Wall clock time and date at job start Sat Apr 11 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46571 * 2 1 4 4 C 1.53001 * 109.47097 * 60.00401 * 3 2 1 5 5 C 1.52996 * 109.47386 * 299.99939 * 3 2 1 6 6 C 1.53002 * 109.47044 * 180.02562 * 3 2 1 7 7 C 1.50697 * 109.47431 * 180.02562 * 6 3 2 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47288 * 89.99691 * 23 21 19 25 25 H 1.48501 * 109.46900 * 209.99506 * 23 21 19 26 26 H 1.48497 * 109.46809 * 329.99423 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.09000 * 109.47204 * 299.99359 * 1 2 3 29 29 H 1.08997 * 109.47646 * 59.99731 * 1 2 3 30 30 H 1.09009 * 109.46731 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47204 * 240.00641 * 2 1 3 32 32 H 1.08997 * 109.47646 * 120.00269 * 2 1 3 33 33 H 1.09002 * 109.47266 * 179.97438 * 4 3 2 34 34 H 1.08991 * 109.47126 * 300.00094 * 4 3 2 35 35 H 1.09006 * 109.46958 * 59.99589 * 4 3 2 36 36 H 1.09000 * 109.47522 * 300.00053 * 5 3 2 37 37 H 1.08999 * 109.46971 * 60.00553 * 5 3 2 38 38 H 1.09002 * 109.46939 * 180.02562 * 5 3 2 39 39 H 1.09005 * 109.47358 * 59.99831 * 6 3 2 40 40 H 1.09006 * 109.47182 * 300.00516 * 6 3 2 41 41 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 42 42 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 43 43 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 44 44 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 45 45 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 46 46 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 47 47 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 48 48 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 49 49 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 50 50 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 51 51 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 52 52 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 53 53 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 54 54 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 1.5298 2.1638 1.2493 5 6 1.5298 2.1638 -1.2492 6 6 3.5698 1.4427 -0.0006 7 6 4.0721 2.8635 0.0000 8 8 3.2839 3.7853 0.0013 9 7 5.3971 3.1098 0.0001 10 6 5.8854 4.4911 0.0013 11 6 7.4155 4.4912 0.0005 12 6 8.0313 5.8950 -0.1211 13 6 9.0782 5.4392 0.9090 14 7 9.4197 6.4713 1.8970 15 6 10.7482 6.2279 2.4747 16 6 11.0628 7.3039 3.4818 17 8 10.2592 8.1864 3.6975 18 7 12.2372 7.2856 4.1429 19 6 12.5233 8.2641 5.0595 20 1 11.8077 9.0499 5.2515 21 6 13.7338 8.2450 5.7414 22 7 14.6042 7.2886 5.5081 23 14 14.1237 9.5788 6.9898 24 1 13.6456 9.1567 8.3309 25 1 15.5914 9.8007 7.0348 26 1 13.4443 10.8391 6.5961 27 6 8.0334 4.4282 1.4102 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 3.1913 1.2496 34 1 0.4399 2.1636 1.2494 35 1 1.8933 1.6498 2.1393 36 1 1.8932 1.6501 -2.1392 37 1 0.4398 2.1638 -1.2491 38 1 1.8935 3.1914 -1.2494 39 1 3.9329 0.9290 -0.8909 40 1 3.9336 0.9287 0.8891 41 1 6.0276 2.3727 -0.0006 42 1 5.5222 5.0041 0.8917 43 1 5.5219 5.0058 -0.8882 44 1 7.8384 3.7671 -0.6958 45 1 7.3799 6.6904 0.2409 46 1 8.4499 6.1044 -1.1055 47 1 9.9568 4.9739 0.4621 48 1 8.7166 6.5280 2.6185 49 1 10.7577 5.2557 2.9673 50 1 11.4969 6.2411 1.6826 51 1 12.8798 6.5796 3.9707 52 1 15.4494 7.2754 5.9839 53 1 8.4535 3.4543 1.6613 54 1 7.3826 4.8234 2.1902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100362234.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:23 Heat of formation + Delta-G solvation = -96.999730 kcal Electronic energy + Delta-G solvation = -28775.736384 eV Core-core repulsion = 24746.286563 eV Total energy + Delta-G solvation = -4029.449820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25861 -40.48489 -39.78532 -38.11188 -36.18239 -35.73248 -34.39302 -33.23937 -31.81085 -29.90735 -28.53292 -28.13014 -27.36136 -26.54196 -25.75562 -24.66301 -22.48695 -21.62177 -21.21400 -20.38001 -19.85361 -19.47678 -17.95295 -17.71839 -17.07009 -16.87618 -16.60631 -16.35079 -16.17719 -15.88693 -15.75329 -15.63976 -15.35703 -15.08983 -14.93998 -14.50099 -14.26075 -13.93232 -13.84230 -13.53144 -13.51817 -13.33218 -13.06514 -12.98303 -12.86705 -12.75063 -12.66941 -12.62898 -12.42790 -12.18939 -12.13048 -11.91006 -11.86735 -11.73632 -11.52131 -11.48110 -11.33579 -11.30879 -11.25046 -10.37987 -10.31351 -10.01808 -9.95338 -9.19757 -8.47163 -5.95908 1.37630 1.41596 1.54327 1.74569 2.05203 2.28109 2.30455 2.97848 3.20203 3.50739 3.61073 3.65607 3.76869 3.86675 3.95568 3.96699 4.06707 4.23557 4.32058 4.36683 4.42996 4.46745 4.52710 4.52985 4.61031 4.67320 4.70172 4.74921 4.80734 4.86666 4.88685 4.89638 4.94927 4.95438 5.12289 5.12927 5.15644 5.20842 5.24685 5.25973 5.29704 5.38190 5.40594 5.46876 5.57463 5.61002 5.77409 5.94611 6.21163 6.43106 6.60296 6.66603 7.12453 7.40089 7.56093 8.11875 8.70145 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.001416 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.441133 B =19762.747684 C =20127.520261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.046 4.046 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.128 4.128 7 C 0.504 3.496 8 O -0.571 6.571 9 N -0.720 5.720 10 C 0.136 3.864 11 C -0.100 4.100 12 C -0.120 4.120 13 C 0.061 3.939 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.158 4.158 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.415 0.585 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.122 0.878 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.112 0.888 48 H 0.343 0.657 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.083 0.917 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 -21.252 -15.297 32.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.047 4.047 4 C -0.210 4.210 5 C -0.208 4.208 6 C -0.168 4.168 7 C 0.292 3.708 8 O -0.451 6.451 9 N -0.372 5.372 10 C 0.011 3.989 11 C -0.119 4.119 12 C -0.159 4.159 13 C -0.049 4.049 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.197 4.197 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.251 0.749 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.140 0.860 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.130 0.870 48 H 0.162 0.838 49 H 0.085 0.915 50 H 0.123 0.877 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.359 -19.587 -15.534 32.240 hybrid contribution 0.682 -0.277 1.335 1.525 sum -19.677 -19.863 -14.199 31.358 Atomic orbital electron populations 1.21884 0.95999 1.01740 1.01799 1.21557 0.96070 0.94380 1.02666 1.20283 0.92851 0.95822 0.95717 1.22097 1.00873 1.01255 0.96743 1.22083 1.00852 1.01263 0.96620 1.21827 0.96543 0.92244 1.06182 1.21270 0.82046 0.92620 0.74851 1.90604 1.55620 1.48217 1.50656 1.46004 1.07142 1.09067 1.75011 1.21192 0.93537 0.83198 1.00927 1.22579 0.92526 0.98860 0.97910 1.23038 0.97209 0.96124 0.99522 1.23214 0.97317 0.90529 0.93797 1.60031 1.02629 1.48590 1.19439 1.21565 0.93637 0.95010 0.96349 1.21011 0.82605 0.89055 0.85119 1.90492 1.49933 1.41154 1.69729 1.41929 1.16459 1.26160 1.36403 1.19668 1.02646 1.06582 1.17717 0.90502 1.26009 0.94863 1.00116 1.00063 1.69664 1.09238 1.33668 1.43412 0.84945 0.77711 0.77819 0.77962 1.19600 1.19408 1.19941 1.23792 0.98425 1.00733 0.96795 0.93017 0.92762 0.92173 0.90916 0.91256 0.92621 0.92851 0.93041 0.92625 0.92894 0.92547 0.86641 0.87134 0.74858 0.93499 0.92353 0.85982 0.91065 0.90171 0.86974 0.83769 0.91458 0.87738 0.76908 0.91263 0.89835 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.21 71.98 0.66 -0.88 16 2 C -0.11 -0.97 4.99 30.59 0.15 -0.82 16 3 C -0.05 -0.59 0.54 -52.18 -0.03 -0.61 16 4 C -0.15 -2.54 7.82 71.98 0.56 -1.97 16 5 C -0.15 -2.33 7.82 71.98 0.56 -1.77 16 6 C -0.13 -1.25 4.77 29.85 0.14 -1.11 16 7 C 0.50 8.35 7.24 87.66 0.63 8.98 16 8 O -0.57 -14.37 11.35 -3.04 -0.03 -14.40 16 9 N -0.72 -9.11 5.56 -463.06 -2.57 -11.68 16 10 C 0.14 2.21 5.51 86.38 0.48 2.69 16 11 C -0.10 -1.31 3.76 -10.18 -0.04 -1.35 16 12 C -0.12 -2.22 7.44 31.12 0.23 -1.99 16 13 C 0.06 1.27 4.16 45.44 0.19 1.46 16 14 N -0.68 -20.91 6.24 -492.86 -3.07 -23.98 16 15 C 0.07 2.23 6.02 85.56 0.52 2.75 16 16 C 0.43 20.82 7.82 87.66 0.69 21.51 16 17 O -0.63 -35.37 15.78 -3.07 -0.05 -35.42 16 18 N -0.57 -29.46 5.29 -306.99 -1.62 -31.09 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 23 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.16 -2.59 7.27 31.21 0.23 -2.37 16 28 H 0.05 0.57 6.43 -2.39 -0.02 0.55 16 29 H 0.05 0.57 6.43 -2.39 -0.02 0.55 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 1.27 5.51 -2.39 -0.01 1.26 16 34 H 0.05 0.86 6.43 -2.39 -0.02 0.84 16 35 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.80 6.43 -2.39 -0.02 0.78 16 38 H 0.06 1.21 5.51 -2.39 -0.01 1.20 16 39 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.41 2.60 8.47 -92.71 -0.79 1.82 16 42 H 0.05 0.99 7.85 -2.39 -0.02 0.97 16 43 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.11 1.99 7.88 -2.39 -0.02 1.97 16 48 H 0.34 11.47 7.91 -89.69 -0.71 10.76 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 52 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 53 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.07 1.41 7.59 -2.39 -0.02 1.39 16 Total: -1.00 -73.14 421.43 -0.10 -73.24 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -1.31 Total: 41.41 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.26 Total: 5.94 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.99 Total: -115.86 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.08 Total: -49.82 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.14 -0.10 -73.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100362234.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.764 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds