Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 C 1.53001 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47164 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47457 * 180.02562 * 5 4 3 7 7 C 1.52990 * 109.47292 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99891 * 180.02562 * 8 7 6 10 10 O 1.21349 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.49457 * 119.99707 * 179.97438 * 9 8 7 12 12 O 1.21348 * 119.99849 * 353.51129 * 11 9 8 13 13 N 1.34768 * 120.00031 * 173.79261 * 11 9 8 14 14 C 1.47084 * 120.88232 * 180.83197 * 13 11 9 15 15 C 1.53699 * 108.27661 * 128.75318 * 14 13 11 16 16 N 1.46904 * 109.26040 * 54.08126 * 15 14 13 17 17 C 1.46891 * 111.00218 * 172.60792 * 16 15 14 18 18 C 1.50708 * 109.46997 * 294.30399 * 17 16 15 19 19 H 1.07996 * 120.00122 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99837 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00036 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99925 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47352 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46787 * 120.00193 * 22 20 18 25 25 H 1.48500 * 109.47509 * 240.00105 * 22 20 18 26 26 C 1.46896 * 111.26775 * 296.75960 * 16 15 14 27 27 C 1.47086 * 120.88250 * 1.10796 * 13 11 9 28 28 H 1.09004 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46923 * 299.99659 * 1 2 3 30 30 H 1.08994 * 109.47125 * 59.99881 * 1 2 3 31 31 H 1.08993 * 109.47049 * 240.00118 * 2 1 3 32 32 H 1.09001 * 109.46950 * 119.99789 * 2 1 3 33 33 H 1.09001 * 109.47059 * 60.00425 * 3 2 1 34 34 H 1.08994 * 109.47334 * 299.99990 * 3 2 1 35 35 H 1.08993 * 109.47049 * 60.00118 * 4 3 2 36 36 H 1.09008 * 109.47163 * 300.00132 * 4 3 2 37 37 H 1.08997 * 109.47150 * 59.99194 * 5 4 3 38 38 H 1.09007 * 109.46363 * 300.00159 * 5 4 3 39 39 H 1.09006 * 109.47070 * 59.99367 * 6 5 4 40 40 H 1.09000 * 109.47150 * 300.00080 * 6 5 4 41 41 H 1.08997 * 109.47382 * 59.99645 * 7 6 5 42 42 H 1.09008 * 109.47224 * 299.99987 * 7 6 5 43 43 H 0.97000 * 119.99435 * 359.97438 * 8 7 6 44 44 H 1.08992 * 109.62696 * 248.51735 * 14 13 11 45 45 H 1.08999 * 109.62866 * 9.10511 * 14 13 11 46 46 H 1.09003 * 109.64530 * 294.08090 * 15 14 13 47 47 H 1.08997 * 109.42269 * 173.94875 * 15 14 13 48 48 H 1.08997 * 109.47187 * 54.30054 * 17 16 15 49 49 H 1.08995 * 109.47175 * 174.30436 * 17 16 15 50 50 H 0.96992 * 120.00172 * 179.97438 * 21 20 18 51 51 H 1.09003 * 109.49570 * 303.13917 * 26 16 15 52 52 H 1.09002 * 109.49595 * 183.06212 * 26 16 15 53 53 H 1.08997 * 109.62790 * 350.89766 * 27 13 11 54 54 H 1.08996 * 109.62728 * 111.47792 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6099 2.8851 0.0013 7 6 6.1199 4.3275 0.0013 8 7 7.5849 4.3276 0.0007 9 6 8.2587 5.4948 0.0011 10 8 7.6519 6.5457 0.0015 11 6 9.7533 5.4949 0.0010 12 8 10.3600 4.4506 0.1194 13 7 10.4271 6.6552 -0.1248 14 6 11.8977 6.6758 -0.1455 15 6 12.3512 7.4770 -1.3762 16 7 11.7122 8.7997 -1.3558 17 6 12.2511 9.6611 -2.4166 18 6 13.7034 9.9520 -2.1382 19 1 14.1786 9.5379 -1.2613 20 6 14.4257 10.7458 -3.0038 21 7 13.8471 11.2496 -4.0720 22 14 16.2255 11.1069 -2.6585 23 1 16.6347 10.4276 -1.4030 24 1 17.0554 10.6074 -3.7841 25 1 16.4177 12.5724 -2.5141 26 6 10.2513 8.6873 -1.4601 27 6 9.7116 7.9352 -0.2389 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 3.7162 3.3986 0.8912 38 1 3.7169 3.3991 -0.8888 39 1 5.9733 2.3716 -0.8889 40 1 5.9733 2.3709 0.8910 41 1 5.7565 4.8414 0.8912 42 1 5.7565 4.8414 -0.8888 43 1 8.0699 3.4876 0.0007 44 1 12.2699 7.1510 0.7620 45 1 12.2773 5.6562 -0.2106 46 1 12.0629 6.9479 -2.2846 47 1 13.4344 7.5960 -1.3523 48 1 12.1597 9.1546 -3.3774 49 1 11.6921 10.5964 -2.4442 50 1 14.3551 11.8084 -4.6807 51 1 9.9923 8.1414 -2.3673 52 1 9.8115 9.6840 -1.4970 53 1 8.6452 7.7485 -0.3657 54 1 9.8778 8.5290 0.6598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867806375.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -96.891780 kcal Electronic energy + Delta-G solvation = -28914.747726 eV Core-core repulsion = 24885.302586 eV Total energy + Delta-G solvation = -4029.445139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.06991 -40.06988 -39.01615 -37.88077 -36.64313 -35.83772 -34.42615 -34.03571 -32.18419 -30.85530 -30.19774 -27.86573 -27.04082 -25.53859 -24.41332 -23.76418 -23.05501 -22.26593 -21.76171 -21.67750 -20.61048 -18.81006 -18.40421 -18.17322 -17.40162 -17.04655 -16.87753 -16.58618 -16.10982 -16.09925 -16.05721 -15.61060 -15.42868 -15.23043 -15.02294 -14.84064 -14.43495 -14.23319 -14.14874 -14.08001 -13.66262 -13.25106 -13.12950 -13.09427 -12.93227 -12.82747 -12.75059 -12.59142 -12.35764 -12.23772 -12.14613 -12.11907 -12.03949 -11.76917 -11.75294 -11.52075 -11.36555 -11.29711 -11.28814 -10.63772 -10.38197 -10.19511 -9.92961 -9.09184 -8.21038 -6.31329 0.25233 1.20854 1.42118 1.42941 1.56396 2.03608 2.35910 2.41811 3.11394 3.18590 3.24545 3.69669 3.92523 3.98388 4.01157 4.05054 4.14903 4.19596 4.21665 4.28687 4.39234 4.40303 4.43251 4.52667 4.63910 4.65009 4.73638 4.73940 4.81008 4.87591 4.89863 4.97858 4.98724 5.02374 5.03259 5.09506 5.12242 5.18255 5.21632 5.25690 5.29987 5.30329 5.41556 5.44796 5.53005 5.57201 5.63283 5.91665 6.02042 6.14226 6.26904 6.54960 6.61570 6.84133 6.86034 7.38708 8.90512 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.001468 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.684022 B =19073.453856 C =19437.751562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.114 3.886 8 N -0.684 5.684 9 C 0.513 3.487 10 O -0.524 6.524 11 C 0.502 3.498 12 O -0.548 6.548 13 N -0.577 5.577 14 C 0.121 3.879 15 C 0.056 3.944 16 N -0.540 5.540 17 C 0.208 3.792 18 C -0.523 4.523 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.041 3.959 27 C 0.073 3.927 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.420 0.580 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.013 0.987 47 H 0.086 0.914 48 H -0.041 1.041 49 H 0.008 0.992 50 H 0.264 0.736 51 H 0.016 0.984 52 H 0.084 0.916 53 H 0.160 0.840 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.228 -21.874 10.441 33.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.162 4.162 7 C -0.009 4.009 8 N -0.337 5.337 9 C 0.294 3.706 10 O -0.403 6.403 11 C 0.285 3.715 12 O -0.427 6.427 13 N -0.309 5.309 14 C -0.001 4.001 15 C -0.073 4.073 16 N -0.265 5.265 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.088 4.088 27 C -0.048 4.048 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.258 0.742 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.031 0.969 47 H 0.105 0.895 48 H -0.023 1.023 49 H 0.026 0.974 50 H 0.073 0.927 51 H 0.034 0.966 52 H 0.103 0.897 53 H 0.176 0.824 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.226 -21.373 10.809 33.363 hybrid contribution 1.105 0.017 -1.247 1.667 sum -22.121 -21.356 9.562 32.200 Atomic orbital electron populations 1.21795 0.95882 1.01756 1.01811 1.21547 0.95938 0.96958 1.01965 1.21621 0.95433 0.96741 1.02029 1.21571 0.95306 0.96299 1.02317 1.21481 0.93466 0.97472 1.02804 1.21776 0.96779 0.93835 1.03833 1.21713 0.76728 0.99402 1.03018 1.45833 1.08656 1.08107 1.71069 1.19970 0.87837 0.84998 0.77783 1.90351 1.69443 1.30343 1.50140 1.20258 0.88953 0.83817 0.78460 1.90717 1.70143 1.31286 1.50528 1.48234 1.07793 1.07080 1.67826 1.21992 0.78081 1.01381 0.98671 1.22376 1.00591 0.88726 0.95639 1.62052 1.03807 1.12024 1.48652 1.19390 0.95124 0.90762 0.86583 1.21494 0.95570 1.30380 1.08651 0.91446 1.25917 1.03484 0.95529 0.94649 1.70096 1.38534 1.34816 1.14151 0.85319 0.78804 0.77964 0.78445 1.18433 1.20602 1.20499 1.22509 0.88920 1.00591 0.96758 1.23317 1.01391 0.82111 0.97933 0.92604 0.92734 0.92826 0.92163 0.92035 0.92029 0.92184 0.91904 0.91710 0.91331 0.91586 0.90530 0.90235 0.90671 0.91035 0.74236 0.89290 0.88134 0.96853 0.89544 1.02305 0.97391 0.92703 0.96559 0.89730 0.82426 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.00 5.93 30.60 0.18 -0.81 16 3 C -0.12 -0.94 5.21 30.60 0.16 -0.78 16 4 C -0.12 -0.85 5.21 30.59 0.16 -0.69 16 5 C -0.11 -0.85 5.21 30.59 0.16 -0.69 16 6 C -0.12 -0.99 5.33 30.59 0.16 -0.83 16 7 C 0.11 1.46 5.67 86.37 0.49 1.95 16 8 N -0.68 -11.83 5.55 -464.41 -2.58 -14.41 16 9 C 0.51 12.53 7.81 87.27 0.68 13.21 16 10 O -0.52 -14.33 13.03 -3.24 -0.04 -14.37 16 11 C 0.50 14.46 7.77 87.27 0.68 15.14 16 12 O -0.55 -17.02 15.95 -3.24 -0.05 -17.07 16 13 N -0.58 -17.85 3.00 -818.61 -2.46 -20.30 16 14 C 0.12 3.85 6.63 86.50 0.57 4.42 16 15 C 0.06 2.18 5.47 86.54 0.47 2.65 16 16 N -0.54 -23.56 4.62 -898.87 -4.15 -27.71 16 17 C 0.21 11.14 4.72 85.56 0.40 11.55 16 18 C -0.52 -29.40 8.41 25.60 0.22 -29.18 16 19 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.94 -56.39 13.29 21.45 0.28 -56.10 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 C 0.04 1.52 5.62 86.39 0.49 2.01 16 27 C 0.07 2.25 6.35 86.35 0.55 2.80 16 28 H 0.05 0.39 8.14 -2.38 -0.02 0.38 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.42 6.21 7.96 -92.71 -0.74 5.47 16 44 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.10 3.02 7.07 -2.39 -0.02 3.00 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 3.58 6.67 -2.39 -0.02 3.56 16 48 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 49 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 50 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 52 H 0.08 3.06 7.99 -2.39 -0.02 3.04 16 53 H 0.16 4.65 3.93 -74.90 -0.29 4.35 16 54 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -67.07 426.86 -0.58 -67.65 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.16 Total: 15.41 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.55 Total: 20.85 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -8.90 Total: -118.52 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.09 Total: -31.44 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.07 -0.58 -67.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867806375.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.241 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds