Wall clock time and date at job start Sat Apr 11 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47265 * 120.00338 * 2 1 3 5 5 C 1.53001 * 109.47189 * 59.99535 * 4 2 1 6 6 C 1.53010 * 109.46606 * 299.99742 * 4 2 1 7 7 C 1.50700 * 109.47290 * 179.97438 * 4 2 1 8 8 O 1.21280 * 120.00051 * 356.63763 * 7 4 2 9 9 N 1.34772 * 119.99648 * 176.63497 * 7 4 2 10 10 C 1.47748 * 121.65634 * 351.77464 * 9 7 4 11 11 C 1.53013 * 108.78779 * 271.25960 * 10 9 7 12 12 C 1.50695 * 109.44320 * 304.76133 * 11 10 9 13 13 O 1.21283 * 120.23902 * 296.12837 * 12 11 10 14 14 N 1.35502 * 119.52166 * 116.10056 * 12 11 10 15 15 C 1.47126 * 118.10877 * 180.29556 * 14 12 11 16 16 C 1.53018 * 109.09187 * 99.92894 * 15 14 12 17 17 N 1.47764 * 108.79238 * 301.47868 * 16 15 14 18 18 C 1.36933 * 121.65059 * 276.63382 * 17 16 15 19 19 H 1.08004 * 119.99844 * 30.51705 * 18 17 16 20 20 C 1.38811 * 120.00339 * 210.51488 * 18 17 16 21 21 N 1.31619 * 119.99969 * 10.11561 * 20 18 17 22 22 Si 1.86805 * 119.99968 * 190.11529 * 20 18 17 23 23 H 1.48498 * 109.47185 * 59.99982 * 22 20 18 24 24 H 1.48499 * 109.46979 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47135 * 299.99918 * 22 20 18 26 26 C 1.47749 * 116.70923 * 96.90265 * 17 16 15 27 27 C 1.47779 * 121.64527 * 171.79572 * 9 7 4 28 28 H 1.09000 * 109.46790 * 300.00231 * 1 2 3 29 29 H 1.09006 * 109.46553 * 59.99637 * 1 2 3 30 30 H 1.08996 * 109.47306 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47265 * 239.99917 * 2 1 3 32 32 H 1.08998 * 109.47098 * 300.00130 * 3 2 1 33 33 H 1.09000 * 109.47339 * 60.00106 * 3 2 1 34 34 H 1.09005 * 109.46954 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47035 * 170.98749 * 5 4 2 36 36 H 1.09007 * 109.46944 * 290.98660 * 5 4 2 37 37 H 1.08993 * 109.46862 * 50.98563 * 5 4 2 38 38 H 1.08999 * 109.46874 * 273.21892 * 6 4 2 39 39 H 1.08991 * 109.47340 * 33.22398 * 6 4 2 40 40 H 1.09004 * 109.46665 * 153.22605 * 6 4 2 41 41 H 1.09002 * 109.58639 * 151.46564 * 10 9 7 42 42 H 1.09008 * 109.69605 * 31.12311 * 10 9 7 43 43 H 1.08996 * 109.47351 * 184.76390 * 11 10 9 44 44 H 1.09002 * 109.47596 * 64.75397 * 11 10 9 45 45 H 0.97003 * 120.94472 * 0.32030 * 14 12 11 46 46 H 1.08998 * 109.53812 * 340.04743 * 15 14 12 47 47 H 1.09001 * 109.59844 * 219.85161 * 15 14 12 48 48 H 1.09005 * 109.58230 * 181.69285 * 16 15 14 49 49 H 1.08997 * 109.69935 * 61.34470 * 16 15 14 50 50 H 0.97002 * 119.99750 * 179.97438 * 21 20 18 51 51 H 1.09002 * 109.57610 * 345.19122 * 26 17 16 52 52 H 1.09003 * 109.57229 * 105.58261 * 26 17 16 53 53 H 1.09008 * 109.57897 * 170.34372 * 27 9 7 54 54 H 1.09000 * 109.58659 * 290.62237 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5300 0.0000 2.4985 7 6 3.5470 -0.7219 1.2489 8 8 4.1534 -0.2513 0.3099 9 7 4.2209 -1.2453 2.2921 10 6 3.5306 -1.6641 3.5295 11 6 3.4526 -0.4672 4.4796 12 6 4.8376 0.0784 4.7138 13 8 5.6766 -0.6015 5.2660 14 7 5.1391 1.3339 4.3027 15 6 6.5024 1.8328 4.5413 16 6 7.3145 1.7069 3.2505 17 7 7.3293 0.2894 2.8337 18 6 8.2229 -0.6050 3.3598 19 1 8.5815 -0.4788 4.3707 20 6 8.6678 -1.6737 2.5939 21 7 8.3925 -1.7213 1.3077 22 14 9.6572 -3.0445 3.3886 23 1 8.8490 -3.6820 4.4589 24 1 10.0100 -4.0590 2.3632 25 1 10.8999 -2.4818 3.9755 26 6 6.3363 -0.1142 1.8168 27 6 5.6868 -1.4283 2.2551 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 2.0188 -2.7220 2.0476 36 1 0.4519 -2.1680 1.4103 37 1 1.7558 -2.6290 0.2897 38 1 2.2195 0.8021 2.7618 39 1 0.5440 0.4193 2.2989 40 1 1.4634 -0.7077 3.3249 41 1 4.0887 -2.4714 4.0039 42 1 2.5240 -2.0073 3.2905 43 1 3.0214 -0.7844 5.4290 44 1 2.8267 0.3078 4.0371 45 1 4.4748 1.8880 3.8639 46 1 6.9740 1.2431 5.3274 47 1 6.4610 2.8787 4.8453 48 1 8.3352 2.0466 3.4264 49 1 6.8574 2.3130 2.4683 50 1 8.7038 -2.4680 0.7724 51 1 5.5726 0.6581 1.7253 52 1 6.8332 -0.2548 0.8568 53 1 6.0462 -1.7002 3.2477 54 1 5.9388 -2.2172 1.5464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070965788.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:14 Heat of formation + Delta-G solvation = -40.556131 kcal Electronic energy + Delta-G solvation = -34642.511827 eV Core-core repulsion = 30615.509585 eV Total energy + Delta-G solvation = -4027.002242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95992 -40.31169 -38.13276 -37.31429 -36.97475 -35.31528 -33.24527 -32.54345 -31.87862 -30.49051 -28.65569 -28.43246 -27.54172 -26.39123 -25.13796 -24.39319 -23.65144 -22.00139 -21.17696 -20.91979 -19.27285 -18.45130 -17.85400 -17.69200 -17.39873 -16.74390 -16.51323 -16.36818 -15.69589 -15.67189 -15.34289 -15.23666 -14.95293 -14.73738 -14.63979 -14.33838 -14.29252 -14.02053 -13.77919 -13.40682 -13.33711 -13.08809 -13.05759 -12.91583 -12.77921 -12.72456 -12.65187 -12.41156 -12.36491 -12.18835 -12.05236 -11.86218 -11.80965 -11.74555 -11.59471 -11.53657 -11.27761 -11.16335 -10.68343 -10.43743 -10.17855 -9.86091 -9.47735 -8.48898 -7.68311 -5.27204 1.40294 1.42485 1.49163 1.83075 1.96707 2.17780 2.52302 2.65661 3.37562 3.48755 3.69850 3.78168 3.91596 3.94394 4.10643 4.20931 4.33045 4.39825 4.45114 4.49422 4.56923 4.58549 4.64813 4.68817 4.72552 4.75503 4.76942 4.83669 4.86407 4.89914 4.96278 4.98801 5.02108 5.06043 5.09659 5.13609 5.24675 5.26787 5.30588 5.31636 5.36461 5.45978 5.64260 5.68957 5.70417 5.79192 5.83739 5.91924 6.40502 6.75712 6.88483 7.21945 7.43190 7.67668 7.89940 8.48082 9.25626 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.004935 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.354224 B = 5672.486741 C = 6134.314562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.149 4.149 6 C -0.161 4.161 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.614 5.614 10 C 0.102 3.898 11 C -0.172 4.172 12 C 0.510 3.490 13 O -0.572 6.572 14 N -0.715 5.715 15 C 0.102 3.898 16 C 0.120 3.880 17 N -0.600 5.600 18 C -0.215 4.215 19 H 0.049 0.951 20 C -0.045 4.045 21 N -0.928 5.928 22 Si 0.947 3.053 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.201 3.799 27 C 0.141 3.859 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.406 0.594 46 H 0.055 0.945 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.048 0.952 50 H 0.241 0.759 51 H 0.039 0.961 52 H 0.004 0.996 53 H 0.077 0.923 54 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 5.704 4.592 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.210 4.210 4 C -0.071 4.071 5 C -0.205 4.205 6 C -0.217 4.217 7 C 0.303 3.697 8 O -0.452 6.452 9 N -0.347 5.347 10 C -0.021 4.021 11 C -0.212 4.212 12 C 0.298 3.702 13 O -0.450 6.450 14 N -0.367 5.367 15 C -0.025 4.025 16 C -0.007 4.007 17 N -0.324 5.324 18 C -0.347 4.347 19 H 0.067 0.933 20 C -0.241 4.241 21 N -0.575 5.575 22 Si 0.777 3.223 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.203 1.203 26 C 0.076 3.924 27 C 0.018 3.982 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.242 0.758 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.022 0.978 53 H 0.096 0.904 54 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -22.142 5.354 4.364 23.194 hybrid contribution 1.553 -0.911 -0.419 1.849 sum -20.588 4.443 3.945 21.429 Atomic orbital electron populations 1.21953 0.92325 1.02817 1.02840 1.20874 0.96996 0.95704 0.95189 1.21976 1.01353 0.95900 1.01801 1.20815 0.88223 0.98848 0.99197 1.22133 1.03603 0.92659 1.02146 1.22728 1.02849 1.00758 0.95331 1.21353 0.91172 0.76346 0.80783 1.90662 1.71424 1.46296 1.36845 1.48986 1.07525 1.62159 1.16038 1.22348 1.00243 0.95945 0.83533 1.22851 0.94022 1.00871 1.03457 1.21215 0.90623 0.81349 0.77051 1.90722 1.51876 1.58176 1.44260 1.45993 1.13359 1.15897 1.61488 1.22000 0.83244 0.98909 0.98324 1.21674 0.98044 0.85501 0.95461 1.44660 1.35919 1.04469 1.47326 1.18857 1.16868 1.04824 0.94108 0.93341 1.25642 1.00775 1.02373 0.95267 1.70191 1.50501 1.31426 1.05354 0.85643 0.79430 0.80110 0.77164 1.21393 1.22181 1.20310 1.20743 0.88123 0.92494 0.91058 1.21896 0.77647 0.98051 1.00655 0.90235 0.92539 0.91429 0.93885 0.92984 0.91251 0.93976 0.91341 0.87729 0.93768 0.92166 0.88351 0.88948 0.91709 0.84609 0.85247 0.85630 0.75843 0.92667 0.88375 0.93673 0.93322 0.94927 0.94321 0.97775 0.90437 0.97027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.58 71.98 0.62 -1.24 16 2 C -0.07 -1.46 1.90 -10.79 -0.02 -1.48 16 3 C -0.15 -3.57 8.63 71.98 0.62 -2.95 16 4 C -0.07 -1.41 0.30 -52.92 -0.02 -1.42 16 5 C -0.15 -2.54 7.47 71.98 0.54 -2.00 16 6 C -0.16 -2.07 5.47 71.99 0.39 -1.68 16 7 C 0.51 17.11 5.48 87.66 0.48 17.59 16 8 O -0.57 -24.92 11.86 -3.03 -0.04 -24.96 16 9 N -0.61 -21.39 2.43 -815.30 -1.98 -23.37 16 10 C 0.10 2.56 4.69 86.14 0.40 2.97 16 11 C -0.17 -3.70 5.25 29.85 0.16 -3.54 16 12 C 0.51 16.88 4.72 87.54 0.41 17.30 16 13 O -0.57 -25.38 14.88 -3.04 -0.05 -25.42 16 14 N -0.72 -21.23 4.71 -460.67 -2.17 -23.40 16 15 C 0.10 3.41 6.58 86.27 0.57 3.97 16 16 C 0.12 4.94 6.08 86.14 0.52 5.47 16 17 N -0.60 -30.83 2.26 -695.53 -1.57 -32.40 16 18 C -0.22 -12.37 8.36 84.03 0.70 -11.67 16 19 H 0.05 2.88 7.85 -2.91 -0.02 2.85 16 20 C -0.05 -2.68 4.53 84.86 0.38 -2.30 16 21 N -0.93 -57.86 10.04 21.65 0.22 -57.64 16 22 Si 0.95 48.57 29.57 68.60 2.03 50.60 16 23 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 25 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 26 C 0.20 10.37 3.51 86.14 0.30 10.67 16 27 C 0.14 6.83 3.91 86.13 0.34 7.17 16 28 H 0.08 0.72 6.00 -2.39 -0.01 0.71 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.74 6.64 -2.39 -0.02 0.73 16 31 H 0.04 1.17 8.06 -2.39 -0.02 1.16 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.26 7.09 -2.39 -0.02 1.24 16 34 H 0.04 1.35 5.64 -2.38 -0.01 1.34 16 35 H 0.07 1.16 5.27 -2.39 -0.01 1.15 16 36 H 0.10 1.05 6.92 -2.38 -0.02 1.03 16 37 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 38 H 0.06 0.89 5.75 -2.39 -0.01 0.87 16 39 H 0.10 0.80 5.56 -2.39 -0.01 0.78 16 40 H 0.09 0.83 4.74 -2.38 -0.01 0.82 16 41 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 42 H 0.14 2.25 3.09 -2.38 -0.01 2.24 16 43 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.13 1.93 3.75 -2.39 -0.01 1.92 16 45 H 0.41 9.38 8.70 -92.71 -0.81 8.57 16 46 H 0.05 2.23 7.02 -2.39 -0.02 2.21 16 47 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.04 1.89 8.13 -2.38 -0.02 1.87 16 49 H 0.05 1.89 7.77 -2.39 -0.02 1.87 16 50 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.04 1.87 5.79 -2.39 -0.01 1.86 16 52 H 0.00 0.27 6.67 -2.39 -0.02 0.26 16 53 H 0.08 4.16 4.58 -2.38 -0.01 4.15 16 54 H 0.01 0.65 7.58 -2.39 -0.02 0.63 16 Total: -1.00 -82.72 371.96 2.98 -79.74 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.13 Total: 19.98 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: 6.41 Total: 36.87 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -5.50 Total: -136.81 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.08 Total: -50.38 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -82.72 2.98 -79.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070965788.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.187 kcal (2) G-P(sol) polarization free energy of solvation -82.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds