Wall clock time and date at job start Sat Apr 11 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47463 * 2 1 4 4 C 1.52995 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47087 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47108 * 179.97438 * 6 5 4 8 8 C 1.53009 * 110.53343 * 66.37471 * 7 6 5 9 9 N 1.47309 * 110.60055 * 303.54736 * 7 6 5 10 10 C 1.34529 * 106.62013 * 241.31607 * 9 7 6 11 11 O 1.21537 * 123.77259 * 180.02562 * 10 9 7 12 12 N 1.33786 * 112.45614 * 0.02562 * 10 9 7 13 13 C 1.46504 * 124.17816 * 179.97438 * 12 10 9 14 14 N 1.46901 * 109.47271 * 270.02663 * 13 12 10 15 15 C 1.46900 * 110.99649 * 278.75037 * 14 13 12 16 16 C 1.46897 * 111.00095 * 154.79906 * 14 13 12 17 17 H 1.09004 * 109.47156 * 171.45933 * 16 14 13 18 18 C 1.52995 * 109.47108 * 51.45101 * 16 14 13 19 19 C 1.50709 * 109.46705 * 291.45324 * 16 14 13 20 20 H 1.07992 * 120.00266 * 359.97438 * 19 16 14 21 21 C 1.37873 * 119.99569 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00533 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99813 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47358 * 89.99705 * 23 21 19 25 25 H 1.48504 * 109.46906 * 209.99712 * 23 21 19 26 26 H 1.48504 * 109.47122 * 329.99563 * 23 21 19 27 27 C 1.34764 * 111.64383 * 359.97438 * 12 10 9 28 28 O 1.21240 * 127.15429 * 180.02562 * 27 12 10 29 29 H 1.08995 * 109.46824 * 59.99442 * 1 2 3 30 30 H 1.08991 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46893 * 300.00186 * 1 2 3 32 32 H 1.09004 * 109.46893 * 239.99814 * 2 1 3 33 33 H 1.09005 * 109.46744 * 120.00447 * 2 1 3 34 34 H 1.09009 * 109.46984 * 60.00404 * 3 2 1 35 35 H 1.08997 * 109.47307 * 300.00593 * 3 2 1 36 36 H 1.08997 * 109.47258 * 60.00270 * 4 3 2 37 37 H 1.09005 * 109.47433 * 299.99767 * 4 3 2 38 38 H 1.08997 * 109.47270 * 59.99780 * 5 4 3 39 39 H 1.09003 * 109.46650 * 299.99419 * 5 4 3 40 40 H 1.09002 * 109.47095 * 60.00142 * 6 5 4 41 41 H 1.08995 * 109.46899 * 299.99889 * 6 5 4 42 42 H 1.08992 * 109.47056 * 297.86932 * 8 7 6 43 43 H 1.09003 * 109.46619 * 57.87294 * 8 7 6 44 44 H 1.08997 * 109.46705 * 177.87351 * 8 7 6 45 45 H 0.97006 * 126.69119 * 61.05581 * 9 7 6 46 46 H 1.09000 * 109.46638 * 30.02285 * 13 12 10 47 47 H 1.09001 * 109.47028 * 150.02187 * 13 12 10 48 48 H 1.09003 * 109.47274 * 60.00216 * 15 14 13 49 49 H 1.09004 * 109.47101 * 180.02562 * 15 14 13 50 50 H 1.08999 * 109.47105 * 299.99870 * 15 14 13 51 51 H 1.09006 * 109.46891 * 173.73991 * 18 16 14 52 52 H 1.08994 * 109.47558 * 293.73784 * 18 16 14 53 53 H 1.09003 * 109.47211 * 53.74707 * 18 16 14 54 54 H 0.96998 * 120.00609 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.6102 2.8847 -0.0013 7 6 6.1203 4.3272 -0.0013 8 6 5.7589 5.0242 1.3120 9 7 5.5737 5.0702 -1.1498 10 6 6.6256 5.4562 -1.8943 11 8 6.5270 6.0957 -2.9231 12 7 7.7926 5.0573 -1.3756 13 6 9.0990 5.3370 -1.9768 14 7 9.4545 4.2529 -2.9021 15 6 10.0107 3.1030 -2.1767 16 6 10.3873 4.7258 -3.9336 17 1 10.7516 3.8762 -4.5112 18 6 11.5685 5.4338 -3.2671 19 6 9.6768 5.6885 -4.8500 20 1 8.6363 5.9248 -4.6831 21 6 10.3548 6.2665 -5.9022 22 7 11.6217 5.9783 -6.1058 23 14 9.4744 7.4602 -7.0377 24 1 9.6174 8.8413 -6.5110 25 1 10.0715 7.3838 -8.3952 26 1 8.0344 7.1044 -7.1095 27 6 7.6179 4.3664 -0.2318 28 8 8.4795 3.8780 0.4675 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8901 35 1 1.6768 1.9563 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9338 0.9284 0.8891 38 1 3.7172 3.3982 0.8904 39 1 3.7165 3.3991 -0.8896 40 1 5.9728 2.3716 -0.8920 41 1 5.9742 2.3703 0.8880 42 1 4.6747 5.0657 1.4150 43 1 6.1823 4.4668 2.1476 44 1 6.1625 6.0367 1.3089 45 1 4.6375 5.2438 -1.3354 46 1 9.0536 6.2798 -2.5220 47 1 9.8525 5.4070 -1.1923 48 1 9.2723 2.7290 -1.4674 49 1 10.2658 2.3151 -2.8854 50 1 10.9072 3.4116 -1.6390 51 1 12.3135 5.6863 -4.0217 52 1 11.2193 6.3453 -2.7822 53 1 12.0146 4.7741 -2.5228 54 1 12.0989 6.3852 -6.8458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738042902.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:20 Heat of formation + Delta-G solvation = -80.448297 kcal Electronic energy + Delta-G solvation = -31306.648842 eV Core-core repulsion = 27277.916746 eV Total energy + Delta-G solvation = -4028.732096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.54386 -39.66392 -39.24533 -38.07286 -36.98266 -35.96921 -34.65276 -33.68275 -31.68714 -30.79326 -29.05611 -28.56748 -27.31928 -26.23968 -25.34655 -24.63936 -23.09806 -21.98393 -21.71158 -21.37984 -20.83461 -18.95990 -18.51232 -17.83054 -17.35136 -16.90254 -16.80989 -16.62368 -16.57515 -15.80500 -15.69254 -15.48908 -15.25283 -15.04393 -14.88889 -14.69115 -14.26627 -14.09019 -13.81642 -13.76682 -13.50227 -13.37652 -13.25444 -13.20132 -12.88348 -12.79074 -12.73582 -12.63154 -12.41795 -12.27187 -12.21152 -12.16046 -12.00536 -11.83474 -11.69247 -11.53822 -11.45093 -11.26030 -11.13142 -10.94824 -10.85572 -10.51217 -10.39583 -9.14766 -8.13146 -6.21514 0.60833 1.21493 1.39070 1.39883 1.53374 2.03511 2.20725 2.42856 2.90246 3.15891 3.30961 3.45675 3.69027 3.88117 4.00215 4.08392 4.20222 4.27983 4.28946 4.36017 4.45112 4.49923 4.54625 4.57894 4.59849 4.62183 4.72976 4.76957 4.82521 4.83438 4.88646 4.92786 4.95210 4.97202 5.01191 5.04615 5.10969 5.17319 5.23092 5.30647 5.32554 5.38946 5.44557 5.55357 5.59606 5.62588 5.76177 5.88599 6.06556 6.17582 6.28676 6.42391 6.57307 6.90473 7.21426 7.47144 8.93113 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.002716 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.643837 B =10307.450936 C =11010.405407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.107 4.107 7 C 0.132 3.868 8 C -0.141 4.141 9 N -0.701 5.701 10 C 0.698 3.302 11 O -0.576 6.576 12 N -0.570 5.570 13 C 0.299 3.701 14 N -0.558 5.558 15 C 0.034 3.966 16 C 0.224 3.776 17 H 0.018 0.982 18 C -0.155 4.155 19 C -0.513 4.513 20 H 0.051 0.949 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 0.952 3.048 24 H -0.276 1.276 25 H -0.278 1.278 26 H -0.281 1.281 27 C 0.523 3.477 28 O -0.491 6.491 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.448 0.552 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.027 0.973 51 H 0.065 0.935 52 H 0.031 0.969 53 H 0.032 0.968 54 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 -8.107 19.398 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.042 3.958 8 C -0.199 4.199 9 N -0.368 5.368 10 C 0.398 3.602 11 O -0.451 6.451 12 N -0.317 5.317 13 C 0.087 3.913 14 N -0.284 5.284 15 C -0.114 4.114 16 C 0.117 3.883 17 H 0.036 0.964 18 C -0.215 4.215 19 C -0.551 4.551 20 H 0.069 0.931 21 C -0.181 4.181 22 N -0.556 5.556 23 Si 0.779 3.221 24 H -0.201 1.201 25 H -0.204 1.204 26 H -0.206 1.206 27 C 0.311 3.689 28 O -0.362 6.362 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.295 0.705 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.046 0.954 51 H 0.084 0.916 52 H 0.050 0.950 53 H 0.051 0.949 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.962 -8.130 18.829 27.932 hybrid contribution 0.561 0.896 -1.012 1.464 sum -18.401 -7.234 17.816 26.615 Atomic orbital electron populations 1.21786 0.95716 1.01718 1.01907 1.21560 0.96059 0.97176 1.01812 1.21592 0.94881 0.96650 1.02332 1.21566 0.95681 0.96288 1.02080 1.21587 0.91910 0.97868 1.03522 1.21801 0.98316 0.90577 1.03846 1.21631 0.87809 0.96445 0.89948 1.22066 1.05290 1.00284 0.92271 1.45582 1.08126 1.58045 1.25010 1.16109 0.81687 0.79567 0.82810 1.91029 1.85356 1.44128 1.24554 1.46716 1.08898 1.51471 1.24573 1.21756 0.80815 0.95720 0.92994 1.61814 1.45141 1.07562 1.13835 1.22337 0.97967 0.93591 0.97513 1.19068 0.87650 0.93817 0.87783 0.96448 1.22228 1.01159 0.98673 0.99404 1.21337 0.96988 1.25067 1.11742 0.93093 1.25548 0.95560 0.98283 0.98723 1.69987 1.09558 1.44872 1.31159 0.85644 0.78504 0.79526 0.78448 1.20127 1.20364 1.20608 1.21498 0.92699 0.75443 0.79283 1.90738 1.50519 1.44949 1.50035 0.93010 0.92737 0.92279 0.92834 0.91787 0.90994 0.92412 0.93195 0.91147 0.88878 0.91815 0.92850 0.88136 0.87126 0.88776 0.92232 0.70455 0.89226 0.91242 0.92095 0.91759 0.95407 0.91620 0.94996 0.94922 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.36 5.93 30.59 0.18 -1.18 16 3 C -0.12 -1.15 5.21 30.59 0.16 -0.99 16 4 C -0.12 -1.27 5.21 30.59 0.16 -1.11 16 5 C -0.11 -1.12 4.80 30.60 0.15 -0.97 16 6 C -0.11 -1.63 4.55 30.59 0.14 -1.49 16 7 C 0.13 2.50 1.01 2.98 0.00 2.51 16 8 C -0.14 -1.70 8.71 71.99 0.63 -1.07 16 9 N -0.70 -15.59 5.42 -439.82 -2.38 -17.98 16 10 C 0.70 24.53 8.62 179.44 1.55 26.08 16 11 O -0.58 -26.22 17.48 -3.83 -0.07 -26.29 16 12 N -0.57 -20.21 2.82 -783.56 -2.21 -22.42 16 13 C 0.30 12.44 4.00 170.80 0.68 13.13 16 14 N -0.56 -25.23 4.78 -913.81 -4.37 -29.60 16 15 C 0.03 1.31 9.13 127.69 1.17 2.47 16 16 C 0.22 11.63 2.28 44.17 0.10 11.73 16 17 H 0.02 1.00 7.97 -2.38 -0.02 0.98 16 18 C -0.16 -7.53 8.15 71.98 0.59 -6.94 16 19 C -0.51 -29.67 7.67 25.60 0.20 -29.48 16 20 H 0.05 3.14 7.56 -2.91 -0.02 3.12 16 21 C 0.02 1.02 5.30 84.65 0.45 1.47 16 22 N -0.92 -53.31 11.39 21.45 0.24 -53.06 16 23 Si 0.95 46.67 29.54 68.60 2.03 48.70 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 27 C 0.52 15.16 6.22 87.94 0.55 15.70 16 28 O -0.49 -15.75 16.63 -2.91 -0.05 -15.80 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 0.53 6.75 -2.39 -0.02 0.52 16 39 H 0.06 0.69 7.03 -2.39 -0.02 0.68 16 40 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 0.66 6.82 -2.39 -0.02 0.64 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.45 7.32 8.11 -92.70 -0.75 6.57 16 46 H 0.09 4.27 6.16 -2.39 -0.01 4.26 16 47 H 0.07 2.73 7.48 -2.39 -0.02 2.71 16 48 H 0.06 2.19 6.20 -2.39 -0.01 2.18 16 49 H 0.06 2.41 8.03 -2.38 -0.02 2.39 16 50 H 0.03 1.03 6.69 -2.39 -0.02 1.02 16 51 H 0.06 3.51 6.27 -2.38 -0.01 3.49 16 52 H 0.03 1.49 7.00 -2.39 -0.02 1.48 16 53 H 0.03 1.39 6.65 -2.39 -0.02 1.37 16 54 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -71.80 418.95 0.73 -71.07 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.13 Total: 16.32 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 7.41 Total: 29.06 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -8.72 Total: -123.06 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.12 Total: -42.09 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -71.80 0.73 -71.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738042902.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.379 kcal (2) G-P(sol) polarization free energy of solvation -71.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds