Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46765 * 2 1 4 4 C 1.52998 * 109.46908 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47157 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47135 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.47149 * 55.00363 * 6 5 4 8 8 C 1.53001 * 109.47046 * 174.99811 * 6 5 4 9 9 N 1.46497 * 109.47456 * 295.00231 * 6 5 4 10 10 C 1.34780 * 120.00141 * 154.99879 * 9 6 5 11 11 O 1.21355 * 119.99634 * 0.02562 * 10 9 6 12 12 C 1.49447 * 120.00179 * 180.02562 * 10 9 6 13 13 O 1.21353 * 119.99724 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99907 * 179.72582 * 12 10 9 15 15 C 1.46506 * 119.99998 * 179.97438 * 14 12 10 16 16 C 1.53033 * 109.45828 * 275.02729 * 15 14 12 17 17 C 1.53195 * 109.31144 * 178.59936 * 16 15 14 18 18 N 1.46923 * 108.76690 * 54.65445 * 17 16 15 19 19 C 1.36938 * 120.63172 * 126.40574 * 18 17 16 20 20 H 1.08000 * 119.99855 * 332.60779 * 19 18 17 21 21 C 1.38815 * 120.00024 * 152.61030 * 19 18 17 22 22 N 1.31615 * 119.99751 * 159.34094 * 21 19 18 23 23 Si 1.86801 * 119.99984 * 339.34627 * 21 19 18 24 24 H 1.48501 * 109.46991 * 92.94017 * 23 21 19 25 25 H 1.48499 * 109.47046 * 212.94290 * 23 21 19 26 26 H 1.48494 * 109.46990 * 332.94088 * 23 21 19 27 27 C 1.46928 * 118.73829 * 306.38822 * 18 17 16 28 28 C 1.53032 * 109.46004 * 154.97100 * 15 14 12 29 29 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47256 * 300.00374 * 1 2 3 31 31 H 1.09004 * 109.47240 * 60.00519 * 1 2 3 32 32 H 1.08993 * 109.47048 * 240.00361 * 2 1 3 33 33 H 1.08995 * 109.47063 * 119.99483 * 2 1 3 34 34 H 1.08994 * 109.47656 * 59.99915 * 3 2 1 35 35 H 1.09004 * 109.46818 * 299.99739 * 3 2 1 36 36 H 1.09003 * 109.47402 * 59.99449 * 4 3 2 37 37 H 1.09004 * 109.46950 * 299.99391 * 4 3 2 38 38 H 1.09002 * 109.46562 * 60.00045 * 5 4 3 39 39 H 1.08993 * 109.47131 * 300.00060 * 5 4 3 40 40 H 1.09000 * 109.47305 * 180.02562 * 8 6 5 41 41 H 1.08994 * 109.47450 * 300.00561 * 8 6 5 42 42 H 1.08999 * 109.46845 * 60.00372 * 8 6 5 43 43 H 0.96998 * 119.99866 * 335.00420 * 9 6 5 44 44 H 0.97000 * 120.00640 * 359.97438 * 14 12 10 45 45 H 1.08998 * 109.45829 * 34.99927 * 15 14 12 46 46 H 1.08991 * 109.50228 * 298.55999 * 16 15 14 47 47 H 1.09000 * 109.50114 * 58.66707 * 16 15 14 48 48 H 1.09007 * 109.59851 * 294.86874 * 17 16 15 49 49 H 1.08996 * 109.70527 * 174.50521 * 17 16 15 50 50 H 0.97010 * 119.99716 * 180.02562 * 22 21 19 51 51 H 1.09006 * 109.58290 * 293.81459 * 27 18 17 52 52 H 1.09003 * 109.70460 * 173.46401 * 27 18 17 53 53 H 1.09004 * 109.50203 * 301.33784 * 28 15 14 54 54 H 1.08996 * 109.50170 * 61.40627 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0013 7 1 5.9733 2.2954 -0.8429 8 6 6.1199 4.3222 -0.1277 9 7 6.0983 2.3020 1.2507 10 6 7.3203 1.7355 1.2987 11 8 8.0162 1.7089 0.3048 12 6 7.8184 1.1400 2.5757 13 8 7.1223 1.1662 3.5694 14 7 9.0381 0.5687 2.6222 15 6 9.5266 -0.0146 3.8742 16 6 10.1673 1.0799 4.7306 17 6 10.6454 0.4733 6.0536 18 7 11.5330 -0.6602 5.7603 19 6 12.7880 -0.7228 6.3047 20 1 13.3084 0.1863 6.5678 21 6 13.3912 -1.9546 6.5185 22 7 14.6988 -2.0336 6.6462 23 14 12.3472 -3.5000 6.6247 24 1 12.2540 -4.1276 5.2821 25 1 12.9716 -4.4548 7.5753 26 1 10.9861 -3.1460 7.1012 27 6 11.0484 -1.7256 4.8721 28 6 10.5654 -1.0942 3.5626 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.9330 0.9288 -0.8908 37 1 3.9336 0.9287 0.8892 38 1 3.7169 3.3992 0.8887 39 1 3.7162 3.3987 -0.8912 40 1 7.2099 4.3222 -0.1282 41 1 5.7565 4.7561 -1.0592 42 1 5.7565 4.9119 0.7139 43 1 5.5422 2.3235 2.0451 44 1 9.5926 0.5435 1.8267 45 1 8.6926 -0.4591 4.4174 46 1 11.0168 1.5078 4.1984 47 1 9.4335 1.8602 4.9327 48 1 9.7867 0.1258 6.6280 49 1 11.1890 1.2241 6.6270 50 1 15.1204 -2.8945 6.7952 51 1 10.2225 -2.2524 5.3502 52 1 11.8569 -2.4264 4.6636 53 1 10.1150 -1.8617 2.9331 54 1 11.4109 -0.6458 3.0409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774654779.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -100.417286 kcal Electronic energy + Delta-G solvation = -29863.717285 eV Core-core repulsion = 25834.119269 eV Total energy + Delta-G solvation = -4029.598017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.85240 -40.26788 -39.05373 -38.06061 -36.41852 -35.95440 -34.08898 -33.08912 -32.02774 -31.87275 -31.18123 -27.48756 -27.26716 -25.70008 -24.50199 -23.61758 -23.08576 -21.86673 -21.70574 -21.45289 -21.25652 -19.60744 -18.66242 -18.14640 -17.42284 -17.05857 -16.79332 -16.42282 -16.30724 -15.96491 -15.47647 -15.33667 -15.19918 -14.98564 -14.87064 -14.66560 -14.52219 -14.45791 -14.19036 -13.88903 -13.85512 -13.49346 -13.45971 -13.07652 -12.87543 -12.79100 -12.60185 -12.53997 -12.51735 -12.29242 -12.10389 -12.04314 -11.82703 -11.80662 -11.71059 -11.58963 -11.38369 -11.35689 -11.33408 -10.81507 -10.61843 -10.29939 -10.21494 -8.97194 -8.15788 -5.48475 0.33520 1.30089 1.30639 1.43590 1.52275 2.13387 2.42136 2.60556 3.05207 3.31141 3.41654 3.61011 3.71593 3.90867 3.96862 4.01079 4.16973 4.18268 4.27631 4.28661 4.31108 4.45212 4.45263 4.58894 4.60665 4.64184 4.74465 4.77113 4.79117 4.80391 4.89466 4.92973 4.94061 4.96166 5.04826 5.06138 5.07910 5.12609 5.14346 5.25340 5.26423 5.28637 5.34626 5.37776 5.38893 5.49091 5.53319 5.86587 5.94080 6.13088 6.35583 6.73402 6.90578 6.94095 7.61323 8.01293 9.03859 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002059 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.470018 B =13594.228667 C =14630.433316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.118 4.118 6 C 0.137 3.863 7 H 0.080 0.920 8 C -0.162 4.162 9 N -0.682 5.682 10 C 0.512 3.488 11 O -0.543 6.543 12 C 0.505 3.495 13 O -0.542 6.542 14 N -0.685 5.685 15 C 0.158 3.842 16 C -0.130 4.130 17 C 0.148 3.852 18 N -0.619 5.619 19 C -0.249 4.249 20 H 0.052 0.948 21 C -0.035 4.035 22 N -0.956 5.956 23 Si 0.945 3.055 24 H -0.270 1.270 25 H -0.312 1.312 26 H -0.261 1.261 27 C 0.122 3.878 28 C -0.131 4.131 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.417 0.583 44 H 0.417 0.583 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.060 0.940 50 H 0.262 0.738 51 H 0.037 0.963 52 H 0.058 0.942 53 H 0.090 0.910 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.589 9.853 -17.577 34.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.160 4.160 5 C -0.156 4.156 6 C 0.034 3.966 7 H 0.098 0.902 8 C -0.220 4.220 9 N -0.336 5.336 10 C 0.292 3.708 11 O -0.420 6.420 12 C 0.286 3.714 13 O -0.420 6.420 14 N -0.337 5.337 15 C 0.054 3.946 16 C -0.170 4.170 17 C 0.022 3.978 18 N -0.344 5.344 19 C -0.379 4.379 20 H 0.070 0.930 21 C -0.229 4.229 22 N -0.602 5.602 23 Si 0.774 3.226 24 H -0.197 1.197 25 H -0.241 1.241 26 H -0.186 1.186 27 C -0.003 4.003 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.255 0.745 44 H 0.254 0.746 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.076 0.924 53 H 0.108 0.892 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.491 9.785 -17.555 34.866 hybrid contribution 0.466 -0.945 0.486 1.160 sum -28.025 8.840 -17.068 33.983 Atomic orbital electron populations 1.21778 0.95476 1.01717 1.02040 1.21567 0.96269 0.97338 1.01597 1.21580 0.94573 0.96511 1.02577 1.21623 0.95977 0.96641 1.01766 1.21892 0.91290 0.97558 1.04814 1.21299 0.95357 0.94639 0.85352 0.90196 1.22168 1.00835 0.95276 1.03739 1.45936 1.15848 1.56309 1.15465 1.20022 0.83274 0.79468 0.88011 1.90758 1.56631 1.58267 1.36372 1.20332 0.82599 0.79598 0.88906 1.90753 1.56724 1.57746 1.36737 1.45947 1.16751 1.56348 1.14609 1.20900 0.96353 0.93459 0.83887 1.22236 0.99986 0.97765 0.97054 1.21018 0.92747 0.89308 0.94695 1.44506 1.13666 1.23368 1.52813 1.18851 0.90626 0.92728 1.35663 0.93005 1.25908 0.96345 1.00747 0.99940 1.69970 1.09890 1.25696 1.54626 0.85937 0.79467 0.79922 0.77296 1.19667 1.24119 1.18565 1.21376 0.97397 0.91273 0.90288 1.22196 0.98304 0.98170 0.98372 0.92897 0.92626 0.92295 0.92359 0.92841 0.91628 0.91174 0.92388 0.92925 0.90009 0.88233 0.94113 0.89386 0.91380 0.74526 0.74595 0.89776 0.92072 0.90972 0.94617 0.92135 0.92949 0.94486 0.92383 0.89162 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.37 5.93 30.60 0.18 -1.19 16 3 C -0.11 -1.00 5.21 30.59 0.16 -0.84 16 4 C -0.12 -1.22 5.10 30.59 0.16 -1.06 16 5 C -0.12 -0.89 4.75 30.59 0.15 -0.75 16 6 C 0.14 1.73 2.57 44.99 0.12 1.84 16 7 H 0.08 1.25 7.58 -2.38 -0.02 1.24 16 8 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 9 N -0.68 -11.24 4.52 -443.86 -2.01 -13.24 16 10 C 0.51 11.63 7.85 87.27 0.69 12.31 16 11 O -0.54 -14.52 16.14 -3.26 -0.05 -14.57 16 12 C 0.50 12.95 7.85 87.27 0.69 13.64 16 13 O -0.54 -15.87 16.14 -3.26 -0.05 -15.92 16 14 N -0.68 -17.42 5.07 -443.76 -2.25 -19.67 16 15 C 0.16 4.66 2.42 45.01 0.11 4.76 16 16 C -0.13 -4.18 5.65 30.67 0.17 -4.00 16 17 C 0.15 5.68 6.52 86.36 0.56 6.24 16 18 N -0.62 -28.57 2.77 -699.07 -1.94 -30.51 16 19 C -0.25 -14.02 10.04 84.03 0.84 -13.18 16 20 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 21 C -0.03 -2.01 5.23 84.86 0.44 -1.56 16 22 N -0.96 -59.82 13.97 21.65 0.30 -59.52 16 23 Si 0.95 45.92 24.35 68.60 1.67 47.59 16 24 H -0.27 -12.22 6.62 99.48 0.66 -11.56 16 25 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 26 H -0.26 -12.17 6.63 99.48 0.66 -11.51 16 27 C 0.12 4.96 4.20 86.36 0.36 5.32 16 28 C -0.13 -4.10 5.55 30.67 0.17 -3.93 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.66 7.75 -2.38 -0.02 0.64 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.42 6.07 8.07 -92.71 -0.75 5.32 16 44 H 0.42 9.66 8.07 -92.71 -0.75 8.91 16 45 H 0.08 2.61 7.57 -2.39 -0.02 2.60 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 50 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 51 H 0.04 1.45 7.08 -2.38 -0.02 1.44 16 52 H 0.06 2.60 4.50 -2.39 -0.01 2.59 16 53 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 54 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -68.87 423.08 1.15 -67.73 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.72 Total: 22.42 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.19 Total: 15.69 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -5.89 Total: -122.94 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.11 Total: -30.49 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -68.87 1.15 -67.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774654779.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.690 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds