Wall clock time and date at job start Sat Apr 11 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47515 * 2 1 4 4 C 1.53001 * 109.47040 * 239.99858 * 2 1 3 5 5 C 1.53004 * 109.47427 * 119.99752 * 2 1 3 6 6 C 1.53002 * 109.47044 * 59.99734 * 5 2 1 7 7 C 1.50697 * 109.47431 * 180.02562 * 6 5 2 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47354 * 59.99469 * 23 21 19 25 25 H 1.48505 * 109.46991 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46967 * 299.99256 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08997 * 109.46723 * 300.00150 * 1 2 3 29 29 H 1.08995 * 109.47333 * 60.00209 * 1 2 3 30 30 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47646 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46731 * 300.00300 * 3 2 1 33 33 H 1.09000 * 109.47204 * 59.99635 * 3 2 1 34 34 H 1.09005 * 109.47026 * 299.99575 * 4 2 1 35 35 H 1.08995 * 109.47112 * 59.99797 * 4 2 1 36 36 H 1.09006 * 109.46958 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.47148 * 300.00421 * 5 2 1 38 38 H 1.08995 * 109.47298 * 179.97438 * 5 2 1 39 39 H 1.09005 * 109.47358 * 59.99831 * 6 5 2 40 40 H 1.09006 * 109.47182 * 300.00516 * 6 5 2 41 41 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 42 42 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 43 43 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 44 44 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 45 45 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 46 46 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 47 47 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 48 48 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 49 49 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 50 50 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 51 51 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 52 52 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 53 53 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 54 54 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2494 7 6 2.0319 -2.8739 2.4801 8 8 2.7285 -2.2842 3.2788 9 7 1.7057 -4.1640 2.6937 10 6 2.1931 -4.8543 3.8905 11 6 1.6832 -6.2968 3.8905 12 6 2.2389 -7.1467 5.0454 13 6 0.8338 -7.7597 5.1662 14 7 0.4000 -7.9682 6.5541 15 6 -0.6297 -9.0129 6.6326 16 6 -1.0493 -9.1978 8.0681 17 8 -0.5410 -8.5250 8.9400 18 7 -1.9895 -10.1106 8.3832 19 6 -2.3717 -10.2785 9.6890 20 1 -1.9191 -9.6794 10.4654 21 6 -3.3413 -11.2192 10.0137 22 7 -3.8924 -11.9477 9.0691 23 14 -3.8616 -11.4484 11.7932 24 1 -4.4106 -10.1718 12.3168 25 1 -4.9029 -12.5041 11.8724 26 1 -2.6851 -11.8511 12.6049 27 6 0.2966 -6.4613 4.5412 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -0.2074 2.1393 38 1 3.1300 -0.7216 1.2490 39 1 1.8933 -2.6776 0.3594 40 1 0.4400 -2.1637 1.2494 41 1 1.1483 -4.6356 2.0552 42 1 1.8294 -4.3400 4.7800 43 1 3.2832 -4.8546 3.8912 44 1 1.7689 -6.7761 2.9153 45 1 2.5359 -6.5606 5.9151 46 1 3.0015 -7.8607 4.7345 47 1 0.6859 -8.6395 4.5399 48 1 0.0725 -7.1062 6.9639 49 1 -1.4934 -8.7173 6.0371 50 1 -0.2267 -9.9498 6.2480 51 1 -2.3963 -10.6484 7.6858 52 1 -4.5691 -12.6048 9.2958 53 1 -0.5078 -6.6224 3.8236 54 1 0.0635 -5.6883 5.2734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100769394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:37 Heat of formation + Delta-G solvation = -107.723068 kcal Electronic energy + Delta-G solvation = -28372.554980 eV Core-core repulsion = 24342.640160 eV Total energy + Delta-G solvation = -4029.914819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.06109 -40.39302 -39.74147 -38.54384 -36.21482 -35.77592 -34.40300 -33.23887 -32.23248 -29.32341 -28.11910 -28.09343 -27.81748 -26.55177 -25.90786 -24.92883 -22.45914 -21.58343 -21.19976 -20.36136 -19.84612 -19.45080 -18.10072 -17.72530 -17.10170 -16.87282 -16.81625 -16.35308 -16.27145 -15.85393 -15.62710 -15.46389 -15.22500 -15.02563 -14.94921 -14.52901 -14.25986 -14.11199 -13.80640 -13.54303 -13.51110 -13.36022 -13.33369 -12.98196 -12.84585 -12.71844 -12.66749 -12.60256 -12.51800 -12.43794 -12.13355 -11.99064 -11.88002 -11.54400 -11.50256 -11.47580 -11.39351 -11.37053 -11.26970 -10.77723 -10.32762 -10.05250 -10.01732 -9.19714 -8.46797 -5.95633 1.39654 1.41637 1.52446 1.68348 2.05526 2.24939 2.29702 2.97883 3.20512 3.50512 3.59800 3.64180 3.77915 3.83500 3.93454 3.95701 4.06194 4.13668 4.29168 4.31303 4.35778 4.44553 4.45590 4.52892 4.60930 4.65209 4.70467 4.74178 4.82366 4.84408 4.88460 4.89345 4.94885 4.95757 5.07487 5.10043 5.13978 5.14581 5.19284 5.23846 5.28621 5.39100 5.40874 5.42417 5.53312 5.56989 5.57788 5.94659 6.21273 6.43071 6.60556 6.60956 7.12553 7.31665 7.56293 8.12123 8.70251 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.001364 C = 0.001337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.375283 B =20525.625198 C =20933.160226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.090 4.090 6 C -0.135 4.135 7 C 0.502 3.498 8 O -0.594 6.594 9 N -0.717 5.717 10 C 0.133 3.867 11 C -0.099 4.099 12 C -0.120 4.120 13 C 0.062 3.938 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.159 4.159 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.417 0.583 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.343 0.657 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.084 0.916 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 17.473 -27.468 33.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.202 4.202 5 C -0.128 4.128 6 C -0.175 4.175 7 C 0.290 3.710 8 O -0.475 6.475 9 N -0.369 5.369 10 C 0.009 3.991 11 C -0.118 4.118 12 C -0.159 4.159 13 C -0.048 4.048 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.198 4.198 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.162 0.838 49 H 0.086 0.914 50 H 0.123 0.877 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.103 0.897 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.264 17.719 -26.150 32.918 hybrid contribution -1.360 -0.123 0.500 1.454 sum 7.904 17.596 -25.650 32.093 Atomic orbital electron populations 1.21962 0.93942 1.02585 1.01791 1.20550 0.96144 0.95318 0.94762 1.21884 1.00856 0.95561 1.01821 1.21955 1.00873 1.00871 0.96462 1.21332 1.00238 0.93774 0.97477 1.21857 1.03841 0.96332 0.95427 1.21466 0.79329 0.81946 0.88211 1.90700 1.40368 1.67183 1.49255 1.45963 1.53579 1.11893 1.25477 1.21231 0.98639 0.91795 0.87443 1.22583 0.95917 0.93354 0.99989 1.23043 0.96830 0.98527 0.97537 1.23211 0.96599 0.97590 0.87416 1.60029 1.40626 1.11605 1.18449 1.21566 0.95119 0.98074 0.91795 1.21013 0.82015 0.82641 0.92150 1.90492 1.58614 1.50324 1.51899 1.41922 1.35613 1.34636 1.08750 1.19635 1.20962 1.20566 0.85555 0.90494 1.26006 0.95999 0.95200 1.03812 1.69657 1.28025 1.23808 1.34457 0.85011 0.78084 0.78191 0.77177 1.19767 1.19320 1.19818 1.23798 0.97526 0.97953 1.00499 0.93354 0.92070 0.91291 0.93027 0.91815 0.93278 0.91222 0.92109 0.93036 0.93311 0.92921 0.86219 0.86675 0.74582 0.93522 0.92369 0.85815 0.91100 0.90100 0.86889 0.83773 0.91436 0.87720 0.76903 0.91253 0.89709 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.12 71.98 0.58 -0.58 16 2 C -0.07 -0.64 0.80 -52.18 -0.04 -0.68 16 3 C -0.14 -1.50 8.47 71.98 0.61 -0.89 16 4 C -0.14 -1.02 8.12 71.98 0.58 -0.44 16 5 C -0.09 -1.23 3.56 30.60 0.11 -1.12 16 6 C -0.14 -1.36 4.99 29.85 0.15 -1.21 16 7 C 0.50 9.03 7.83 87.66 0.69 9.71 16 8 O -0.59 -16.98 15.98 -3.04 -0.05 -17.03 16 9 N -0.72 -9.50 5.56 -463.06 -2.57 -12.07 16 10 C 0.13 2.26 5.51 86.38 0.48 2.74 16 11 C -0.10 -1.32 3.76 -10.18 -0.04 -1.36 16 12 C -0.12 -2.24 7.44 31.12 0.23 -2.01 16 13 C 0.06 1.27 4.16 45.44 0.19 1.46 16 14 N -0.68 -20.91 6.24 -492.86 -3.07 -23.99 16 15 C 0.07 2.23 6.02 85.56 0.52 2.75 16 16 C 0.43 20.80 7.82 87.66 0.69 21.49 16 17 O -0.63 -35.38 15.78 -3.07 -0.05 -35.43 16 18 N -0.57 -29.44 5.29 -306.99 -1.62 -31.06 16 19 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.16 -2.60 7.27 31.21 0.23 -2.37 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.39 6.43 -2.39 -0.02 0.38 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.32 6.43 -2.38 -0.02 0.31 16 35 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 38 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 39 H 0.12 0.63 6.43 -2.38 -0.02 0.61 16 40 H 0.12 0.73 6.43 -2.38 -0.02 0.72 16 41 H 0.42 2.60 8.47 -92.71 -0.79 1.81 16 42 H 0.05 1.02 7.85 -2.39 -0.02 1.01 16 43 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.11 1.99 7.88 -2.39 -0.02 1.97 16 48 H 0.34 11.49 7.91 -89.69 -0.71 10.78 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 52 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 53 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.07 1.41 7.59 -2.39 -0.02 1.39 16 Total: -1.00 -75.34 430.74 -0.13 -75.47 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -1.33 Total: 39.23 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.25 Total: 8.87 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -6.99 Total: -116.20 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.10 Total: -52.46 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.34 -0.13 -75.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100769394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.251 kcal (2) G-P(sol) polarization free energy of solvation -75.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds