Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46703 * 2 1 4 4 C 1.53005 * 109.47027 * 65.00353 * 3 2 1 5 5 C 1.53001 * 109.46968 * 185.58014 * 4 3 2 6 6 C 1.50702 * 109.46956 * 184.99697 * 3 2 1 7 7 O 1.21279 * 120.00290 * 263.30173 * 6 3 2 8 8 N 1.34780 * 119.99344 * 83.30227 * 6 3 2 9 9 C 1.46924 * 120.63188 * 4.90728 * 8 6 3 10 10 C 1.53621 * 108.54250 * 126.37012 * 9 8 6 11 11 C 1.53046 * 109.24495 * 54.85207 * 10 9 8 12 12 C 1.53002 * 109.45882 * 178.49153 * 11 10 9 13 13 N 1.46901 * 109.47026 * 295.06707 * 12 11 10 14 14 C 1.46905 * 110.99599 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46756 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00442 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99933 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00016 * 179.97438 * 17 15 14 19 19 H 1.07993 * 120.00245 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99831 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99845 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47102 * 90.00071 * 22 20 18 24 24 H 1.48500 * 109.47205 * 210.00032 * 22 20 18 25 25 H 1.48497 * 109.46978 * 330.00078 * 22 20 18 26 26 C 1.53042 * 109.53838 * 298.51270 * 11 10 9 27 27 C 1.46934 * 120.62722 * 185.18621 * 8 6 3 28 28 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47059 * 299.99436 * 1 2 3 30 30 H 1.08993 * 109.47103 * 59.99920 * 1 2 3 31 31 H 1.08994 * 109.47155 * 240.00485 * 2 1 3 32 32 H 1.08993 * 109.47103 * 120.00080 * 2 1 3 33 33 H 1.08995 * 109.47179 * 305.00083 * 3 2 1 34 34 H 1.08999 * 109.46997 * 305.57830 * 4 3 2 35 35 H 1.09001 * 109.46846 * 65.57635 * 4 3 2 36 36 H 1.08998 * 109.46736 * 174.87513 * 5 4 3 37 37 H 1.09000 * 109.47144 * 294.86728 * 5 4 3 38 38 H 1.08994 * 109.47067 * 54.87261 * 5 4 3 39 39 H 1.09007 * 109.58247 * 246.19594 * 9 8 6 40 40 H 1.08999 * 109.59022 * 6.62509 * 9 8 6 41 41 H 1.09001 * 109.63537 * 294.86351 * 10 9 8 42 42 H 1.09001 * 109.43495 * 174.72206 * 10 9 8 43 43 H 1.09005 * 109.44487 * 58.52715 * 11 10 9 44 44 H 1.09001 * 109.47259 * 55.06848 * 12 11 10 45 45 H 1.08998 * 109.46953 * 175.07056 * 12 11 10 46 46 H 1.00905 * 111.00088 * 56.05198 * 13 12 11 47 47 H 1.09003 * 109.47063 * 300.00003 * 14 13 12 48 48 H 1.08996 * 109.47074 * 60.00190 * 14 13 12 49 49 H 0.97001 * 120.00074 * 359.97438 * 17 15 14 50 50 H 0.96998 * 119.99850 * 180.02562 * 21 20 18 51 51 H 1.09001 * 109.49495 * 301.41020 * 26 11 10 52 52 H 1.08994 * 109.52210 * 181.33151 * 26 11 10 53 53 H 1.09001 * 109.58571 * 353.37190 * 27 8 6 54 54 H 1.08993 * 109.58453 * 113.65546 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0222 3.6057 1.2502 6 6 3.5419 1.4444 -0.1238 7 8 4.2321 1.5374 0.8691 8 7 4.1180 1.3428 -1.3380 9 6 3.2984 1.3375 -2.5574 10 6 3.8211 2.4304 -3.5020 11 6 5.3156 2.2116 -3.7486 12 6 5.8332 3.2754 -4.7188 13 7 5.1916 3.0976 -6.0283 14 6 5.6661 4.1036 -6.9879 15 6 4.9869 3.8903 -8.3162 16 8 4.1868 2.9887 -8.4505 17 7 5.2694 4.7008 -9.3553 18 6 4.6520 4.5065 -10.5639 19 1 3.9396 3.7037 -10.6834 20 6 4.9429 5.3425 -11.6350 21 7 4.3514 5.1559 -12.7936 22 14 6.1746 6.7316 -11.4281 23 1 7.5355 6.2404 -11.7630 24 1 5.8153 7.8510 -12.3352 25 1 6.1523 7.2075 -10.0216 26 6 6.0739 2.3177 -2.4236 27 6 5.5772 1.2291 -1.4670 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6053 1.9816 -0.8418 34 1 0.5576 2.0380 1.4453 35 1 2.1487 1.6485 2.1416 36 1 1.6533 4.1125 2.1419 37 1 3.1074 3.6958 1.2040 38 1 1.5815 4.0625 0.3641 39 1 3.3727 0.3646 -3.0433 40 1 2.2590 1.5414 -2.3000 41 1 3.6667 3.4100 -3.0498 42 1 3.2845 2.3779 -4.4494 43 1 5.4714 1.2218 -4.1780 44 1 5.5982 4.2664 -4.3306 45 1 6.9131 3.1741 -4.8267 46 1 4.1863 3.1229 -5.9448 47 1 5.4302 5.1006 -6.6156 48 1 6.7447 4.0077 -7.1114 49 1 5.9096 5.4217 -9.2481 50 1 4.5548 5.7392 -13.5414 51 1 5.8982 3.2985 -1.9815 52 1 7.1408 2.1854 -2.6028 53 1 6.0418 1.3616 -0.4899 54 1 5.8335 0.2467 -1.8633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204535025.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -114.806539 kcal Electronic energy + Delta-G solvation = -29968.976761 eV Core-core repulsion = 25938.754779 eV Total energy + Delta-G solvation = -4030.221982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.54029 -40.31962 -39.15530 -36.90789 -36.68598 -35.89930 -33.91305 -33.66215 -32.58097 -32.09286 -29.57256 -28.34580 -27.07323 -25.39295 -24.42465 -23.86376 -23.44740 -22.19638 -21.31769 -20.97554 -20.25022 -19.69956 -18.50325 -17.80774 -17.18867 -16.91188 -16.65274 -16.33387 -15.86070 -15.68439 -15.40695 -15.36120 -15.29130 -15.08951 -14.89188 -14.64879 -14.47212 -14.35026 -14.24578 -13.91181 -13.74147 -13.30107 -13.23805 -13.17163 -12.99648 -12.92277 -12.77762 -12.68407 -12.44374 -12.40818 -12.20052 -11.98565 -11.84937 -11.79582 -11.70006 -11.50988 -11.43968 -11.39704 -11.31605 -10.59557 -10.42498 -10.24262 -9.65210 -9.30034 -8.40877 -6.01626 1.30474 1.36033 1.44715 1.61019 1.96088 2.01217 2.23265 2.73931 3.15445 3.42526 3.45798 3.72143 3.73945 3.84854 3.92459 3.97245 4.12643 4.16510 4.18335 4.32903 4.34599 4.42768 4.43771 4.50296 4.53044 4.54873 4.55997 4.65257 4.67287 4.74997 4.77519 4.83525 4.88744 4.95392 4.98498 5.04006 5.05528 5.07729 5.16175 5.20449 5.21530 5.28886 5.37292 5.46256 5.46706 5.53704 5.58819 5.91768 6.07182 6.40379 6.43592 6.60257 6.88579 7.17644 7.40378 7.96653 8.76633 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.001864 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.052440 B =15019.739116 C =15502.944053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.609 5.609 9 C 0.106 3.894 10 C -0.131 4.131 11 C -0.079 4.079 12 C 0.068 3.932 13 N -0.685 5.685 14 C 0.061 3.939 15 C 0.448 3.552 16 O -0.613 6.613 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.056 0.944 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.231 1.231 26 C -0.116 4.116 27 C 0.109 3.891 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.344 0.656 47 H 0.074 0.926 48 H 0.113 0.887 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.060 0.940 52 H 0.089 0.911 53 H 0.076 0.924 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -3.500 29.193 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.128 4.128 4 C -0.144 4.144 5 C -0.210 4.210 6 C 0.306 3.694 7 O -0.464 6.464 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.098 4.098 12 C -0.061 4.061 13 N -0.319 5.319 14 C -0.072 4.072 15 C 0.236 3.764 16 O -0.497 6.497 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.074 0.926 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.155 1.155 26 C -0.155 4.155 27 C -0.013 4.013 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.092 0.908 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.108 0.892 53 H 0.094 0.906 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.505 -4.480 29.194 29.540 hybrid contribution 0.168 1.430 -0.433 1.504 sum -0.338 -3.050 28.761 28.924 Atomic orbital electron populations 1.21817 0.93448 1.02623 1.02830 1.21429 0.97707 0.93145 1.02473 1.21567 0.90152 0.99640 1.01412 1.21458 1.02093 0.95266 0.95630 1.21784 1.00536 0.96347 1.02356 1.21157 0.91631 0.74381 0.82223 1.90643 1.66059 1.51736 1.37917 1.48269 1.07666 1.71951 1.06280 1.22041 0.95585 0.99864 0.84120 1.22051 0.96194 0.99029 0.99674 1.21076 0.94741 0.99811 0.94184 1.22055 0.99656 0.97342 0.87044 1.60119 1.12434 1.50517 1.08809 1.21631 1.01067 0.95429 0.89028 1.21002 0.85210 0.83270 0.86888 1.90537 1.39255 1.35081 1.84852 1.42049 1.40768 1.30532 1.10001 1.19009 1.23136 1.15788 0.87771 0.92565 1.26124 1.00130 1.01256 0.93984 1.69806 1.44233 1.40618 1.02810 0.85365 0.78316 0.77428 0.80414 1.18216 1.20079 1.15467 1.21819 1.00776 0.98707 0.94164 1.21609 0.79861 0.99430 1.00425 0.91881 0.91759 0.91647 0.91217 0.92407 0.87235 0.88950 0.92671 0.91830 0.94768 0.92008 0.90191 0.87850 0.91650 0.90470 0.90472 0.94529 0.90085 0.83575 0.90836 0.86918 0.77507 0.91168 0.92124 0.89245 0.90577 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 71.98 0.70 -0.54 16 2 C -0.11 -1.27 5.38 30.60 0.16 -1.10 16 3 C -0.11 -1.47 1.40 -11.54 -0.02 -1.48 16 4 C -0.11 -1.52 4.96 30.60 0.15 -1.37 16 5 C -0.15 -2.34 9.63 71.98 0.69 -1.65 16 6 C 0.52 10.25 6.17 87.66 0.54 10.79 16 7 O -0.58 -16.09 14.60 -3.03 -0.04 -16.13 16 8 N -0.61 -10.21 2.97 -818.05 -2.43 -12.64 16 9 C 0.11 1.40 6.17 86.51 0.53 1.93 16 10 C -0.13 -2.00 5.18 30.82 0.16 -1.84 16 11 C -0.08 -1.29 2.36 -10.76 -0.03 -1.31 16 12 C 0.07 1.27 5.14 86.30 0.44 1.71 16 13 N -0.69 -18.59 6.12 -517.91 -3.17 -21.77 16 14 C 0.06 1.78 6.17 85.56 0.53 2.30 16 15 C 0.45 19.77 7.82 87.66 0.69 20.45 16 16 O -0.61 -33.21 15.78 -3.07 -0.05 -33.26 16 17 N -0.59 -27.47 5.09 -306.99 -1.56 -29.03 16 18 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 19 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 20 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 21 N -0.93 -55.95 13.96 21.67 0.30 -55.65 16 22 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 26 C -0.12 -1.68 5.36 30.67 0.16 -1.51 16 27 C 0.11 1.80 6.44 86.36 0.56 2.36 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 6.45 -2.38 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.78 7.97 -2.39 -0.02 0.76 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 1.16 6.13 -2.39 -0.01 1.14 16 34 H 0.09 0.92 6.32 -2.39 -0.02 0.91 16 35 H 0.05 1.00 7.67 -2.39 -0.02 0.98 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.03 0.69 6.99 -2.39 -0.02 0.67 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 1.03 5.41 -2.39 -0.01 1.01 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.33 6.62 -2.39 -0.02 1.31 16 43 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.34 9.87 6.65 -89.69 -0.60 9.27 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 50 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.08 1.51 7.00 -2.39 -0.02 1.49 16 54 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -78.56 415.28 1.25 -77.31 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.30 Total: 40.80 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.60 Total: 10.13 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -6.86 Total: -119.08 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.09 Total: -49.40 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -78.56 1.25 -77.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204535025.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.499 kcal (2) G-P(sol) polarization free energy of solvation -78.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds