Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99329 * 2 1 4 4 N 1.34773 * 120.00223 * 180.02562 * 2 1 3 5 5 C 1.46494 * 119.99854 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47467 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47016 * 299.99591 * 5 4 2 8 8 C 1.52996 * 109.47310 * 295.00093 * 7 5 4 9 9 C 1.52996 * 109.47436 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47339 * 175.00307 * 9 8 7 11 11 C 1.53006 * 109.46892 * 294.99944 * 9 8 7 12 12 C 1.50700 * 109.47426 * 59.99660 * 5 4 2 13 13 O 1.21279 * 120.00113 * 340.00211 * 12 5 4 14 14 N 1.34784 * 119.99961 * 159.99980 * 12 5 4 15 15 C 1.46927 * 120.62995 * 359.72079 * 14 12 5 16 16 C 1.53626 * 108.53906 * 126.36585 * 15 14 12 17 17 C 1.53041 * 109.24183 * 54.85853 * 16 15 14 18 18 N 1.46493 * 109.46261 * 178.48654 * 17 16 15 19 19 C 1.36948 * 119.99998 * 275.06879 * 18 17 16 20 20 H 1.07996 * 119.99762 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99902 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00137 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47331 * 120.00219 * 23 21 19 26 26 H 1.48504 * 109.47015 * 239.99948 * 23 21 19 27 27 C 1.53036 * 109.53807 * 298.50777 * 17 16 15 28 28 C 1.46923 * 120.62964 * 179.97438 * 14 12 5 29 29 H 1.09004 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47382 * 299.99539 * 1 2 3 31 31 H 1.08998 * 109.47708 * 60.00068 * 1 2 3 32 32 H 0.96998 * 119.99866 * 359.97438 * 4 2 1 33 33 H 1.08999 * 109.46842 * 55.00181 * 7 5 4 34 34 H 1.08999 * 109.46967 * 175.00156 * 7 5 4 35 35 H 1.09005 * 109.47136 * 300.00285 * 8 7 5 36 36 H 1.09002 * 109.46992 * 59.99600 * 8 7 5 37 37 H 1.08999 * 109.47029 * 55.00070 * 9 8 7 38 38 H 1.08999 * 109.47254 * 59.99901 * 10 9 8 39 39 H 1.09004 * 109.47199 * 179.97438 * 10 9 8 40 40 H 1.08995 * 109.46849 * 299.99533 * 10 9 8 41 41 H 1.09008 * 109.46873 * 59.99948 * 11 9 8 42 42 H 1.09003 * 109.46956 * 179.97438 * 11 9 8 43 43 H 1.08999 * 109.47386 * 299.99907 * 11 9 8 44 44 H 1.08998 * 109.58645 * 246.19910 * 15 14 12 45 45 H 1.09001 * 109.58579 * 6.63067 * 15 14 12 46 46 H 1.08990 * 109.63926 * 294.86483 * 16 15 14 47 47 H 1.09005 * 109.42826 * 174.72267 * 16 15 14 48 48 H 1.09010 * 109.45941 * 58.52811 * 17 16 15 49 49 H 0.97000 * 120.00421 * 95.06454 * 18 17 16 50 50 H 0.96996 * 120.00161 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.49825 * 301.41219 * 27 17 16 52 52 H 1.09001 * 109.52568 * 181.32976 * 27 17 16 53 53 H 1.09007 * 109.58781 * 353.37617 * 28 14 12 54 54 H 1.08998 * 109.58580 * 113.65434 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6458 -1.1670 0.0000 6 1 4.0093 -2.1947 -0.0010 7 6 4.1563 -0.4450 -1.2486 8 6 3.7520 -1.2344 -2.4953 9 6 4.2630 -0.5127 -3.7439 10 6 3.9683 -1.3632 -4.9811 11 6 3.5592 0.8395 -3.8752 12 6 4.1477 -0.4574 1.2311 13 8 3.4191 0.3037 1.8318 14 7 5.4064 -0.6685 1.6646 15 6 6.2988 -1.5921 0.9512 16 6 7.6015 -0.8505 0.6146 17 6 8.1966 -0.2682 1.8987 18 7 9.4578 0.4093 1.5887 19 6 10.6232 -0.3074 1.5278 20 1 10.6122 -1.3722 1.7079 21 6 11.8183 0.3345 1.2335 22 7 11.8315 1.6322 1.0134 23 14 13.4077 -0.6432 1.1498 24 1 13.1250 -2.0729 1.4347 25 1 13.9966 -0.5155 -0.2075 26 1 14.3653 -0.1184 2.1562 27 6 7.2152 0.7354 2.5084 28 6 5.9101 0.0165 2.8628 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6959 -2.0072 -0.0005 33 1 3.7216 0.5536 -1.2940 34 1 5.2426 -0.3668 -1.2045 35 1 4.1867 -2.2330 -2.4498 36 1 2.6657 -1.3127 -2.5394 37 1 5.3383 -0.3560 -3.6584 38 1 2.8930 -1.5200 -5.0665 39 1 4.3319 -0.8488 -5.8707 40 1 4.4696 -2.3265 -4.8875 41 1 3.7692 1.4455 -2.9937 42 1 3.9236 1.3539 -4.7645 43 1 2.4839 0.6828 -3.9606 44 1 6.5177 -2.4515 1.5849 45 1 5.8190 -1.9265 0.0313 46 1 7.3927 -0.0439 -0.0880 47 1 8.3108 -1.5477 0.1685 48 1 8.3822 -1.0728 2.6104 49 1 9.4676 1.3656 1.4264 50 1 12.6666 2.0808 0.8082 51 1 7.0100 1.5272 1.7879 52 1 7.6491 1.1675 3.4101 53 1 5.1737 0.7438 3.2048 54 1 6.0954 -0.7138 3.6505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204156571.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -100.740188 kcal Electronic energy + Delta-G solvation = -31664.490681 eV Core-core repulsion = 27634.878662 eV Total energy + Delta-G solvation = -4029.612019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80871 -40.16259 -38.50848 -37.91344 -36.11447 -35.69412 -33.87133 -32.84780 -31.85432 -30.96579 -30.15294 -28.03461 -27.75671 -26.31536 -24.43667 -24.17515 -23.31312 -22.13483 -21.26229 -20.72566 -19.86879 -19.02078 -18.73458 -17.67967 -17.29024 -16.71165 -16.46221 -16.30487 -15.95527 -15.73684 -15.46055 -15.36636 -15.16988 -14.91168 -14.81203 -14.67981 -14.34863 -14.09366 -13.94626 -13.64943 -13.34659 -13.21253 -13.12678 -13.07602 -12.87725 -12.85806 -12.72305 -12.64782 -12.56053 -12.21148 -12.15012 -12.09395 -12.00636 -11.69506 -11.63834 -11.51526 -11.41492 -11.30929 -11.06880 -10.87808 -10.49831 -9.87686 -9.60988 -9.00502 -7.92320 -5.21539 1.48593 1.49318 1.59218 1.61453 1.75202 2.10110 2.46466 2.57583 3.40780 3.44784 3.75821 3.82445 3.86625 3.91674 4.03533 4.04929 4.08507 4.17200 4.20597 4.32227 4.33865 4.39912 4.47017 4.55013 4.60631 4.66181 4.70567 4.74724 4.79709 4.81953 4.85033 4.86836 4.91869 5.01459 5.03038 5.04612 5.06499 5.10969 5.16257 5.26389 5.29999 5.39513 5.47062 5.50798 5.54088 5.55172 5.57697 5.65727 6.28879 6.46129 6.72431 7.21805 7.34518 7.54299 8.10111 8.33354 9.31798 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.003023 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.083830 B = 9258.598279 C =10734.259808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.572 6.572 4 N -0.706 5.706 5 C 0.139 3.861 6 H 0.148 0.852 7 C -0.133 4.133 8 C -0.096 4.096 9 C -0.100 4.100 10 C -0.141 4.141 11 C -0.146 4.146 12 C 0.495 3.505 13 O -0.563 6.563 14 N -0.609 5.609 15 C 0.112 3.888 16 C -0.140 4.140 17 C 0.175 3.825 18 N -0.740 5.740 19 C -0.231 4.231 20 H 0.083 0.917 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.298 1.298 27 C -0.128 4.128 28 C 0.126 3.874 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.423 0.577 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.368 0.632 50 H 0.248 0.752 51 H 0.039 0.961 52 H 0.068 0.932 53 H 0.071 0.929 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.901 -14.439 -7.208 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.450 6.450 4 N -0.362 5.362 5 C 0.030 3.970 6 H 0.165 0.835 7 C -0.171 4.171 8 C -0.134 4.134 9 C -0.119 4.119 10 C -0.198 4.198 11 C -0.203 4.203 12 C 0.283 3.717 13 O -0.441 6.441 14 N -0.342 5.342 15 C -0.010 4.010 16 C -0.180 4.180 17 C 0.067 3.933 18 N -0.379 5.379 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.801 3.199 24 H -0.184 1.184 25 H -0.224 1.224 26 H -0.226 1.226 27 C -0.167 4.167 28 C 0.002 3.998 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.261 0.739 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.199 0.801 50 H 0.057 0.943 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.771 -13.460 -6.863 29.015 hybrid contribution 1.348 0.667 0.067 1.505 sum -23.424 -12.793 -6.796 27.541 Atomic orbital electron populations 1.21826 0.88965 1.06212 1.05080 1.21421 0.91881 0.83313 0.74192 1.90725 1.71553 1.33376 1.49297 1.45660 1.04888 1.09544 1.76059 1.20958 0.82569 1.02024 0.91426 0.83505 1.21975 1.00858 1.00865 0.93444 1.21534 1.01600 0.98889 0.91347 1.21127 0.99659 0.95213 0.95903 1.21781 1.02018 0.99645 0.96353 1.21850 1.00635 0.97227 1.00621 1.21601 0.81440 0.82185 0.86515 1.90696 1.56835 1.37636 1.58888 1.48249 1.12463 1.45071 1.28463 1.22090 0.89305 0.91563 0.98058 1.22514 0.96551 0.99845 0.99129 1.20406 0.84623 0.93786 0.94520 1.42710 1.03116 1.07614 1.84431 1.19694 0.86215 0.92669 1.37692 0.89931 1.25588 1.01227 0.96690 1.03794 1.69848 1.26247 1.09448 1.57022 0.85086 0.79792 0.78554 0.76435 1.18397 1.22404 1.22578 1.22043 0.95493 0.98370 1.00768 1.21405 0.94184 0.96791 0.87394 0.87224 0.89575 0.88337 0.73873 0.92015 0.91601 0.89525 0.91038 0.92360 0.92020 0.93041 0.91710 0.94820 0.92842 0.92405 0.88804 0.87295 0.94176 0.91103 0.92811 0.80114 0.94274 0.94173 0.91287 0.91035 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 10.39 71.24 0.74 -1.29 16 2 C 0.50 11.28 6.69 87.66 0.59 11.86 16 3 O -0.57 -19.93 12.96 19.41 0.25 -19.67 16 4 N -0.71 -11.04 4.65 -446.10 -2.07 -13.12 16 5 C 0.14 2.62 2.15 44.25 0.10 2.72 16 6 H 0.15 1.53 6.78 -2.39 -0.02 1.51 16 7 C -0.13 -2.84 3.97 30.59 0.12 -2.72 16 8 C -0.10 -1.40 4.57 30.59 0.14 -1.26 16 9 C -0.10 -1.72 2.92 -10.79 -0.03 -1.75 16 10 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 11 C -0.15 -2.94 8.95 71.98 0.64 -2.29 16 12 C 0.49 14.15 6.69 87.66 0.59 14.74 16 13 O -0.56 -21.24 13.10 19.43 0.25 -20.98 16 14 N -0.61 -16.31 2.97 -818.13 -2.43 -18.74 16 15 C 0.11 2.44 5.79 86.51 0.50 2.95 16 16 C -0.14 -4.42 5.67 30.82 0.17 -4.24 16 17 C 0.17 6.61 2.73 45.02 0.12 6.74 16 18 N -0.74 -37.00 5.12 -322.81 -1.65 -38.65 16 19 C -0.23 -12.47 9.93 84.03 0.83 -11.63 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 23 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 C -0.13 -4.48 5.55 30.66 0.17 -4.31 16 28 C 0.13 3.72 6.43 86.35 0.55 4.27 16 29 H 0.11 0.50 7.91 -2.38 -0.02 0.48 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 2.75 8.67 -92.71 -0.80 1.95 16 33 H 0.06 1.83 4.47 -2.39 -0.01 1.82 16 34 H 0.07 1.56 6.99 -2.39 -0.02 1.54 16 35 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.93 7.75 -2.39 -0.02 0.91 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.03 0.85 6.57 -2.38 -0.02 0.83 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.11 1.70 4.85 -2.39 -0.01 1.69 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 48 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 49 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 50 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 51 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 53 H 0.07 2.36 7.01 -2.38 -0.02 2.35 16 54 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -81.80 414.98 2.39 -79.41 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.63 Total: 35.76 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.37 Total: 8.43 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -5.87 Total: -130.59 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: 0.51 Total: -40.66 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -81.80 2.39 -79.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204156571.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.335 kcal (2) G-P(sol) polarization free energy of solvation -81.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds