Wall clock time and date at job start Sat Apr 11 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46571 * 2 1 4 4 C 1.53002 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47108 * 60.00146 * 4 3 2 6 6 C 1.53007 * 109.47101 * 300.00485 * 4 3 2 7 7 C 1.50697 * 109.47431 * 180.02562 * 4 3 2 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 4 3 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47288 * 89.99691 * 23 21 19 25 25 H 1.48501 * 109.46900 * 209.99506 * 23 21 19 26 26 H 1.48497 * 109.46809 * 329.99423 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08997 * 109.47646 * 59.99731 * 1 2 3 29 29 H 1.09009 * 109.46731 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47204 * 299.99359 * 1 2 3 31 31 H 1.09000 * 109.47204 * 240.00641 * 2 1 3 32 32 H 1.08997 * 109.47646 * 120.00269 * 2 1 3 33 33 H 1.09005 * 109.47148 * 60.00752 * 3 2 1 34 34 H 1.08995 * 109.47298 * 299.99898 * 3 2 1 35 35 H 1.08997 * 109.46787 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.46370 * 299.99967 * 5 4 3 37 37 H 1.08997 * 109.46819 * 59.99906 * 5 4 3 38 38 H 1.08997 * 109.46707 * 299.99662 * 6 4 3 39 39 H 1.09002 * 109.47120 * 59.99769 * 6 4 3 40 40 H 1.09005 * 109.46740 * 180.02562 * 6 4 3 41 41 H 0.96996 * 120.00586 * 0.02562 * 9 7 4 42 42 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 43 43 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 44 44 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 45 45 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 46 46 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 47 47 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 48 48 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 49 49 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 50 50 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 51 51 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 52 52 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 53 53 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 54 54 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5698 1.4427 -0.0006 5 6 4.0794 0.7217 -1.2503 6 6 4.0804 0.7212 1.2483 7 6 4.0721 2.8635 0.0000 8 8 3.2839 3.7853 0.0013 9 7 5.3971 3.1098 0.0001 10 6 5.8854 4.4911 0.0013 11 6 7.4155 4.4912 0.0005 12 6 8.0313 5.8950 -0.1211 13 6 9.0782 5.4392 0.9090 14 7 9.4197 6.4713 1.8970 15 6 10.7482 6.2279 2.4747 16 6 11.0628 7.3039 3.4818 17 8 10.2592 8.1864 3.6975 18 7 12.2372 7.2856 4.1429 19 6 12.5233 8.2641 5.0595 20 1 11.8077 9.0499 5.2515 21 6 13.7338 8.2450 5.7414 22 7 14.6042 7.2886 5.5081 23 14 14.1237 9.5788 6.9898 24 1 13.6456 9.1567 8.3309 25 1 15.5914 9.8007 7.0348 26 1 13.4443 10.8391 6.5961 27 6 8.0334 4.4282 1.4102 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 0.8901 34 1 1.6765 1.9564 -0.8899 35 1 5.1694 0.7214 -1.2505 36 1 3.7161 -0.3060 -1.2502 37 1 3.7156 1.2357 -2.1400 38 1 3.7175 1.2349 2.1385 39 1 3.7172 -0.3065 1.2482 40 1 5.1705 0.7217 1.2480 41 1 6.0276 2.3727 -0.0006 42 1 5.5222 5.0041 0.8917 43 1 5.5219 5.0058 -0.8882 44 1 7.8384 3.7671 -0.6958 45 1 7.3799 6.6904 0.2409 46 1 8.4499 6.1044 -1.1055 47 1 9.9568 4.9739 0.4621 48 1 8.7166 6.5280 2.6185 49 1 10.7577 5.2557 2.9673 50 1 11.4969 6.2411 1.6826 51 1 12.8798 6.5796 3.9707 52 1 15.4494 7.2754 5.9839 53 1 8.4535 3.4543 1.6613 54 1 7.3826 4.8234 2.1902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100625740.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:30 Heat of formation + Delta-G solvation = -105.602379 kcal Electronic energy + Delta-G solvation = -28880.925964 eV Core-core repulsion = 24851.103104 eV Total energy + Delta-G solvation = -4029.822859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39462 -40.48279 -39.76993 -37.65909 -36.23781 -35.82684 -34.50412 -33.36250 -33.20507 -29.37226 -28.26464 -27.84748 -27.36355 -26.55565 -25.83402 -24.45207 -22.54323 -21.98311 -21.27879 -20.61741 -19.93045 -19.68029 -17.93390 -17.60465 -17.25015 -16.88308 -16.61964 -16.37657 -16.27618 -15.98534 -15.77604 -15.50834 -15.19738 -15.02559 -14.96937 -14.45727 -14.20374 -13.95644 -13.73827 -13.55618 -13.51893 -13.34927 -13.33506 -13.11403 -12.98866 -12.84152 -12.72219 -12.62177 -12.60830 -12.42728 -12.13462 -11.96768 -11.89149 -11.82098 -11.61892 -11.51761 -11.45547 -11.33475 -11.27389 -10.61301 -10.32841 -10.07786 -10.01747 -9.19933 -8.47152 -5.95872 1.37590 1.41562 1.54270 1.64093 2.05274 2.18898 2.29349 2.97519 3.20219 3.49138 3.57058 3.62010 3.66876 3.76306 3.88393 3.94560 4.05918 4.19935 4.27031 4.27842 4.33455 4.36098 4.44181 4.52732 4.56520 4.60593 4.70811 4.74326 4.79832 4.81379 4.86952 4.88507 4.92959 4.94704 4.95044 5.06349 5.09340 5.13539 5.21310 5.23132 5.23908 5.35842 5.38478 5.40922 5.46756 5.50580 5.53919 5.94571 6.21087 6.42789 6.56379 6.60356 7.12506 7.26340 7.56156 8.11982 8.70150 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.001468 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.808627 B =19069.197572 C =19358.733584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.077 4.077 5 C -0.139 4.139 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.592 6.592 9 N -0.712 5.712 10 C 0.133 3.867 11 C -0.100 4.100 12 C -0.120 4.120 13 C 0.062 3.938 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.159 4.159 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.415 0.585 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.343 0.657 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.084 0.916 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.300 -22.694 -15.305 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.080 4.080 5 C -0.197 4.197 6 C -0.198 4.198 7 C 0.301 3.699 8 O -0.472 6.472 9 N -0.364 5.364 10 C 0.009 3.991 11 C -0.119 4.119 12 C -0.159 4.159 13 C -0.048 4.048 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.198 4.198 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.252 0.748 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.162 0.838 49 H 0.086 0.914 50 H 0.123 0.877 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.103 0.897 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.920 -21.021 -15.541 32.271 hybrid contribution 0.538 -0.050 1.339 1.444 sum -18.382 -21.071 -14.202 31.362 Atomic orbital electron populations 1.21790 0.96018 1.02062 1.01414 1.21654 0.95780 0.95089 1.03308 1.21409 0.92468 0.97884 1.01479 1.20837 0.97057 0.90425 0.99721 1.21939 1.02094 1.01357 0.94283 1.21949 1.02034 1.01408 0.94453 1.21267 0.82283 0.92076 0.74322 1.90685 1.56710 1.48178 1.51639 1.45921 1.06863 1.09170 1.74457 1.21256 0.93854 0.82965 1.01012 1.22586 0.92162 0.99045 0.98085 1.23039 0.97210 0.96007 0.99619 1.23205 0.97308 0.90486 0.93758 1.60028 1.02644 1.48576 1.19444 1.21567 0.93618 0.95015 0.96355 1.21015 0.82602 0.89058 0.85122 1.90493 1.49938 1.41163 1.69732 1.41927 1.16459 1.26158 1.36400 1.19666 1.02644 1.06584 1.17723 0.90518 1.26005 0.94864 1.00111 1.00058 1.69663 1.09236 1.33659 1.43408 0.84948 0.77714 0.77823 0.77969 1.19603 1.19400 1.19955 1.23799 0.98436 1.00843 0.96696 0.93230 0.91583 0.93487 0.90293 0.90618 0.93524 0.93118 0.90557 0.89172 0.93045 0.93559 0.89100 0.90682 0.74791 0.93455 0.92300 0.85833 0.91091 0.90061 0.86853 0.83777 0.91426 0.87704 0.76901 0.91262 0.89698 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.11 5.23 30.59 0.16 -0.95 16 3 C -0.09 -1.40 3.56 30.60 0.11 -1.29 16 4 C -0.08 -0.95 0.64 -52.92 -0.03 -0.99 16 5 C -0.14 -1.02 8.02 71.99 0.58 -0.44 16 6 C -0.14 -1.23 8.02 71.98 0.58 -0.66 16 7 C 0.51 10.04 6.48 87.66 0.57 10.61 16 8 O -0.59 -17.67 15.98 -3.04 -0.05 -17.72 16 9 N -0.71 -10.27 5.34 -463.06 -2.47 -12.74 16 10 C 0.13 2.33 5.51 86.38 0.48 2.81 16 11 C -0.10 -1.35 3.76 -10.18 -0.04 -1.39 16 12 C -0.12 -2.24 7.44 31.12 0.23 -2.01 16 13 C 0.06 1.29 4.16 45.44 0.19 1.48 16 14 N -0.68 -20.91 6.24 -492.86 -3.07 -23.99 16 15 C 0.07 2.23 6.02 85.56 0.52 2.75 16 16 C 0.43 20.82 7.82 87.66 0.69 21.50 16 17 O -0.63 -35.41 15.78 -3.07 -0.05 -35.46 16 18 N -0.57 -29.45 5.29 -306.99 -1.62 -31.07 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 23 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.16 -2.62 7.27 31.21 0.23 -2.40 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.52 6.43 -2.39 -0.02 0.51 16 32 H 0.08 0.55 6.43 -2.39 -0.02 0.54 16 33 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.08 0.31 7.57 -2.39 -0.02 0.30 16 36 H 0.09 0.36 6.43 -2.39 -0.02 0.35 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 39 H 0.09 0.48 6.43 -2.39 -0.02 0.46 16 40 H 0.07 0.44 7.56 -2.38 -0.02 0.42 16 41 H 0.41 3.29 7.31 -92.71 -0.68 2.61 16 42 H 0.05 1.06 7.85 -2.39 -0.02 1.04 16 43 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.11 1.99 7.88 -2.39 -0.02 1.97 16 48 H 0.34 11.50 7.91 -89.69 -0.71 10.79 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 52 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 53 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.07 1.42 7.59 -2.39 -0.02 1.40 16 Total: -1.00 -75.47 428.17 0.07 -75.40 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -1.21 Total: 39.95 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.24 Total: 9.59 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -6.89 Total: -116.88 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.10 Total: -53.18 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.47 0.07 -75.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100625740.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.201 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds