Wall clock time and date at job start Sat Apr 11 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47386 * 2 1 4 4 C 1.53003 * 109.47282 * 183.18848 * 3 2 1 5 5 C 1.53004 * 109.46814 * 303.18595 * 3 2 1 6 6 C 1.52999 * 109.46987 * 299.99756 * 5 3 2 7 7 C 1.50703 * 109.47340 * 63.18377 * 3 2 1 8 8 O 1.21278 * 119.99961 * 233.88591 * 7 3 2 9 9 N 1.34773 * 119.99560 * 53.61066 * 7 3 2 10 10 C 1.46923 * 120.63577 * 4.80737 * 9 7 3 11 11 C 1.53621 * 108.54493 * 126.36737 * 10 9 7 12 12 C 1.53040 * 109.24138 * 54.86055 * 11 10 9 13 13 N 1.46899 * 109.45976 * 178.49162 * 12 11 10 14 14 C 1.46901 * 111.00112 * 275.06461 * 13 12 11 15 15 C 1.50695 * 109.47170 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00494 * 0.02562 * 15 14 13 17 17 N 1.34786 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00211 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99699 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00418 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99655 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00574 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46766 * 59.99774 * 22 20 18 24 24 H 1.48499 * 109.47715 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47066 * 300.00318 * 22 20 18 26 26 C 1.53040 * 109.53550 * 298.51077 * 12 11 10 27 27 C 1.46925 * 120.62778 * 185.08989 * 9 7 3 28 28 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47466 * 300.00343 * 1 2 3 30 30 H 1.08996 * 109.47250 * 60.00035 * 1 2 3 31 31 H 1.09004 * 109.47009 * 239.99402 * 2 1 3 32 32 H 1.09006 * 109.46763 * 120.00130 * 2 1 3 33 33 H 1.09003 * 109.46627 * 286.25252 * 4 3 2 34 34 H 1.08998 * 109.47141 * 46.25037 * 4 3 2 35 35 H 1.08993 * 109.46929 * 166.25431 * 4 3 2 36 36 H 1.08995 * 109.47140 * 60.00399 * 5 3 2 37 37 H 1.08999 * 109.46823 * 180.02562 * 5 3 2 38 38 H 1.08999 * 109.47130 * 60.00444 * 6 5 3 39 39 H 1.09007 * 109.46881 * 179.97438 * 6 5 3 40 40 H 1.08992 * 109.47265 * 300.00062 * 6 5 3 41 41 H 1.08998 * 109.59151 * 246.20455 * 10 9 7 42 42 H 1.09004 * 109.58105 * 6.62799 * 10 9 7 43 43 H 1.09000 * 109.63370 * 294.86486 * 11 10 9 44 44 H 1.09004 * 109.43255 * 174.73170 * 11 10 9 45 45 H 1.08994 * 109.45067 * 58.52619 * 12 11 10 46 46 H 1.00899 * 111.00307 * 151.11190 * 13 12 11 47 47 H 1.08995 * 109.46952 * 300.00524 * 14 13 12 48 48 H 1.09005 * 109.46609 * 59.99933 * 14 13 12 49 49 H 0.96998 * 119.99780 * 359.97438 * 17 15 14 50 50 H 0.96995 * 119.99895 * 180.02562 * 21 20 18 51 51 H 1.09005 * 109.49657 * 301.41151 * 26 12 11 52 52 H 1.09003 * 109.52338 * 181.33648 * 26 12 11 53 53 H 1.09003 * 109.59073 * 353.36784 * 27 9 7 54 54 H 1.08999 * 109.58853 * 113.65592 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5679 1.4431 -0.0802 5 6 1.4656 2.1864 -1.2073 6 6 1.9091 1.4886 -2.4946 7 6 1.6032 2.1298 1.2680 8 8 0.9959 3.1780 1.2113 9 7 1.8826 1.5767 2.4649 10 6 2.7021 0.3605 2.5546 11 6 3.8652 0.6254 3.5225 12 6 3.3060 1.1062 4.8635 13 7 4.4123 1.3265 5.8044 14 6 4.7867 0.0763 6.4788 15 6 5.9214 0.3412 7.4343 16 8 6.3736 1.4614 7.5433 17 7 6.4340 -0.6666 8.1679 18 6 7.4660 -0.4256 9.0376 19 1 7.8686 0.5720 9.1346 20 6 7.9940 -1.4644 9.7942 21 7 7.5038 -2.6780 9.6766 22 14 9.4006 -1.1361 10.9787 23 1 8.9727 -0.1369 11.9904 24 1 9.7787 -2.3998 11.6609 25 1 10.5684 -0.6103 10.2268 26 6 2.5420 2.4165 4.6590 27 6 1.3685 2.1751 3.7043 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9823 1.1374 0.8805 34 1 3.8915 0.7466 -0.8536 35 1 3.9184 2.4458 -0.3246 36 1 0.3771 2.1860 -1.1501 37 1 1.8293 3.2139 -1.2075 38 1 1.5457 0.4610 -2.4946 39 1 1.4995 2.0184 -3.3547 40 1 2.9975 1.4891 -2.5517 41 1 2.0936 -0.4635 2.9271 42 1 3.0947 0.1110 1.5688 43 1 4.5210 1.3902 3.1065 44 1 4.4290 -0.2954 3.6726 45 1 2.6310 0.3514 5.2668 46 1 4.1793 2.0433 6.4752 47 1 3.9297 -0.3094 7.0309 48 1 5.1003 -0.6573 5.7360 49 1 6.0722 -1.5624 8.0811 50 1 7.8722 -3.4032 10.2050 51 1 3.2103 3.1645 4.2323 52 1 2.1640 2.7711 5.6179 53 1 0.8810 3.1233 3.4776 54 1 0.6515 1.4971 4.1674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203780798.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:22 Heat of formation + Delta-G solvation = -94.876381 kcal Electronic energy + Delta-G solvation = -30813.514596 eV Core-core repulsion = 26784.156851 eV Total energy + Delta-G solvation = -4029.357745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02174 -40.22897 -39.06909 -37.79102 -36.36701 -35.75946 -33.30531 -32.84003 -32.03302 -31.91649 -30.40458 -28.41315 -26.66308 -25.83121 -24.91907 -24.32471 -23.92868 -22.19946 -21.14005 -20.71722 -19.89293 -19.55026 -17.95859 -17.46624 -17.24904 -16.80197 -16.58113 -16.40062 -16.18561 -16.03178 -15.76396 -15.41860 -15.28909 -14.96339 -14.81720 -14.46934 -14.09512 -13.93784 -13.88520 -13.71721 -13.54213 -13.50315 -13.27956 -13.08457 -12.93788 -12.91101 -12.76257 -12.57197 -12.43265 -12.39998 -12.18863 -12.12455 -12.08956 -11.84170 -11.78211 -11.50306 -11.44702 -11.40744 -11.04835 -10.48451 -10.33352 -10.01117 -9.68106 -9.32108 -8.46252 -5.94813 1.39954 1.42101 1.52716 1.62723 2.00143 2.06140 2.29436 2.89584 3.21062 3.39183 3.48452 3.67037 3.78019 3.81387 3.87293 4.04810 4.11893 4.23014 4.28019 4.32558 4.33712 4.45489 4.48974 4.49568 4.54328 4.58695 4.61374 4.64973 4.66841 4.73463 4.75584 4.82219 4.89295 4.91007 4.94439 5.02749 5.09718 5.15152 5.15999 5.25545 5.29079 5.30377 5.33564 5.41026 5.42742 5.52439 5.61778 5.92007 6.14244 6.39676 6.41577 6.61000 7.13258 7.16989 7.57082 8.12796 8.70767 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.001961 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.584625 B =14274.160480 C =14588.119904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.074 4.074 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.149 4.149 7 C 0.522 3.478 8 O -0.589 6.589 9 N -0.606 5.606 10 C 0.089 3.911 11 C -0.123 4.123 12 C 0.091 3.909 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.127 4.127 27 C 0.116 3.884 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.343 0.657 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.056 0.944 52 H 0.081 0.919 53 H 0.076 0.924 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -0.964 -22.092 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.077 4.077 4 C -0.213 4.213 5 C -0.137 4.137 6 C -0.206 4.206 7 C 0.312 3.688 8 O -0.470 6.470 9 N -0.338 5.338 10 C -0.032 4.032 11 C -0.162 4.162 12 C -0.019 4.019 13 N -0.313 5.313 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.166 4.166 27 C -0.007 4.007 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.145 0.855 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.162 0.838 47 H 0.085 0.915 48 H 0.125 0.875 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.100 0.900 53 H 0.094 0.906 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.532 0.076 -22.411 26.710 hybrid contribution -0.158 0.085 1.630 1.640 sum -14.689 0.161 -20.781 25.449 Atomic orbital electron populations 1.21834 0.95906 1.02295 1.01128 1.22133 0.96303 0.92839 1.05336 1.20866 0.97979 0.97373 0.91502 1.22221 0.91588 1.03296 1.04159 1.21368 1.00380 0.98329 0.93621 1.21857 1.02072 1.01131 0.95549 1.21174 0.77746 0.84053 0.85830 1.90643 1.43835 1.24881 1.87635 1.48153 1.51710 1.28346 1.05589 1.22693 0.91893 0.86215 1.02441 1.22041 0.97654 1.02344 0.94140 1.21573 0.90324 0.96854 0.93114 1.60119 1.41234 1.07840 1.22110 1.21573 0.95212 0.93785 0.95894 1.20951 0.87337 0.84895 0.84429 1.90496 1.65234 1.24571 1.70933 1.41923 1.31885 1.10465 1.36705 1.19608 1.11951 0.96360 1.18500 0.90487 1.26015 1.01154 0.94386 0.99675 1.69657 1.43398 1.00658 1.42232 0.85010 0.77805 0.77779 0.77878 1.19813 1.19417 1.19786 1.21995 0.97100 0.97335 1.00121 1.21528 0.95562 0.99676 0.83905 0.90963 0.94996 0.92395 0.88275 0.88969 0.90880 0.88565 0.93011 0.92399 0.93584 0.91014 0.92473 0.91620 0.89076 0.85527 0.92302 0.89706 0.92153 0.83766 0.91540 0.87514 0.76890 0.91273 0.92536 0.90015 0.90582 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.27 71.98 0.67 -1.19 16 2 C -0.13 -1.29 4.14 30.59 0.13 -1.16 16 3 C -0.07 -1.11 0.30 -52.93 -0.02 -1.13 16 4 C -0.16 -1.98 7.31 71.98 0.53 -1.45 16 5 C -0.10 -1.60 3.82 30.60 0.12 -1.48 16 6 C -0.15 -1.52 9.23 71.98 0.66 -0.86 16 7 C 0.52 11.48 5.37 87.66 0.47 11.95 16 8 O -0.59 -18.04 15.40 -3.02 -0.05 -18.08 16 9 N -0.61 -11.22 2.96 -818.07 -2.42 -13.63 16 10 C 0.09 1.19 3.85 86.51 0.33 1.53 16 11 C -0.12 -2.25 5.41 30.82 0.17 -2.09 16 12 C 0.09 1.93 2.45 44.94 0.11 2.04 16 13 N -0.68 -20.44 5.93 -495.45 -2.94 -23.38 16 14 C 0.07 2.18 5.96 85.56 0.51 2.69 16 15 C 0.44 20.38 7.82 87.65 0.69 21.06 16 16 O -0.63 -34.62 15.78 -3.06 -0.05 -34.67 16 17 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 18 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 21 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 22 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 C -0.13 -2.63 5.36 30.67 0.16 -2.46 16 27 C 0.12 2.24 6.44 86.36 0.56 2.80 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.03 0.52 7.32 -2.38 -0.02 0.50 16 30 H 0.06 0.73 6.37 -2.39 -0.02 0.71 16 31 H 0.10 0.62 6.58 -2.39 -0.02 0.60 16 32 H 0.09 0.75 4.38 -2.38 -0.01 0.74 16 33 H 0.07 0.94 4.82 -2.39 -0.01 0.93 16 34 H 0.10 0.76 7.13 -2.39 -0.02 0.74 16 35 H 0.05 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.06 1.06 6.37 -2.39 -0.02 1.05 16 37 H 0.05 0.93 8.03 -2.39 -0.02 0.92 16 38 H 0.07 0.55 6.50 -2.39 -0.02 0.53 16 39 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.06 0.58 6.76 -2.39 -0.02 0.57 16 41 H 0.09 0.91 8.00 -2.39 -0.02 0.89 16 42 H 0.13 1.29 2.82 -2.38 -0.01 1.28 16 43 H 0.06 1.31 7.92 -2.39 -0.02 1.29 16 44 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 45 H 0.06 1.12 7.80 -2.39 -0.02 1.11 16 46 H 0.34 11.13 8.03 -89.69 -0.72 10.41 16 47 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 48 H 0.11 3.02 7.41 -2.38 -0.02 3.00 16 49 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 50 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 51 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 53 H 0.08 1.76 7.00 -2.39 -0.02 1.74 16 54 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.90 402.00 1.07 -71.83 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -0.53 Total: 40.36 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.36 Total: 11.99 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.70 Total: -116.07 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.09 Total: -52.75 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.90 1.07 -71.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203780798.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.045 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds