Wall clock time and date at job start Sat Apr 11 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.53000 * 110.88322 * 60.70351 * 5 2 1 7 7 N 1.46907 * 109.46996 * 179.97438 * 6 5 2 8 8 C 1.55153 * 111.00499 * 296.82423 * 5 2 1 9 9 C 1.54377 * 102.92070 * 206.45232 * 8 5 2 10 10 N 1.47023 * 107.28593 * 22.13794 * 9 8 5 11 11 C 1.34774 * 125.64843 * 181.05707 * 10 9 8 12 12 O 1.21344 * 120.00255 * 180.02562 * 11 10 9 13 13 C 1.49455 * 119.99679 * 0.04001 * 11 10 9 14 14 O 1.21344 * 120.00065 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99521 * 180.02562 * 13 11 10 16 16 C 1.46504 * 119.99546 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.52991 * 109.47062 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47181 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99628 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99951 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00123 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47331 * 89.99596 * 23 21 19 25 25 H 1.48504 * 109.47176 * 209.99853 * 23 21 19 26 26 H 1.48505 * 109.47028 * 329.99480 * 23 21 19 27 27 C 1.47427 * 108.70538 * 1.09344 * 10 9 8 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 35 35 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 37 37 H 1.08995 * 109.47312 * 299.99742 * 6 5 2 38 38 H 1.08999 * 109.47459 * 60.00285 * 6 5 2 39 39 H 1.00900 * 110.99846 * 180.02562 * 7 6 5 40 40 H 1.00901 * 110.99861 * 303.95275 * 7 6 5 41 41 H 1.08999 * 110.72042 * 324.78459 * 8 5 2 42 42 H 1.09001 * 110.72375 * 88.05933 * 8 5 2 43 43 H 1.08996 * 109.84533 * 262.72785 * 9 8 5 44 44 H 1.08997 * 110.02747 * 141.64738 * 9 8 5 45 45 H 0.97001 * 120.00379 * 359.97438 * 15 13 11 46 46 H 1.08998 * 109.46829 * 299.99680 * 16 15 13 47 47 H 1.08997 * 109.47452 * 59.99637 * 16 15 13 48 48 H 1.09002 * 109.46964 * 300.00023 * 17 16 15 49 49 H 1.08997 * 109.47275 * 59.99609 * 17 16 15 50 50 H 1.09002 * 109.47138 * 299.99780 * 18 17 16 51 51 H 1.08997 * 109.47507 * 59.99614 * 18 17 16 52 52 H 0.96996 * 119.99638 * 180.02562 * 22 21 19 53 53 H 1.09000 * 110.36605 * 217.03294 * 27 10 9 54 54 H 1.09000 * 110.45859 * 94.75549 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5624 -0.0153 -2.5198 7 7 2.0691 -0.7318 -3.6980 8 6 1.6092 -2.2118 -1.2456 9 6 2.7019 -2.8890 -2.1004 10 7 3.8820 -2.0124 -2.0753 11 6 5.0439 -2.2407 -2.7190 12 8 5.9554 -1.4451 -2.6263 13 6 5.2095 -3.4738 -3.5472 14 8 4.2978 -4.2690 -3.6404 15 7 6.3716 -3.7023 -4.1905 16 6 6.5338 -4.9107 -5.0028 17 6 7.9340 -4.9265 -5.6193 18 6 8.1032 -6.1881 -6.4681 19 6 9.4825 -6.2041 -7.0749 20 1 10.1696 -5.3951 -6.8755 21 6 9.8669 -7.2511 -7.8856 22 7 9.0301 -8.2360 -8.1289 23 14 11.5764 -7.2705 -8.6383 24 1 12.5143 -7.9638 -7.7191 25 1 11.5369 -7.9874 -9.9383 26 1 12.0372 -5.8756 -8.8562 27 6 3.5843 -0.8428 -1.2286 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7217 1.2491 36 1 1.6766 -0.2074 2.1393 37 1 0.4727 -0.0045 -2.5416 38 1 1.9362 1.0085 -2.5291 39 1 1.7674 -0.2845 -4.5506 40 1 3.0746 -0.8113 -3.6680 41 1 1.6105 -2.6112 -0.2315 42 1 0.6288 -2.3310 -1.7069 43 1 2.3498 -3.0075 -3.1250 44 1 2.9544 -3.8626 -1.6804 45 1 7.1003 -3.0663 -4.1163 46 1 6.4033 -5.7913 -4.3739 47 1 5.7874 -4.9175 -5.7970 48 1 8.0641 -4.0458 -6.2482 49 1 8.6807 -4.9195 -4.8254 50 1 7.9730 -7.0691 -5.8396 51 1 7.3564 -6.1948 -7.2621 52 1 9.3007 -8.9727 -8.6989 53 1 4.0410 0.0542 -1.6467 54 1 3.9382 -1.0090 -0.2112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884630835.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:38 Heat of formation + Delta-G solvation = -99.779709 kcal Electronic energy + Delta-G solvation = -30697.052328 eV Core-core repulsion = 26667.481959 eV Total energy + Delta-G solvation = -4029.570369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24315 -40.91627 -39.32752 -37.34742 -36.69034 -35.22716 -34.67933 -33.04016 -31.76654 -30.16559 -28.96174 -28.57317 -27.98244 -26.79337 -25.31073 -24.17404 -23.02907 -22.37049 -22.22711 -20.74746 -19.27062 -18.67491 -18.44159 -18.09511 -17.62831 -17.00434 -16.73995 -16.41205 -16.15925 -16.03570 -15.78105 -15.37778 -15.13167 -14.97286 -14.88880 -14.45873 -14.30276 -14.11550 -13.96076 -13.87252 -13.77737 -13.51370 -13.30467 -12.99271 -12.83627 -12.77454 -12.75893 -12.54909 -12.48542 -12.40109 -12.24072 -12.23531 -11.94822 -11.70203 -11.55193 -11.31736 -11.23638 -11.22339 -11.12413 -10.60166 -10.54947 -10.29291 -9.87195 -9.40942 -8.19517 -6.30434 0.31639 1.20991 1.41810 1.42753 1.53854 2.09698 2.40064 2.47280 3.14217 3.21851 3.41250 3.44754 3.66084 3.82956 4.03116 4.08596 4.09743 4.17745 4.18105 4.34814 4.39117 4.48651 4.52284 4.58445 4.67320 4.81566 4.81950 4.85770 4.87600 4.91311 4.92961 4.94520 5.02424 5.05442 5.12408 5.14554 5.16129 5.20702 5.24162 5.25598 5.35681 5.43666 5.51346 5.56072 5.58155 5.70427 5.84196 5.99313 6.17160 6.21023 6.24505 6.47524 6.62614 6.86282 6.92080 7.38760 8.92348 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.001821 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.721933 B =15371.774204 C =15552.881980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.050 4.050 6 C 0.074 3.926 7 N -0.856 5.856 8 C -0.107 4.107 9 C 0.114 3.886 10 N -0.574 5.574 11 C 0.519 3.481 12 O -0.549 6.549 13 C 0.501 3.499 14 O -0.535 6.535 15 N -0.689 5.689 16 C 0.130 3.870 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.542 4.542 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.263 1.263 27 C 0.103 3.897 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.344 0.656 40 H 0.330 0.670 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.417 0.583 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.066 0.934 50 H -0.004 1.004 51 H -0.003 1.003 52 H 0.263 0.737 53 H 0.070 0.930 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 21.325 19.820 35.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.204 4.204 4 C -0.208 4.208 5 C -0.052 4.052 6 C -0.056 4.056 7 N -0.388 5.388 8 C -0.145 4.145 9 C -0.007 4.007 10 N -0.306 5.306 11 C 0.302 3.698 12 O -0.428 6.428 13 C 0.282 3.718 14 O -0.412 6.412 15 N -0.342 5.342 16 C 0.007 3.993 17 C -0.143 4.143 18 C -0.012 4.012 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.187 1.187 27 C -0.018 4.018 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.254 0.746 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.015 0.985 51 H 0.015 0.985 52 H 0.072 0.928 53 H 0.088 0.912 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.970 20.380 19.930 35.388 hybrid contribution 1.867 0.560 -0.972 2.178 sum -19.102 20.940 18.958 34.100 Atomic orbital electron populations 1.21906 0.93011 1.02517 1.02351 1.20339 0.96578 0.94988 0.92565 1.21982 1.00804 0.95133 1.02515 1.22086 1.00911 1.00887 0.96926 1.21792 0.91815 0.95825 0.95729 1.21884 1.00819 0.94224 0.88660 1.58925 1.16807 1.57877 1.05173 1.22774 0.98298 0.93202 1.00228 1.22240 0.83859 0.92111 1.02525 1.48311 1.12661 1.24228 1.45431 1.19712 0.82527 0.86476 0.81066 1.90748 1.40350 1.47822 1.63864 1.20206 0.83391 0.86953 0.81296 1.90747 1.40363 1.47503 1.62548 1.45861 1.15536 1.25029 1.47739 1.21442 0.98364 0.85815 0.93673 1.21637 0.93931 0.99640 0.99142 1.18928 0.95717 0.92647 0.93950 1.21674 1.00251 1.06743 1.29378 0.91817 1.25989 1.01720 0.95218 0.97056 1.70097 1.37490 1.10923 1.38743 0.85435 0.79251 0.78617 0.77656 1.19857 1.20893 1.18687 1.22742 0.96603 0.87461 0.94973 0.92143 0.92006 0.91825 0.91566 0.93200 0.92187 0.91719 0.92885 0.91481 0.89128 0.94716 0.84250 0.85604 0.89303 0.88835 0.90006 0.92484 0.74589 0.91871 0.91811 0.91532 0.91553 0.98549 0.98504 0.92784 0.91186 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 7.97 71.98 0.57 -0.29 16 2 C -0.04 -0.34 0.39 -52.18 -0.02 -0.36 16 3 C -0.15 -1.15 7.96 71.98 0.57 -0.58 16 4 C -0.15 -1.21 7.83 71.98 0.56 -0.64 16 5 C -0.05 -0.57 0.18 -50.79 -0.01 -0.58 16 6 C 0.07 0.87 5.21 86.30 0.45 1.31 16 7 N -0.86 -13.63 7.37 -186.71 -1.38 -15.01 16 8 C -0.11 -1.37 4.73 31.80 0.15 -1.22 16 9 C 0.11 2.31 4.49 86.75 0.39 2.70 16 10 N -0.57 -12.49 1.85 -813.26 -1.51 -14.00 16 11 C 0.52 14.37 7.43 87.27 0.65 15.02 16 12 O -0.55 -16.95 16.73 -3.23 -0.05 -17.01 16 13 C 0.50 15.53 7.86 87.27 0.69 16.21 16 14 O -0.53 -18.46 14.12 -3.23 -0.05 -18.51 16 15 N -0.69 -21.12 5.55 -464.40 -2.58 -23.70 16 16 C 0.13 4.57 5.67 86.38 0.49 5.06 16 17 C -0.11 -4.15 5.27 30.59 0.16 -3.99 16 18 C 0.03 1.31 4.97 29.85 0.15 1.46 16 19 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 20 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 22 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 23 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 27 C 0.10 1.70 4.35 86.86 0.38 2.08 16 28 H 0.06 0.35 6.57 -2.39 -0.02 0.34 16 29 H 0.06 0.38 7.38 -2.39 -0.02 0.36 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.47 7.38 -2.39 -0.02 0.45 16 33 H 0.06 0.46 6.53 -2.39 -0.02 0.44 16 34 H 0.06 0.51 6.07 -2.39 -0.01 0.49 16 35 H 0.05 0.51 6.04 -2.39 -0.01 0.49 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.09 0.88 6.59 -2.39 -0.02 0.86 16 38 H 0.03 0.39 6.56 -2.39 -0.02 0.37 16 39 H 0.34 4.72 9.08 -89.69 -0.81 3.91 16 40 H 0.33 6.58 6.09 -89.69 -0.55 6.04 16 41 H 0.09 0.94 5.74 -2.39 -0.01 0.93 16 42 H 0.09 1.10 8.02 -2.39 -0.02 1.08 16 43 H 0.08 1.97 6.65 -2.39 -0.02 1.95 16 44 H 0.06 1.29 7.69 -2.39 -0.02 1.28 16 45 H 0.42 11.63 7.94 -92.71 -0.74 10.89 16 46 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 50 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 51 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 53 H 0.07 1.27 7.86 -2.39 -0.02 1.25 16 54 H 0.09 1.35 5.65 -2.39 -0.01 1.34 16 Total: -1.00 -67.45 405.82 1.46 -65.99 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.17 Total: 26.26 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.88 Total: 6.25 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -5.18 Total: -109.20 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.10 Total: -35.51 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.45 1.46 -65.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884630835.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.790 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds