Wall clock time and date at job start Sat Apr 11 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53005 * 109.47159 * 300.00546 * 3 2 1 5 5 C 1.53006 * 109.46997 * 60.00177 * 3 2 1 6 6 C 1.50703 * 109.47466 * 180.02562 * 3 2 1 7 7 O 1.21278 * 119.99818 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99991 * 180.02562 * 6 3 2 9 9 C 1.46496 * 120.00012 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.47161 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.28526 * 52.87802 * 10 9 8 12 12 C 1.54377 * 110.32876 * 290.63955 * 10 9 8 13 13 N 1.48562 * 104.59658 * 217.25078 * 12 10 9 14 14 C 1.46891 * 110.99983 * 159.04035 * 13 12 10 15 15 C 1.50699 * 109.47028 * 174.70823 * 14 13 12 16 16 O 1.21292 * 120.00436 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00145 * 180.02562 * 15 14 13 18 18 C 1.37099 * 120.00261 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99365 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99820 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00660 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99802 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47246 * 59.99577 * 22 20 18 24 24 H 1.48498 * 109.47382 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47091 * 299.99806 * 22 20 18 26 26 C 1.48561 * 104.21901 * 39.48101 * 13 12 10 27 27 C 1.54262 * 110.32333 * 174.99903 * 10 9 8 28 28 H 1.09001 * 110.32222 * 0.02562 * 27 10 9 29 29 C 1.53001 * 110.32772 * 237.79661 * 27 10 9 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.08992 * 109.47061 * 59.99386 * 4 3 2 36 36 H 1.09001 * 109.46812 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.46935 * 299.99411 * 4 3 2 38 38 H 1.08996 * 109.47261 * 59.99820 * 5 3 2 39 39 H 1.09001 * 109.47377 * 180.02562 * 5 3 2 40 40 H 1.09000 * 109.46866 * 300.00212 * 5 3 2 41 41 H 0.97004 * 120.00071 * 359.97438 * 8 6 3 42 42 H 1.08993 * 109.47156 * 300.00430 * 9 8 6 43 43 H 1.09002 * 109.47021 * 60.00038 * 9 8 6 44 44 H 1.08995 * 110.40818 * 336.02993 * 12 10 9 45 45 H 1.09000 * 110.40559 * 98.47062 * 12 10 9 46 46 H 1.08999 * 109.47444 * 294.70709 * 14 13 12 47 47 H 1.09005 * 109.47189 * 54.70595 * 14 13 12 48 48 H 0.97004 * 119.99736 * 359.97438 * 17 15 14 49 49 H 0.96996 * 120.00871 * 180.02562 * 21 20 18 50 50 H 1.09003 * 110.41081 * 201.73767 * 26 13 12 51 51 H 1.09003 * 110.50831 * 79.34801 * 26 13 12 52 52 H 1.09001 * 109.47026 * 59.99827 * 29 27 10 53 53 H 1.09000 * 109.47294 * 179.97438 * 29 27 10 54 54 H 1.09005 * 109.47119 * 300.00189 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3922 -0.0015 8 7 4.2209 2.6097 -0.0002 9 6 5.6859 2.6098 -0.0003 10 6 6.1958 4.0523 -0.0004 11 1 5.7401 4.6143 0.8148 12 6 5.8934 4.7279 -1.3551 13 7 7.0777 5.5853 -1.6185 14 6 7.1897 5.9036 -3.0481 15 6 8.3212 6.8764 -3.2590 16 8 8.9701 7.2666 -2.3115 17 7 8.6114 7.3137 -4.5004 18 6 9.6404 8.1991 -4.6922 19 1 10.2182 8.5465 -3.8485 20 6 9.9399 8.6495 -5.9721 21 7 9.2372 8.2264 -6.9988 22 14 11.3424 9.8554 -6.2335 23 1 12.6122 9.2478 -5.7606 24 1 11.4553 10.1776 -7.6787 25 1 11.0743 11.0999 -5.4689 26 6 8.2302 4.7656 -1.1636 27 6 7.7331 4.0771 0.1256 28 1 8.1243 3.0616 0.1871 29 6 8.1526 4.8852 1.3553 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.4400 2.1637 -1.2492 36 1 1.8929 3.1916 -1.2489 37 1 1.8933 1.6500 -2.1392 38 1 1.8933 1.6499 2.1393 39 1 1.8930 3.1915 1.2492 40 1 0.4400 2.1637 1.2493 41 1 3.7359 3.4498 0.0001 42 1 6.0492 2.0956 0.8894 43 1 6.0492 2.0963 -0.8905 44 1 5.7856 3.9776 -2.1384 45 1 4.9919 5.3363 -1.2836 46 1 7.3866 4.9902 -3.6094 47 1 6.2576 6.3496 -3.3952 48 1 8.0922 7.0020 -5.2582 49 1 9.4465 8.5405 -7.8924 50 1 9.0881 5.4024 -0.9479 51 1 8.4900 4.0211 -1.9162 52 1 7.7296 4.4300 2.2508 53 1 9.2399 4.8933 1.4311 54 1 7.7870 5.9077 1.2601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102299290.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:08 Heat of formation + Delta-G solvation = -115.789803 kcal Electronic energy + Delta-G solvation = -30199.724647 eV Core-core repulsion = 26169.460028 eV Total energy + Delta-G solvation = -4030.264619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.41435 -40.69920 -39.49813 -37.34918 -36.21539 -35.78699 -34.21467 -33.22234 -31.71810 -30.56099 -29.03636 -28.24238 -27.30031 -26.67210 -25.75145 -24.47911 -22.70373 -21.87754 -21.26443 -20.83499 -19.94573 -19.64598 -17.92517 -17.69472 -17.32395 -16.74848 -16.68679 -16.40207 -16.28339 -15.72596 -15.63988 -15.43192 -15.11194 -14.96798 -14.84041 -14.47968 -14.38905 -13.98927 -13.72896 -13.52906 -13.50387 -13.41994 -13.29595 -12.97114 -12.95768 -12.82001 -12.75663 -12.50077 -12.44086 -12.39091 -12.22677 -12.12103 -12.09578 -11.80109 -11.61442 -11.56721 -11.53027 -11.50189 -11.46658 -10.63921 -10.30745 -10.08931 -10.00674 -9.35958 -8.46317 -5.94968 1.39236 1.40816 1.51784 1.65605 2.06048 2.19034 2.28290 2.82209 3.20070 3.37092 3.54849 3.59983 3.70362 3.80875 3.84133 3.91773 4.16997 4.24245 4.28234 4.31359 4.38824 4.41448 4.46685 4.51859 4.57465 4.61505 4.64698 4.70200 4.71172 4.78579 4.79869 4.90798 4.94034 4.96347 5.00059 5.12114 5.14042 5.14657 5.15437 5.17158 5.26228 5.27906 5.40618 5.43298 5.44179 5.48815 5.56148 5.85128 5.94722 6.09703 6.56008 6.61022 7.13230 7.26081 7.56802 8.12906 8.70956 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002005 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.303902 B =13963.560533 C =14960.457514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.142 4.142 5 C -0.140 4.140 6 C 0.516 3.484 7 O -0.589 6.589 8 N -0.714 5.714 9 C 0.135 3.865 10 C -0.083 4.083 11 H 0.105 0.895 12 C 0.035 3.965 13 N -0.501 5.501 14 C 0.047 3.953 15 C 0.442 3.558 16 O -0.614 6.614 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.039 3.961 27 C -0.081 4.081 28 H 0.087 0.913 29 C -0.133 4.133 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.414 0.586 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.111 0.889 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.062 0.938 51 H 0.032 0.968 52 H 0.074 0.926 53 H 0.048 0.952 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.582 -13.364 14.226 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.081 4.081 4 C -0.200 4.200 5 C -0.198 4.198 6 C 0.304 3.696 7 O -0.469 6.469 8 N -0.366 5.366 9 C 0.011 3.989 10 C -0.103 4.103 11 H 0.123 0.877 12 C -0.092 4.092 13 N -0.225 5.225 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.499 6.499 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.090 4.090 27 C -0.101 4.101 28 H 0.105 0.895 29 C -0.190 4.190 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.050 0.950 52 H 0.093 0.907 53 H 0.067 0.933 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.723 -13.265 14.914 27.367 hybrid contribution 0.870 -0.028 -1.474 1.711 sum -17.853 -13.293 13.441 26.002 Atomic orbital electron populations 1.21894 0.93468 1.02331 1.03071 1.21329 0.97107 0.93831 1.01590 1.20847 0.89026 0.98603 0.99631 1.21954 1.03235 1.00225 0.94541 1.21942 1.03209 1.00206 0.94411 1.21203 0.91099 0.83042 0.74247 1.90678 1.71521 1.33126 1.51574 1.45939 1.06990 1.09084 1.74607 1.21344 0.79953 0.95909 1.01669 1.22112 0.95474 0.94384 0.98285 0.87702 1.23344 0.94334 0.95156 0.96398 1.65086 1.03273 1.39477 1.14652 1.21914 0.98099 0.97681 0.90803 1.20746 0.87745 0.85789 0.82812 1.90477 1.55224 1.62402 1.41834 1.41935 1.30978 1.40922 1.07522 1.19610 1.10563 1.21851 0.94119 0.90343 1.26034 1.01068 0.99952 0.94327 1.69664 1.41401 1.45336 0.99837 0.84998 0.77793 0.78094 0.77503 1.19797 1.19489 1.19672 1.23170 0.94897 0.94459 0.96427 1.21836 0.94388 0.99527 0.94351 0.89452 1.21735 1.00954 0.99798 0.96557 0.91117 0.92528 0.91380 0.92982 0.93318 0.89215 0.90773 0.93333 0.92941 0.90733 0.89256 0.74864 0.91397 0.92879 0.93338 0.88214 0.91862 0.87082 0.77119 0.91336 0.91986 0.95001 0.90743 0.93301 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.21 71.98 0.66 -0.72 16 2 C -0.10 -1.50 4.28 30.59 0.13 -1.36 16 3 C -0.08 -1.00 0.64 -52.92 -0.03 -1.03 16 4 C -0.14 -1.35 8.02 71.98 0.58 -0.77 16 5 C -0.14 -1.16 8.02 71.98 0.58 -0.58 16 6 C 0.52 10.04 6.48 87.66 0.57 10.60 16 7 O -0.59 -17.04 15.98 -3.02 -0.05 -17.09 16 8 N -0.71 -10.69 5.21 -463.08 -2.41 -13.10 16 9 C 0.14 2.41 4.79 86.38 0.41 2.82 16 10 C -0.08 -1.49 2.74 -9.90 -0.03 -1.51 16 11 H 0.10 1.60 7.71 -2.39 -0.02 1.58 16 12 C 0.04 0.74 5.84 86.45 0.50 1.24 16 13 N -0.50 -15.68 5.06 -886.06 -4.48 -20.17 16 14 C 0.05 1.62 5.30 85.56 0.45 2.08 16 15 C 0.44 21.22 7.58 87.66 0.66 21.88 16 16 O -0.61 -34.04 14.42 -3.07 -0.04 -34.08 16 17 N -0.58 -29.86 5.29 -306.99 -1.62 -31.49 16 18 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 21 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 22 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.04 1.21 5.34 86.45 0.46 1.68 16 27 C -0.08 -1.83 3.30 -9.90 -0.03 -1.86 16 28 H 0.09 1.77 7.71 -2.39 -0.02 1.75 16 29 C -0.13 -2.93 8.90 71.98 0.64 -2.29 16 30 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.51 6.43 -2.38 -0.02 0.49 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.09 0.56 6.43 -2.39 -0.02 0.54 16 36 H 0.07 0.52 7.57 -2.39 -0.02 0.50 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.42 7.57 -2.39 -0.02 0.40 16 40 H 0.09 0.46 6.43 -2.39 -0.02 0.44 16 41 H 0.41 3.94 7.25 -92.71 -0.67 3.27 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.13 7.98 -2.39 -0.02 1.12 16 44 H 0.05 1.00 7.60 -2.39 -0.02 0.99 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 2.03 7.88 -2.39 -0.02 2.01 16 47 H 0.11 3.35 8.13 -2.38 -0.02 3.33 16 48 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 49 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.06 2.45 6.63 -2.39 -0.02 2.43 16 51 H 0.03 1.01 7.83 -2.39 -0.02 0.99 16 52 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -74.07 419.77 0.02 -74.05 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.51 Total: 34.69 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.84 Total: 11.69 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -8.24 Total: -114.54 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.09 Total: -51.17 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.07 0.02 -74.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102299290.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.739 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds