Wall clock time and date at job start Sat Apr 11 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47311 * 2 1 4 4 C 1.53001 * 109.47102 * 301.55318 * 3 2 1 5 5 C 1.53001 * 109.46838 * 294.97592 * 4 3 2 6 6 C 1.53001 * 109.46742 * 61.54823 * 3 2 1 7 7 C 1.50697 * 109.47042 * 65.00501 * 6 3 2 8 8 O 1.21280 * 120.00302 * 359.97438 * 7 6 3 9 9 N 1.34783 * 120.00038 * 180.02562 * 7 6 3 10 10 C 1.46499 * 119.99837 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46651 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61202 * 175.00181 * 11 10 9 13 13 C 1.53776 * 87.08140 * 139.97850 * 12 11 10 14 14 N 1.46896 * 113.61337 * 219.92969 * 13 12 11 15 15 C 1.46909 * 111.00024 * 203.47373 * 14 13 12 16 16 C 1.50696 * 109.46968 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00582 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99802 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99776 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00564 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99977 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99847 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00286 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47252 * 60.00089 * 23 21 19 25 25 H 1.48503 * 109.47284 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47199 * 300.00063 * 23 21 19 27 27 C 1.53779 * 87.17524 * 334.52630 * 13 12 11 28 28 H 1.09009 * 109.46835 * 301.88755 * 1 2 3 29 29 H 1.09002 * 109.47521 * 61.88128 * 1 2 3 30 30 H 1.08994 * 109.47417 * 181.88807 * 1 2 3 31 31 H 1.08996 * 109.46840 * 240.00338 * 2 1 3 32 32 H 1.08994 * 109.47269 * 119.99843 * 2 1 3 33 33 H 1.08994 * 109.47046 * 181.55122 * 3 2 1 34 34 H 1.08999 * 109.46890 * 54.97194 * 4 3 2 35 35 H 1.08996 * 109.46911 * 174.97281 * 4 3 2 36 36 H 1.09005 * 109.47028 * 305.79825 * 5 4 3 37 37 H 1.08996 * 109.47318 * 65.79877 * 5 4 3 38 38 H 1.09004 * 109.46793 * 185.79958 * 5 4 3 39 39 H 1.08994 * 109.47741 * 305.00023 * 6 3 2 40 40 H 1.09001 * 109.46701 * 185.00082 * 6 3 2 41 41 H 0.97001 * 119.99949 * 359.97438 * 9 7 6 42 42 H 1.09002 * 109.47203 * 60.00086 * 10 9 7 43 43 H 1.09001 * 109.47314 * 299.99471 * 10 9 7 44 44 H 1.08992 * 112.85305 * 43.80976 * 11 10 9 45 45 H 1.09000 * 113.61487 * 25.43020 * 12 11 10 46 46 H 1.09001 * 113.61102 * 254.53127 * 12 11 10 47 47 H 1.09006 * 113.61154 * 89.11490 * 13 12 11 48 48 H 1.00897 * 110.99938 * 79.52528 * 14 13 12 49 49 H 1.08997 * 109.46826 * 300.00016 * 15 14 13 50 50 H 1.08996 * 109.47074 * 59.99968 * 15 14 13 51 51 H 0.96999 * 119.99737 * 359.97438 * 18 16 15 52 52 H 0.96998 * 119.99600 * 180.02562 * 22 21 19 53 53 H 1.08999 * 113.61309 * 140.02188 * 27 13 12 54 54 H 1.09005 * 113.60818 * 270.92583 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.4984 2.1750 -1.2292 5 6 2.0768 1.5417 -2.4962 6 6 1.5621 2.1524 1.2683 7 6 2.1941 1.5061 2.4741 8 8 2.9517 0.5697 2.3330 9 7 1.9165 1.9682 3.7095 10 6 2.5304 1.3395 4.8817 11 6 2.0525 2.0495 6.1500 12 6 2.5444 1.3884 7.4484 13 6 2.7603 2.8087 7.9970 14 7 3.9881 2.9526 8.7905 15 6 3.8847 4.0858 9.7196 16 6 5.1600 4.2021 10.5140 17 8 6.0658 3.4178 10.3252 18 7 5.2937 5.1769 11.4351 19 6 6.4537 5.2823 12.1581 20 1 7.2602 4.5840 11.9900 21 6 6.5918 6.2877 13.1073 22 7 5.6102 7.1371 13.3123 23 14 8.1720 6.4309 14.0931 24 1 9.3136 6.6507 13.1691 25 1 8.0673 7.5762 15.0326 26 1 8.3912 5.1794 14.8616 27 6 2.9130 3.2673 6.5371 28 1 -0.3633 0.5429 0.8727 29 1 -0.3634 0.4843 -0.9064 30 1 -0.3634 -1.0270 0.0339 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.1296 1.4426 -0.0278 34 1 0.4113 2.0980 -1.2483 35 1 1.7875 3.2249 -1.1832 36 1 3.1648 1.5258 -2.4303 37 1 1.7040 0.5223 -2.5957 38 1 1.7739 2.1258 -3.3652 39 1 0.4774 2.0750 1.3413 40 1 1.8494 3.2030 1.2268 41 1 1.3102 2.7169 3.8224 42 1 3.6152 1.4170 4.8092 43 1 2.2431 0.2889 4.9228 44 1 0.9820 2.2542 6.1427 45 1 3.4677 0.8220 7.3274 46 1 1.7700 0.8301 7.9746 47 1 1.8835 3.2224 8.4951 48 1 4.7957 3.0474 8.1931 49 1 3.7234 5.0045 9.1556 50 1 3.0471 3.9242 10.3980 51 1 4.5692 5.8039 11.5863 52 1 5.7068 7.8391 13.9747 53 1 2.4360 4.2248 6.3281 54 1 3.9370 3.2136 6.1674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100794457.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:41 Heat of formation + Delta-G solvation = -104.828121 kcal Electronic energy + Delta-G solvation = -28576.221032 eV Core-core repulsion = 24546.431747 eV Total energy + Delta-G solvation = -4029.789285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13510 -40.43479 -39.75911 -37.97659 -36.18990 -35.74584 -34.39585 -33.23754 -32.10150 -31.18553 -29.15945 -27.77114 -26.55387 -26.01932 -25.39437 -24.30015 -22.49595 -21.64909 -21.22129 -20.41423 -19.89778 -19.78596 -17.98044 -17.69776 -17.20042 -16.89191 -16.81090 -16.41691 -16.34463 -16.17855 -15.89142 -15.47287 -15.39085 -14.89588 -14.74494 -14.57143 -14.25318 -13.93140 -13.70848 -13.56587 -13.51089 -13.49030 -13.33604 -12.98244 -12.89376 -12.81784 -12.76655 -12.60475 -12.43925 -12.25938 -12.13397 -11.96163 -11.87748 -11.53555 -11.50069 -11.38751 -11.32393 -11.26535 -11.20597 -10.59043 -10.32769 -10.01853 -10.00719 -9.19957 -8.46909 -5.95740 1.39557 1.41583 1.52390 1.72178 2.05325 2.26851 2.29884 2.97724 3.20354 3.50520 3.60288 3.64822 3.81071 3.86364 3.96052 3.97212 4.06306 4.22541 4.30440 4.35908 4.42804 4.45509 4.45970 4.52661 4.58573 4.60678 4.64367 4.71134 4.73424 4.80450 4.88140 4.89161 4.94669 4.96802 5.00367 5.11792 5.14340 5.16891 5.23842 5.32563 5.35333 5.38816 5.40621 5.42867 5.48999 5.60303 5.69717 5.94510 6.21017 6.42861 6.60437 6.63810 7.12407 7.35543 7.56118 8.11945 8.70139 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.001381 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.847315 B =20263.763287 C =20619.874163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.071 4.071 4 C -0.117 4.117 5 C -0.155 4.155 6 C -0.134 4.134 7 C 0.503 3.497 8 O -0.584 6.584 9 N -0.719 5.719 10 C 0.135 3.865 11 C -0.100 4.100 12 C -0.120 4.120 13 C 0.062 3.938 14 N -0.676 5.676 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.158 4.158 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.416 0.584 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.123 0.877 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.343 0.657 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.084 0.916 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.498 -5.633 -27.340 33.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.090 4.090 4 C -0.155 4.155 5 C -0.212 4.212 6 C -0.174 4.174 7 C 0.292 3.708 8 O -0.464 6.464 9 N -0.371 5.371 10 C 0.010 3.990 11 C -0.119 4.119 12 C -0.159 4.159 13 C -0.048 4.048 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.198 4.198 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.253 0.747 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.162 0.838 49 H 0.086 0.914 50 H 0.123 0.877 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.563 -7.101 -26.922 32.919 hybrid contribution 0.774 1.236 0.364 1.503 sum -16.789 -5.865 -26.558 31.962 Atomic orbital electron populations 1.21880 0.94983 1.01571 1.02427 1.21614 0.96621 0.96563 1.01556 1.20910 0.99542 0.94950 0.93580 1.21616 1.01440 0.99360 0.93038 1.21804 1.00561 1.01057 0.97764 1.21872 1.03143 1.01513 0.90848 1.21367 0.80873 0.83036 0.85558 1.90674 1.38386 1.30572 1.86800 1.45985 1.49025 1.36782 1.05332 1.21205 0.96875 0.96766 0.84105 1.22582 1.01051 0.96006 0.92215 1.23041 1.01376 0.96457 0.95050 1.23209 0.92654 0.97674 0.91285 1.60032 1.05443 1.42900 1.22329 1.21567 0.94968 0.94170 0.95854 1.21012 0.90711 0.82513 0.83576 1.90491 1.44648 1.45295 1.70886 1.41923 1.16647 1.28333 1.34023 1.19635 0.95149 1.14429 1.17496 0.90487 1.26013 1.02011 0.94874 0.98143 1.69662 1.33384 1.17581 1.35326 0.85006 0.77510 0.78062 0.77860 1.19756 1.19321 1.19831 1.23796 1.00212 0.98995 0.96757 0.92247 0.91203 0.93402 0.92520 0.93086 0.93007 0.90228 0.91198 0.93667 0.92778 0.91954 0.86321 0.86869 0.74722 0.93561 0.92411 0.85889 0.91101 0.90131 0.86916 0.83776 0.91442 0.87723 0.76904 0.91256 0.89754 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.21 71.98 0.66 -0.95 16 2 C -0.13 -1.92 5.19 30.60 0.16 -1.76 16 3 C -0.07 -0.92 1.81 -10.79 -0.02 -0.94 16 4 C -0.12 -1.01 5.15 30.59 0.16 -0.85 16 5 C -0.15 -1.50 9.52 71.98 0.69 -0.82 16 6 C -0.13 -1.33 4.99 29.85 0.15 -1.18 16 7 C 0.50 8.78 7.54 87.65 0.66 9.44 16 8 O -0.58 -15.89 13.97 -3.03 -0.04 -15.93 16 9 N -0.72 -9.43 5.56 -463.05 -2.57 -12.00 16 10 C 0.13 2.27 5.51 86.38 0.48 2.75 16 11 C -0.10 -1.33 3.76 -10.17 -0.04 -1.37 16 12 C -0.12 -2.25 7.44 31.12 0.23 -2.01 16 13 C 0.06 1.28 4.16 45.44 0.19 1.47 16 14 N -0.68 -20.96 6.24 -492.86 -3.07 -24.04 16 15 C 0.07 2.24 6.02 85.55 0.52 2.75 16 16 C 0.43 20.83 7.82 87.65 0.69 21.51 16 17 O -0.63 -35.40 15.78 -3.07 -0.05 -35.45 16 18 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 23 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 C -0.16 -2.61 7.27 31.21 0.23 -2.39 16 28 H 0.06 0.54 6.27 -2.38 -0.01 0.52 16 29 H 0.07 0.55 6.39 -2.39 -0.02 0.53 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.87 6.77 -2.39 -0.02 0.85 16 32 H 0.05 1.11 5.92 -2.39 -0.01 1.09 16 33 H 0.05 0.94 7.95 -2.39 -0.02 0.92 16 34 H 0.08 0.50 6.17 -2.39 -0.01 0.49 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.05 0.55 6.89 -2.39 -0.02 0.53 16 38 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.12 0.64 6.18 -2.39 -0.01 0.63 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.42 2.66 8.47 -92.71 -0.79 1.87 16 42 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.11 2.00 7.88 -2.38 -0.02 1.98 16 48 H 0.34 11.51 7.91 -89.70 -0.71 10.80 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 52 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 53 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.07 1.41 7.59 -2.38 -0.02 1.40 16 Total: -1.00 -74.58 424.59 -0.34 -74.92 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -1.31 Total: 40.57 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.02 Total: 7.03 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -6.99 Total: -116.24 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.09 Total: -51.38 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.58 -0.34 -74.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100794457.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.908 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds