0.430 6.430 10 N -0.308 5.308 11 C -0.001 4.001 12 C -0.071 4.071 13 N -0.266 5.266 14 C 0.045 3.955 15 C -0.555 4.555 16 H 0.060 0.940 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.178 1.178 23 C -0.089 4.089 24 C -0.051 4.051 25 C -0.124 4.124 26 C -0.198 4.198 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.095 0.905 41 H 0.002 0.998 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.112 0.888 46 H 0.181 0.819 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.049 0.951 52 H 0.092 0.908 53 H 0.079 0.921 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.777 3.968 -29.879 33.141 hybrid contribution -1.657 0.007 0.516 1.736 sum 12.120 3.975 -29.363 32.014 Atomic orbital electron populations 1.21872 0.94999 1.01759 1.02228 1.21447 0.95920 0.97286 0.96898 1.21955 1.01943 0.95001 1.02272 1.21448 0.93963 0.96975 0.82965 1.45921 1.63861 1.14962 1.08301 1.19775 0.78841 0.86775 0.84688 1.90332 1.49874 1.15676 1.83210 1.20418 0.79457 0.87067 0.84864 1.90716 1.53213 1.14750 1.84347 1.48217 1.61114 1.10635 1.10855 1.21918 0.95839 0.96670 0.85716 1.22327 0.95212 0.89430 1.00165 1.61859 1.40080 1.02158 1.22503 1.19946 0.88020 0.94353 0.93184 1.21233 1.16679 1.20147 0.97394 0.93983 1.25820 0.98636 0.99537 0.94850 1.70046 1.34703 1.44598 1.09313 0.85730 0.78136 0.79693 0.79456 1.18823 1.20827 1.17822 1.22576 0.96869 0.99926 0.89522 1.23404 0.96679 0.77179 1.07867 1.21581 0.93734 1.00999 0.96092 1.21875 1.00384 1.00803 0.96698 1.21819 1.01366 1.00039 0.96739 0.93620 0.91150 0.93037 0.87452 0.93340 0.91262 0.91156 0.89758 0.74723 0.90006 0.88434 0.95965 0.90490 0.99758 0.94863 0.92414 0.95673 0.88796 0.81858 0.90692 0.89963 0.92635 0.92656 0.95116 0.90769 0.92052 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.96 71.98 0.65 -0.96 16 2 C -0.10 -0.84 2.49 -10.79 -0.03 -0.86 16 3 C -0.15 -1.18 8.68 71.98 0.62 -0.56 16 4 C 0.15 1.95 1.57 45.00 0.07 2.02 16 5 N -0.68 -11.66 4.22 -443.88 -1.87 -13.54 16 6 C 0.52 12.03 6.07 87.27 0.53 12.55 16 7 O -0.51 -12.63 10.15 -3.26 -0.03 -12.66 16 8 C 0.50 14.19 7.77 87.27 0.68 14.87 16 9 O -0.55 -17.38 15.95 -3.23 -0.05 -17.43 16 10 N -0.58 -17.45 3.00 -818.62 -2.46 -19.91 16 11 C 0.12 3.96 6.62 86.50 0.57 4.54 16 12 C 0.06 2.25 5.47 86.54 0.47 2.73 16 13 N -0.54 -22.44 4.62 -898.86 -4.15 -26.59 16 14 C 0.17 8.24 3.79 85.56 0.32 8.57 16 15 C -0.52 -29.68 8.96 25.60 0.23 -29.45 16 16 H 0.04 2.68 7.37 -2.91 -0.02 2.66 16 17 C 0.01 0.53 5.47 84.65 0.46 0.99 16 18 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 19 Si 0.95 44.02 27.47 68.60 1.88 45.91 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 23 C 0.04 1.32 5.62 86.39 0.49 1.80 16 24 C 0.07 2.00 6.36 86.35 0.55 2.55 16 25 C -0.10 -1.26 2.41 -10.79 -0.03 -1.29 16 26 C -0.14 -2.39 7.69 71.98 0.55 -1.84 16 27 C -0.14 -1.21 8.76 71.98 0.63 -0.58 16 28 H 0.04 0.60 7.63 -2.39 -0.02 0.58 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.62 6.61 -2.39 -0.02 0.60 16 32 H 0.05 0.46 6.49 -2.39 -0.02 0.44 16 33 H 0.07 0.46 6.37 -2.38 -0.02 0.45 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 1.32 7.58 -2.39 -0.02 1.31 16 36 H 0.41 6.73 6.16 -92.70 -0.57 6.16 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.10 3.07 7.07 -2.39 -0.02 3.05 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 41 H -0.02 -0.74 7.18 -2.39 -0.02 -0.76 16 42 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 2.89 7.99 -2.39 -0.02 2.87 16 46 H 0.17 4.39 3.91 -76.04 -0.30 4.10 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.08 0.91 6.29 -2.39 -0.02 0.89 16 49 H 0.05 1.08 7.34 -2.39 -0.02 1.06 16 50 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.03 0.63 5.85 -2.39 -0.01 0.62 16 52 H 0.07 0.40 6.77 -2.39 -0.02 0.38 16 53 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 54 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -67.97 401.22 0.37 -67.60 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.02 Total: 20.25 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.78 Total: 15.08 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -8.19 Total: -118.74 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.08 Total: -30.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -67.97 0.37 -67.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602254149.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.221 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds