Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47352 * 2 1 4 4 C 1.52997 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46924 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47280 * 305.00168 * 6 5 4 8 8 C 1.52997 * 109.46742 * 185.00605 * 6 5 4 9 9 N 1.46489 * 109.47248 * 65.00474 * 6 5 4 10 10 C 1.34780 * 120.00251 * 204.99579 * 9 6 5 11 11 O 1.21353 * 119.99745 * 0.02562 * 10 9 6 12 12 C 1.49450 * 120.00454 * 179.97438 * 10 9 6 13 13 O 1.21353 * 119.99802 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99912 * 179.97438 * 12 10 9 15 15 C 1.46503 * 119.99657 * 180.02562 * 14 12 10 16 16 C 1.53044 * 109.45976 * 275.02958 * 15 14 12 17 17 C 1.53193 * 109.31105 * 178.60049 * 16 15 14 18 18 N 1.46921 * 108.76547 * 54.65950 * 17 16 15 19 19 C 1.36931 * 120.63553 * 126.40674 * 18 17 16 20 20 H 1.08005 * 119.99581 * 331.81875 * 19 18 17 21 21 C 1.38817 * 120.00544 * 151.82376 * 19 18 17 22 22 N 1.31619 * 119.99632 * 343.07504 * 21 19 18 23 23 Si 1.86797 * 119.99902 * 163.07039 * 21 19 18 24 24 H 1.48504 * 109.47077 * 90.00492 * 23 21 19 25 25 H 1.48503 * 109.47200 * 210.00037 * 23 21 19 26 26 H 1.48492 * 109.47716 * 330.00211 * 23 21 19 27 27 C 1.46929 * 118.73664 * 306.37971 * 18 17 16 28 28 C 1.53036 * 109.46063 * 154.97455 * 15 14 12 29 29 H 1.09005 * 109.46744 * 59.99733 * 1 2 3 30 30 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46799 * 300.00127 * 1 2 3 32 32 H 1.09000 * 109.46799 * 239.99873 * 2 1 3 33 33 H 1.08996 * 109.46950 * 120.00412 * 2 1 3 34 34 H 1.09002 * 109.46972 * 59.99712 * 3 2 1 35 35 H 1.09008 * 109.47077 * 300.00240 * 3 2 1 36 36 H 1.08996 * 109.46943 * 300.00367 * 4 3 2 37 37 H 1.09000 * 109.46871 * 59.99869 * 4 3 2 38 38 H 1.08996 * 109.47005 * 300.00331 * 5 4 3 39 39 H 1.09000 * 109.46963 * 60.00308 * 5 4 3 40 40 H 1.08996 * 109.47853 * 60.00074 * 8 6 5 41 41 H 1.08999 * 109.47020 * 180.02562 * 8 6 5 42 42 H 1.09001 * 109.47613 * 299.99714 * 8 6 5 43 43 H 0.96999 * 120.00308 * 25.00063 * 9 6 5 44 44 H 0.96992 * 120.00234 * 0.02562 * 14 12 10 45 45 H 1.09003 * 109.45957 * 35.00104 * 15 14 12 46 46 H 1.08990 * 109.50052 * 298.56662 * 16 15 14 47 47 H 1.09006 * 109.49621 * 58.66518 * 16 15 14 48 48 H 1.09001 * 109.60053 * 294.86593 * 17 16 15 49 49 H 1.09001 * 109.70479 * 174.50784 * 17 16 15 50 50 H 0.96998 * 119.99553 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.59036 * 293.81947 * 27 18 17 52 52 H 1.09008 * 109.70327 * 173.46410 * 27 18 17 53 53 H 1.08997 * 109.49902 * 301.34176 * 28 15 14 54 54 H 1.09006 * 109.49876 * 61.43749 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8848 -0.0026 7 1 5.9742 2.2954 0.8390 8 6 6.1202 4.3218 0.1226 9 7 6.0974 2.3010 -1.2547 10 6 7.3193 1.7344 -1.3035 11 8 8.0157 1.7075 -0.3100 12 6 7.8162 1.1383 -2.5807 13 8 7.1196 1.1648 -3.5740 14 7 9.0383 0.5722 -2.6295 15 6 9.5256 -0.0116 -3.8817 16 6 9.0151 -1.4490 -4.0067 17 6 9.4974 -2.0444 -5.3332 18 7 10.9592 -1.9150 -5.4056 19 6 11.7450 -3.0088 -5.6528 20 1 11.4101 -3.9922 -5.3573 21 6 12.9721 -2.8538 -6.2830 22 7 13.2410 -1.7428 -6.9355 23 14 14.2416 -4.2219 -6.2050 24 1 14.0480 -5.1429 -7.3537 25 1 15.6049 -3.6361 -6.2645 26 1 14.0812 -4.9742 -4.9348 27 6 11.5617 -0.5896 -5.2082 28 6 11.0560 -0.0103 -3.8833 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9284 0.8890 37 1 3.9330 0.9287 -0.8909 38 1 3.7164 3.3985 -0.8912 39 1 3.7172 3.3990 0.8887 40 1 5.7578 4.7563 1.0543 41 1 7.2102 4.3218 0.1213 42 1 5.7563 4.9113 -0.7189 43 1 5.5406 2.3222 -2.0487 44 1 9.5952 0.5514 -1.8357 45 1 9.1611 0.5777 -4.7232 46 1 9.3996 -2.0449 -3.1791 47 1 7.9253 -1.4515 -3.9819 48 1 9.0413 -1.5050 -6.1634 49 1 9.2208 -3.0974 -5.3856 50 1 14.0983 -1.6347 -7.3762 51 1 11.2740 0.0684 -6.0282 52 1 12.6475 -0.6805 -5.1765 53 1 11.4190 1.0112 -3.7706 54 1 11.4212 -0.6200 -3.0568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774654781.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -104.156075 kcal Electronic energy + Delta-G solvation = -29803.189749 eV Core-core repulsion = 25773.429607 eV Total energy + Delta-G solvation = -4029.760143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.83892 -40.19948 -38.88422 -38.05664 -36.37484 -35.92222 -33.95224 -33.08155 -31.86425 -31.30966 -31.12559 -27.48140 -27.27103 -25.79815 -23.99063 -23.68510 -23.05121 -21.85767 -21.68814 -21.45000 -21.07285 -19.54921 -18.59247 -18.10899 -17.14020 -16.92269 -16.84089 -16.47257 -16.28893 -15.61645 -15.43082 -15.36232 -15.07273 -14.96446 -14.79913 -14.73253 -14.48190 -14.23701 -14.13465 -13.86117 -13.46960 -13.23634 -13.08020 -13.02211 -12.86956 -12.78406 -12.60951 -12.53217 -12.50813 -12.23507 -12.09768 -12.04587 -11.89036 -11.80172 -11.70738 -11.60557 -11.38525 -11.35143 -11.32937 -10.67235 -10.56284 -10.29502 -10.17994 -8.71015 -7.88332 -5.33458 0.33952 1.31357 1.48107 1.49711 1.59360 2.13810 2.51833 2.62357 3.27963 3.40563 3.61429 3.65854 3.83224 3.97198 3.98169 4.01607 4.18738 4.27485 4.28129 4.31693 4.43149 4.45686 4.60922 4.62615 4.72315 4.75000 4.77783 4.79725 4.81963 4.93405 4.94292 4.95205 5.01141 5.06548 5.08272 5.11944 5.13137 5.26454 5.27509 5.28627 5.32299 5.35919 5.38396 5.45865 5.49556 5.53859 5.64305 5.69478 5.95330 6.36351 6.39242 6.74473 6.94840 7.14260 7.83758 8.36218 9.18877 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.001985 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.583949 B =14102.330643 C =15226.347791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.118 4.118 6 C 0.136 3.864 7 H 0.080 0.920 8 C -0.162 4.162 9 N -0.682 5.682 10 C 0.514 3.486 11 O -0.542 6.542 12 C 0.503 3.497 13 O -0.545 6.545 14 N -0.684 5.684 15 C 0.160 3.840 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.968 3.032 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.270 1.270 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.417 0.583 44 H 0.417 0.583 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.013 0.987 49 H 0.059 0.941 50 H 0.251 0.749 51 H 0.000 1.000 52 H 0.063 0.937 53 H 0.077 0.923 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.104 11.452 17.555 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.161 4.161 5 C -0.155 4.155 6 C 0.033 3.967 7 H 0.098 0.902 8 C -0.220 4.220 9 N -0.336 5.336 10 C 0.294 3.706 11 O -0.420 6.420 12 C 0.283 3.717 13 O -0.423 6.423 14 N -0.335 5.335 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.795 3.205 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.195 1.195 27 C 0.053 3.947 28 C -0.171 4.171 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.254 0.746 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.031 0.969 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.018 0.982 52 H 0.082 0.918 53 H 0.096 0.904 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.983 11.490 17.484 30.347 hybrid contribution 1.046 -0.777 -0.558 1.417 sum -20.938 10.713 16.925 28.976 Atomic orbital electron populations 1.21774 0.95425 1.01722 1.02051 1.21570 0.96313 0.97354 1.01579 1.21577 0.94526 0.96500 1.02593 1.21625 0.96025 0.96680 1.01736 1.21891 0.91278 0.97519 1.04834 1.21312 0.95396 0.94689 0.85299 0.90183 1.22166 1.00854 0.95189 1.03762 1.45939 1.15809 1.56293 1.15515 1.19984 0.83313 0.79409 0.87927 1.90749 1.56629 1.58257 1.36337 1.20394 0.82788 0.79486 0.88987 1.90751 1.56390 1.58341 1.36792 1.45982 1.16561 1.56174 1.14820 1.20881 0.94398 0.93838 0.85276 1.22206 0.99877 0.95294 0.99197 1.20965 0.84110 0.98821 0.94169 1.44343 1.00917 1.05337 1.82685 1.19493 1.00018 0.88471 1.31337 0.91517 1.25804 1.01896 0.99615 0.97183 1.70171 1.23270 1.28547 1.36014 0.85282 0.78334 0.78812 0.78025 1.21282 1.21819 1.19531 1.20557 0.98096 0.84583 0.91453 1.22302 0.93124 1.01398 1.00320 0.92623 0.92900 0.92249 0.92920 0.92357 0.91087 0.91645 0.92380 0.93043 0.90023 0.88133 0.89297 0.94073 0.91397 0.74565 0.74628 0.90965 0.91692 0.91528 0.96859 0.92202 0.94011 0.98212 0.91832 0.90423 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.13 -1.51 5.93 30.60 0.18 -1.33 16 3 C -0.11 -1.10 5.21 30.59 0.16 -0.94 16 4 C -0.12 -1.37 5.10 30.59 0.16 -1.21 16 5 C -0.12 -1.00 4.75 30.59 0.15 -0.86 16 6 C 0.14 1.86 2.57 44.99 0.12 1.97 16 7 H 0.08 1.33 7.58 -2.39 -0.02 1.32 16 8 C -0.16 -2.01 9.48 71.98 0.68 -1.32 16 9 N -0.68 -12.24 4.52 -443.88 -2.01 -14.25 16 10 C 0.51 12.55 7.85 87.27 0.69 13.23 16 11 O -0.54 -15.25 16.14 -3.26 -0.05 -15.30 16 12 C 0.50 14.20 7.85 87.27 0.69 14.88 16 13 O -0.54 -17.62 16.14 -3.26 -0.05 -17.67 16 14 N -0.68 -19.36 5.07 -443.73 -2.25 -21.61 16 15 C 0.16 5.37 2.42 45.02 0.11 5.48 16 16 C -0.13 -4.39 5.65 30.67 0.17 -4.22 16 17 C 0.15 6.15 6.52 86.36 0.56 6.71 16 18 N -0.61 -30.46 2.99 -699.08 -2.09 -32.55 16 19 C -0.26 -14.37 9.58 84.04 0.81 -13.57 16 20 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 22 N -0.93 -54.79 11.19 21.65 0.24 -54.54 16 23 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 C 0.18 8.50 5.30 86.36 0.46 8.95 16 28 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.72 7.75 -2.39 -0.02 0.71 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.42 6.75 8.07 -92.71 -0.75 6.00 16 44 H 0.42 10.64 8.07 -92.71 -0.75 9.89 16 45 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 49 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 50 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 51 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 52 H 0.06 3.38 6.07 -2.38 -0.01 3.37 16 53 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 54 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -65.90 429.53 1.41 -64.49 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.63 Total: 24.81 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.22 Total: 20.05 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -6.11 Total: -122.95 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.11 Total: -32.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.90 1.41 -64.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774654781.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.663 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds