Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47044 * 119.99663 * 2 1 3 5 5 C 1.53009 * 109.47108 * 60.00146 * 4 2 1 6 6 C 1.53007 * 109.47101 * 300.00485 * 4 2 1 7 7 C 1.50697 * 109.47431 * 180.02562 * 4 2 1 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 4 2 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 4 2 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47354 * 59.99469 * 23 21 19 25 25 H 1.48505 * 109.46991 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46967 * 299.99256 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08997 * 109.47355 * 299.99954 * 1 2 3 29 29 H 1.08999 * 109.46613 * 60.00128 * 1 2 3 30 30 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47298 * 239.99497 * 2 1 3 32 32 H 1.09006 * 109.46958 * 59.99589 * 3 2 1 33 33 H 1.09002 * 109.47266 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47126 * 300.00094 * 3 2 1 35 35 H 1.08997 * 109.46787 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46370 * 299.99967 * 5 4 2 37 37 H 1.08997 * 109.46819 * 59.99906 * 5 4 2 38 38 H 1.08997 * 109.46707 * 299.99662 * 6 4 2 39 39 H 1.08995 * 109.47474 * 59.99796 * 6 4 2 40 40 H 1.09005 * 109.46740 * 180.02562 * 6 4 2 41 41 H 0.96996 * 120.00586 * 0.02562 * 9 7 4 42 42 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 43 43 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 44 44 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 45 45 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 46 46 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 47 47 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 48 48 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 49 49 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 50 50 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 51 51 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 52 52 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 53 53 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 54 54 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1638 1.2494 6 6 1.5299 0.0001 2.4985 7 6 3.5470 -0.7207 1.2497 8 8 4.1534 -0.1948 0.3405 9 7 4.2208 -1.3037 2.2609 10 6 5.6858 -1.3027 2.2616 11 6 6.1958 -2.0240 3.5108 12 6 7.7246 -2.1858 3.5478 13 6 7.6437 -1.8623 5.0490 14 7 8.7306 -0.9955 5.5236 15 6 8.9438 -1.1613 6.9675 16 6 10.0632 -0.2579 7.4170 17 8 10.6275 0.4544 6.6136 18 7 10.4373 -0.2414 8.7117 19 6 11.4552 0.5808 9.1208 20 1 11.9576 1.2150 8.4054 21 6 11.8405 0.5982 10.4556 22 7 11.2289 -0.1731 11.3261 23 14 13.2280 1.7180 11.0128 24 1 12.8708 3.1302 10.7240 25 1 13.4432 1.5508 12.4726 26 1 14.4728 1.3635 10.2848 27 6 6.3423 -1.1043 4.7379 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.8930 -2.6774 2.1396 36 1 0.4400 -2.1636 1.2493 37 1 1.8934 -2.6776 0.3594 38 1 1.8932 1.0277 2.4985 39 1 0.4399 0.0001 2.4985 40 1 1.8936 -0.5135 3.3886 41 1 3.7358 -1.7239 2.9882 42 1 6.0484 -0.2748 2.2616 43 1 6.0499 -1.8163 1.3717 44 1 5.6540 -2.9469 3.7174 45 1 8.2575 -1.4329 2.9670 46 1 8.0615 -3.2008 3.3374 47 1 7.4978 -2.7408 5.6777 48 1 8.5497 -0.0299 5.2934 49 1 8.0303 -0.9009 7.5020 50 1 9.2058 -2.1979 7.1794 51 1 9.9858 -0.8108 9.3543 52 1 11.4981 -0.1613 12.2580 53 1 5.5641 -1.2469 5.4876 54 1 6.4981 -0.0563 4.4820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100365667.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -96.600169 kcal Electronic energy + Delta-G solvation = -29292.386646 eV Core-core repulsion = 25262.954152 eV Total energy + Delta-G solvation = -4029.432494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55194 -40.51903 -39.79145 -37.80093 -36.23515 -35.83625 -34.49729 -33.24473 -32.32279 -29.27925 -28.75318 -27.79703 -27.51040 -26.55342 -25.80595 -24.72675 -22.67925 -21.97149 -21.27738 -20.57950 -19.89695 -19.52234 -17.91237 -17.62344 -17.24914 -16.88439 -16.65580 -16.37224 -16.16047 -15.83215 -15.74459 -15.45296 -15.30650 -15.05401 -14.89334 -14.45478 -14.17047 -14.01252 -13.57278 -13.52580 -13.51200 -13.33910 -13.08801 -13.02534 -12.97948 -12.84398 -12.78723 -12.64924 -12.55237 -12.44020 -12.15003 -12.13115 -11.98210 -11.83242 -11.52397 -11.49238 -11.41474 -11.32490 -11.25974 -10.45069 -10.32650 -10.02077 -10.01476 -9.20105 -8.46960 -5.95838 1.39564 1.41522 1.52384 1.67807 2.05291 2.21901 2.29428 2.97459 3.20253 3.49481 3.57399 3.62227 3.64557 3.79945 3.86803 3.94826 4.05985 4.19354 4.29378 4.35458 4.36047 4.42319 4.45496 4.52567 4.58783 4.60624 4.72185 4.76186 4.82111 4.84785 4.88300 4.89712 4.91460 4.93536 4.98375 5.07563 5.12875 5.14485 5.15823 5.22698 5.27590 5.34260 5.39391 5.41326 5.50812 5.57683 5.63576 5.94421 6.20907 6.42698 6.59735 6.60303 7.12312 7.31264 7.56048 8.11862 8.70049 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.001552 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.798978 B =18040.686863 C =18288.292929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.160 4.160 4 C -0.073 4.073 5 C -0.141 4.141 6 C -0.144 4.144 7 C 0.513 3.487 8 O -0.580 6.580 9 N -0.714 5.714 10 C 0.134 3.866 11 C -0.100 4.100 12 C -0.120 4.120 13 C 0.062 3.938 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.158 4.158 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.343 0.657 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.084 0.916 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.788 -8.107 -15.865 32.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.217 4.217 4 C -0.076 4.076 5 C -0.198 4.198 6 C -0.201 4.201 7 C 0.301 3.699 8 O -0.460 6.460 9 N -0.366 5.366 10 C 0.010 3.990 11 C -0.119 4.119 12 C -0.159 4.159 13 C -0.048 4.048 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.162 0.838 49 H 0.086 0.914 50 H 0.123 0.877 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.424 -7.739 -16.967 31.530 hybrid contribution 0.101 0.846 1.141 1.424 sum -25.323 -6.893 -15.826 30.647 Atomic orbital electron populations 1.21955 0.93028 1.02831 1.02493 1.20878 0.96693 0.95591 0.95852 1.22085 1.01903 0.96242 1.01448 1.20840 0.89167 0.99141 0.98461 1.21944 1.03197 0.91960 1.02682 1.22000 1.03173 0.99974 0.94967 1.21196 0.91082 0.76582 0.81030 1.90636 1.71462 1.46194 1.37742 1.45945 1.07037 1.58295 1.25331 1.21235 0.79796 0.99762 0.98173 1.22583 0.96636 0.99618 0.93054 1.23036 0.94651 1.02451 0.95716 1.23209 0.88106 0.96780 0.96699 1.60030 1.45548 1.12447 1.12676 1.21566 0.95420 0.99649 0.89925 1.21008 0.87809 0.86698 0.82275 1.90492 1.59658 1.47315 1.53873 1.41925 1.32498 1.38629 1.07890 1.19635 1.12705 1.20424 0.93951 0.90486 1.26017 1.00940 0.99026 0.95108 1.69658 1.42702 1.39544 1.04023 0.85000 0.77815 0.78162 0.77411 1.19778 1.19322 1.19826 1.23795 0.98883 0.98648 0.98421 0.91335 0.92616 0.91081 0.92701 0.92291 0.92962 0.92999 0.90636 0.89271 0.93059 0.93084 0.89265 0.90879 0.74944 0.93442 0.92313 0.85922 0.91073 0.90096 0.86895 0.83772 0.91441 0.87719 0.76901 0.91252 0.89758 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.49 71.98 0.61 -0.69 16 2 C -0.07 -1.03 1.92 -10.79 -0.02 -1.05 16 3 C -0.16 -2.86 8.52 71.98 0.61 -2.25 16 4 C -0.07 -0.89 0.43 -52.92 -0.02 -0.91 16 5 C -0.14 -1.05 8.02 71.99 0.58 -0.47 16 6 C -0.14 -1.27 7.66 71.98 0.55 -0.72 16 7 C 0.51 9.68 6.19 87.66 0.54 10.22 16 8 O -0.58 -16.34 13.66 -3.04 -0.04 -16.38 16 9 N -0.71 -10.10 5.34 -463.06 -2.47 -12.58 16 10 C 0.13 2.31 5.51 86.38 0.48 2.79 16 11 C -0.10 -1.35 3.76 -10.18 -0.04 -1.39 16 12 C -0.12 -2.23 7.44 31.12 0.23 -2.00 16 13 C 0.06 1.28 4.16 45.44 0.19 1.47 16 14 N -0.68 -20.95 6.24 -492.86 -3.07 -24.02 16 15 C 0.07 2.23 6.02 85.56 0.52 2.75 16 16 C 0.43 20.83 7.82 87.66 0.69 21.52 16 17 O -0.63 -35.41 15.78 -3.07 -0.05 -35.46 16 18 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 23 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C -0.16 -2.62 7.27 31.21 0.23 -2.39 16 28 H 0.07 0.49 6.43 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.45 6.43 -2.39 -0.02 0.44 16 31 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.06 0.92 6.43 -2.38 -0.02 0.90 16 33 H 0.05 1.28 5.51 -2.39 -0.01 1.27 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.33 7.57 -2.39 -0.02 0.32 16 36 H 0.09 0.39 6.43 -2.39 -0.02 0.37 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.62 6.43 -2.39 -0.02 0.60 16 39 H 0.09 0.50 6.43 -2.39 -0.02 0.48 16 40 H 0.07 0.45 7.56 -2.38 -0.02 0.43 16 41 H 0.41 3.30 7.31 -92.71 -0.68 2.63 16 42 H 0.05 1.05 7.85 -2.39 -0.02 1.03 16 43 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.11 1.99 7.88 -2.39 -0.02 1.98 16 48 H 0.34 11.51 7.91 -89.69 -0.71 10.80 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 52 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 53 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.07 1.42 7.59 -2.39 -0.02 1.40 16 Total: -1.00 -74.26 419.19 0.27 -74.00 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -1.20 Total: 41.33 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.42 Total: 8.21 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.89 Total: -116.80 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.09 Total: -51.84 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.26 0.27 -74.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100365667.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.605 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds