Wall clock time and date at job start Sat Apr 11 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47287 * 2 1 4 4 C 1.53005 * 109.46583 * 119.99906 * 2 1 3 5 5 C 1.52997 * 109.47452 * 64.99949 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99622 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99622 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.62638 * 359.71455 * 12 10 9 14 14 C 1.53627 * 108.54183 * 126.37295 * 13 12 10 15 15 C 1.53040 * 109.24108 * 54.85576 * 14 13 12 16 16 C 1.53000 * 109.46054 * 178.49243 * 15 14 13 17 17 N 1.46497 * 109.47244 * 295.06833 * 16 15 14 18 18 C 1.36935 * 120.00255 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99940 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00074 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47181 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47368 * 120.00161 * 22 20 18 25 25 H 1.48503 * 109.47238 * 240.00128 * 22 20 18 26 26 C 1.53042 * 109.53871 * 298.50936 * 15 14 13 27 27 C 1.46920 * 120.63268 * 180.02562 * 12 10 9 28 28 H 1.09003 * 109.47469 * 300.00806 * 1 2 3 29 29 H 1.09004 * 109.46818 * 60.00201 * 1 2 3 30 30 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47111 * 239.99152 * 2 1 3 32 32 H 1.09000 * 109.47484 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47028 * 299.99670 * 3 2 1 34 34 H 1.09002 * 109.47076 * 59.99517 * 3 2 1 35 35 H 1.09001 * 109.46812 * 304.99732 * 4 2 1 36 36 H 1.09002 * 109.46935 * 185.00074 * 4 2 1 37 37 H 1.09001 * 109.46832 * 59.99801 * 5 4 2 38 38 H 1.09002 * 109.47153 * 299.99992 * 5 4 2 39 39 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 41 41 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 42 42 H 1.09005 * 109.58858 * 246.20434 * 13 12 10 43 43 H 1.08995 * 109.58867 * 6.63230 * 13 12 10 44 44 H 1.08999 * 109.63425 * 294.86802 * 14 13 12 45 45 H 1.09002 * 109.43315 * 174.72619 * 14 13 12 46 46 H 1.08998 * 109.45156 * 58.52626 * 15 14 13 47 47 H 1.09006 * 109.46937 * 55.06837 * 16 15 14 48 48 H 1.09004 * 109.47278 * 175.06625 * 16 15 14 49 49 H 0.97001 * 119.99721 * 359.97438 * 17 16 15 50 50 H 0.96999 * 119.99954 * 179.97438 * 21 20 18 51 51 H 1.09000 * 109.50220 * 301.42045 * 26 15 14 52 52 H 1.08999 * 109.52344 * 181.33009 * 26 15 14 53 53 H 1.09001 * 109.58920 * 353.36599 * 27 12 10 54 54 H 1.09001 * 109.58884 * 113.65283 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 6 2.1379 -2.9060 2.4184 7 8 2.7592 -2.2936 3.2609 8 7 1.8979 -4.2220 2.5817 9 6 2.3872 -4.9129 3.7775 10 6 1.9883 -6.3649 3.7172 11 8 1.3571 -6.7815 2.7691 12 7 2.3321 -7.2003 4.7174 13 6 3.1011 -6.7114 5.8700 14 6 2.3460 -7.0846 7.1548 15 6 2.0862 -8.5928 7.1670 16 6 1.3674 -8.9757 8.4623 17 7 2.2505 -8.7237 9.6037 18 6 1.8195 -8.9924 10.8753 19 1 0.8286 -9.3904 11.0368 20 6 2.6565 -8.7542 11.9568 21 7 3.8646 -8.2705 11.7599 22 14 2.0687 -9.1213 13.6914 23 1 0.6839 -9.6555 13.6422 24 1 2.9650 -10.1276 14.3153 25 1 2.0900 -7.8732 14.4959 26 6 1.2131 -8.9715 5.9685 27 6 1.9511 -8.6185 4.6726 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8898 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6052 -0.2617 2.1370 36 1 3.1262 -0.6444 1.2953 37 1 2.0698 -2.6550 0.3004 38 1 0.5488 -2.2724 1.1422 39 1 1.4013 -4.7119 1.9078 40 1 3.4735 -4.8357 3.8227 41 1 1.9530 -4.4537 4.6656 42 1 4.0874 -7.1755 5.8747 43 1 3.2049 -5.6282 5.8071 44 1 1.3959 -6.5515 7.1892 45 1 2.9482 -6.8122 8.0215 46 1 3.0354 -9.1251 7.1075 47 1 0.4613 -8.3785 8.5652 48 1 1.1043 -10.0331 8.4329 49 1 3.1407 -8.3666 9.4586 50 1 4.4494 -8.1037 12.5156 51 1 0.2737 -8.4205 6.0140 52 1 1.0086 -10.0419 5.9905 53 1 1.2958 -8.7941 3.8195 54 1 2.8455 -9.2345 4.5793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206614704.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:03 Heat of formation + Delta-G solvation = -112.937326 kcal Electronic energy + Delta-G solvation = -29245.363300 eV Core-core repulsion = 25215.222373 eV Total energy + Delta-G solvation = -4030.140927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.59639 -40.60305 -38.99995 -37.48071 -36.60154 -35.56759 -34.54001 -32.67177 -32.04668 -31.87178 -29.34557 -27.97356 -27.86799 -25.63448 -24.94167 -24.32807 -23.17516 -21.59515 -21.48694 -20.76742 -20.16625 -19.17538 -18.59169 -17.76430 -17.26762 -17.07490 -16.72033 -16.50921 -16.28481 -15.72409 -15.59019 -15.41956 -15.32730 -15.16055 -14.91401 -14.61764 -14.43372 -14.28061 -13.96442 -13.84446 -13.75945 -13.51972 -13.32567 -13.11757 -13.04172 -12.92610 -12.78369 -12.61650 -12.22354 -12.20728 -12.12299 -11.96210 -11.68440 -11.68017 -11.55702 -11.49644 -11.42440 -11.32595 -11.02981 -10.96206 -10.90939 -10.26881 -9.74557 -8.97576 -7.95155 -5.22706 1.37828 1.47551 1.47724 1.57697 1.60773 1.66392 2.30245 2.56072 3.26567 3.38724 3.71818 3.75978 3.79550 3.88219 3.89622 4.00399 4.09357 4.18683 4.21977 4.28796 4.31451 4.35998 4.40114 4.41373 4.57198 4.58571 4.68809 4.71902 4.79633 4.83236 4.84808 4.88298 4.95077 4.97979 5.01632 5.08410 5.08952 5.16413 5.16913 5.19445 5.22972 5.29266 5.36282 5.47330 5.51122 5.53137 5.54644 5.56587 6.23715 6.28085 6.45966 6.91343 7.17786 7.34918 8.11502 8.35277 9.28274 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.001724 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.222012 B =16239.077040 C =17372.133319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.582 6.582 8 N -0.716 5.716 9 C 0.100 3.900 10 C 0.515 3.485 11 O -0.570 6.570 12 N -0.600 5.600 13 C 0.109 3.891 14 C -0.121 4.121 15 C -0.084 4.084 16 C 0.156 3.844 17 N -0.742 5.742 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.115 4.115 27 C 0.115 3.885 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.417 0.583 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.013 0.987 48 H 0.019 0.981 49 H 0.376 0.624 50 H 0.251 0.749 51 H 0.061 0.939 52 H 0.088 0.912 53 H 0.090 0.910 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 11.590 -28.092 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.135 4.135 5 C -0.173 4.173 6 C 0.299 3.701 7 O -0.462 6.462 8 N -0.371 5.371 9 C -0.027 4.027 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.333 5.333 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.103 4.103 16 C 0.029 3.971 17 N -0.385 5.385 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.799 3.201 23 H -0.193 1.193 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.154 4.154 27 C -0.006 4.006 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.256 0.744 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.031 0.969 48 H 0.037 0.963 49 H 0.209 0.791 50 H 0.060 0.940 51 H 0.080 0.920 52 H 0.107 0.893 53 H 0.109 0.891 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.667 11.712 -27.862 30.581 hybrid contribution 0.028 -0.385 1.381 1.434 sum -4.639 11.326 -26.481 29.173 Atomic orbital electron populations 1.21935 0.94749 1.02384 1.01847 1.21122 0.96277 0.96205 0.97612 1.21849 1.00963 0.95997 1.01888 1.21372 1.00883 0.93011 0.98255 1.21791 1.04220 0.96135 0.95170 1.21413 0.78583 0.81194 0.88867 1.90712 1.42449 1.66776 1.46242 1.45813 1.58096 1.09750 1.23474 1.21114 1.02009 0.88868 0.90737 1.20607 0.78784 0.88324 0.81967 1.90652 1.42005 1.78048 1.34292 1.48142 1.54303 1.10145 1.20665 1.22040 0.94815 1.01087 0.83419 1.21895 1.00810 0.95887 0.97298 1.21201 0.99289 0.96159 0.93689 1.20832 0.92741 0.96881 0.86609 1.42553 1.16177 1.77950 1.01813 1.19650 0.98647 1.34299 0.85125 0.91024 1.25498 0.96627 1.02813 1.01593 1.69798 1.08761 1.52548 1.30606 0.85125 0.77680 0.76884 0.80376 1.19287 1.22008 1.22093 1.21826 0.98235 1.02565 0.92775 1.21684 1.00491 0.80062 0.98412 0.93305 0.92083 0.91663 0.90021 0.92864 0.91836 0.93264 0.92872 0.92519 0.86432 0.86699 0.74427 0.87508 0.88179 0.89377 0.88003 0.92242 0.91652 0.91036 0.96872 0.96338 0.79113 0.94017 0.92030 0.89318 0.89142 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.95 71.98 0.64 -0.67 16 2 C -0.09 -0.91 2.92 -10.79 -0.03 -0.95 16 3 C -0.15 -1.54 9.19 71.98 0.66 -0.88 16 4 C -0.10 -1.33 3.97 30.60 0.12 -1.21 16 5 C -0.13 -1.53 5.45 29.85 0.16 -1.37 16 6 C 0.51 9.77 7.83 87.66 0.69 10.45 16 7 O -0.58 -15.97 15.98 -3.03 -0.05 -16.02 16 8 N -0.72 -12.57 5.53 -466.78 -2.58 -15.15 16 9 C 0.10 1.87 4.50 85.63 0.39 2.26 16 10 C 0.51 11.07 7.77 87.66 0.68 11.75 16 11 O -0.57 -14.78 15.08 -3.02 -0.05 -14.82 16 12 N -0.60 -12.38 2.97 -817.97 -2.43 -14.81 16 13 C 0.11 2.18 6.37 86.51 0.55 2.73 16 14 C -0.12 -3.26 5.26 30.82 0.16 -3.10 16 15 C -0.08 -2.41 2.19 -10.77 -0.02 -2.43 16 16 C 0.16 5.96 5.65 86.38 0.49 6.45 16 17 N -0.74 -36.58 5.32 -343.45 -1.83 -38.41 16 18 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 19 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 22 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 C -0.12 -2.59 5.36 30.69 0.16 -2.43 16 27 C 0.12 2.33 6.43 86.38 0.56 2.88 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.45 6.57 -2.39 -0.02 0.44 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.93 6.57 -2.39 -0.02 0.91 16 39 H 0.42 6.44 7.44 -92.71 -0.69 5.75 16 40 H 0.11 1.86 7.93 -2.39 -0.02 1.84 16 41 H 0.10 1.92 7.70 -2.39 -0.02 1.90 16 42 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.10 1.72 5.93 -2.39 -0.01 1.70 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 2.13 7.15 -2.39 -0.02 2.11 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.38 19.42 6.84 -92.71 -0.63 18.79 16 50 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.09 1.90 7.01 -2.39 -0.02 1.88 16 54 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.17 423.74 1.46 -69.71 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.44 Total: 32.40 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.52 Total: 7.05 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.55 Total: -126.25 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.09 Total: -30.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.17 1.46 -69.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206614704.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.227 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds