Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99747 * 2 1 4 4 N 1.34773 * 120.00507 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00389 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47374 * 303.71070 * 5 4 2 7 7 C 1.50697 * 109.47349 * 183.70565 * 5 4 2 8 8 O 1.21283 * 119.99970 * 221.76429 * 7 5 4 9 9 N 1.34784 * 119.99763 * 41.76097 * 7 5 4 10 10 C 1.46924 * 120.63044 * 5.27426 * 9 7 5 11 11 C 1.53622 * 108.54202 * 126.36276 * 10 9 7 12 12 C 1.53041 * 109.24221 * 54.85563 * 11 10 9 13 13 C 1.53001 * 109.46175 * 178.48436 * 12 11 10 14 14 N 1.46492 * 109.47451 * 295.06876 * 13 12 11 15 15 C 1.36940 * 120.00220 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00206 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00230 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99930 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47076 * 89.99493 * 19 17 15 21 21 H 1.48504 * 109.46891 * 209.99542 * 19 17 15 22 22 H 1.48500 * 109.46591 * 329.99276 * 19 17 15 23 23 C 1.53040 * 109.54041 * 298.50946 * 12 11 10 24 24 C 1.46927 * 120.62757 * 185.54622 * 9 7 5 25 25 C 1.52998 * 109.46692 * 63.70682 * 5 4 2 26 26 C 1.53003 * 109.47151 * 65.23879 * 25 5 4 27 27 C 1.52999 * 109.47022 * 185.23622 * 25 5 4 28 28 H 1.09003 * 109.46785 * 239.99762 * 1 2 3 29 29 H 1.08993 * 109.47552 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46841 * 120.00258 * 1 2 3 31 31 H 0.97005 * 119.99772 * 0.02562 * 4 2 1 32 32 H 1.08990 * 109.47024 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46480 * 299.99825 * 6 5 4 34 34 H 1.09000 * 109.46928 * 59.99432 * 6 5 4 35 35 H 1.08993 * 109.58130 * 246.19794 * 10 9 7 36 36 H 1.08995 * 109.58911 * 6.62404 * 10 9 7 37 37 H 1.08999 * 109.63955 * 294.86288 * 11 10 9 38 38 H 1.09002 * 109.45939 * 174.73543 * 11 10 9 39 39 H 1.09007 * 109.44722 * 58.52396 * 12 11 10 40 40 H 1.09000 * 109.46351 * 55.07223 * 13 12 11 41 41 H 1.08997 * 109.47380 * 175.06413 * 13 12 11 42 42 H 0.97005 * 119.99743 * 0.02562 * 14 13 12 43 43 H 0.96994 * 119.99586 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.49312 * 301.41441 * 23 12 11 45 45 H 1.08996 * 109.52545 * 181.33146 * 23 12 11 46 46 H 1.09001 * 109.58772 * 353.37616 * 24 9 7 47 47 H 1.08999 * 109.58322 * 113.65984 * 24 9 7 48 48 H 1.09004 * 109.47699 * 305.23892 * 25 5 4 49 49 H 1.08995 * 109.47381 * 60.00027 * 26 25 5 50 50 H 1.09005 * 109.47078 * 180.02562 * 26 25 5 51 51 H 1.09001 * 109.46915 * 299.99531 * 26 25 5 52 52 H 1.09003 * 109.47045 * 53.78184 * 27 25 5 53 53 H 1.09002 * 109.46824 * 173.78071 * 27 25 5 54 54 H 1.08999 * 109.47165 * 293.77841 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1556 -0.3673 -1.2007 7 6 4.1484 -2.5849 -0.0911 8 8 5.0894 -2.9396 0.5868 9 7 3.5518 -3.4589 -0.9259 10 6 2.4872 -3.0166 -1.8368 11 6 2.8616 -3.4365 -3.2663 12 6 3.1279 -4.9432 -3.2960 13 6 3.4645 -5.3733 -4.7252 14 7 2.2964 -5.1678 -5.5850 15 6 2.3616 -5.4836 -6.9159 16 1 3.2741 -5.8847 -7.3315 17 6 1.2546 -5.2893 -7.7304 18 7 1.3171 -5.5934 -9.0095 19 14 -0.3241 -4.5963 -7.0112 20 1 -0.3033 -3.1146 -7.1077 21 1 -1.4870 -5.1254 -7.7683 22 1 -0.4369 -4.9982 -5.5861 23 6 4.3039 -5.2734 -2.3739 24 6 3.9497 -4.8732 -0.9382 25 6 4.1564 -0.5272 1.2926 26 6 3.7572 -1.3986 2.4852 27 6 5.6806 -0.4083 1.2355 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 5.2455 -0.3669 -1.2008 33 1 3.7919 -0.8232 -2.1216 34 1 3.7922 0.6582 -1.1348 35 1 1.5446 -3.4833 -1.5509 36 1 2.3904 -1.9321 -1.7865 37 1 3.7577 -2.9024 -3.5822 38 1 2.0395 -3.1991 -3.9416 39 1 2.2394 -5.4756 -2.9563 40 1 4.2985 -4.7780 -5.0968 41 1 3.7396 -6.4280 -4.7321 42 1 1.4768 -4.8072 -5.2117 43 1 0.5436 -5.4573 -9.5787 44 1 5.1864 -4.7219 -2.6981 45 1 4.5085 -6.3433 -2.4133 46 1 4.8183 -5.0140 -0.2948 47 1 3.1248 -5.4880 -0.5781 48 1 3.7184 0.4647 1.4047 49 1 4.1951 -2.3904 2.3733 50 1 4.1204 -0.9425 3.4062 51 1 2.6712 -1.4833 2.5259 52 1 5.9702 0.1185 0.3262 53 1 6.0346 0.1459 2.1048 54 1 6.1230 -1.4044 1.2349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206961540.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -71.937885 kcal Electronic energy + Delta-G solvation = -32388.153223 eV Core-core repulsion = 28359.790166 eV Total energy + Delta-G solvation = -4028.363057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52960 -40.39565 -39.27558 -37.18928 -36.83201 -34.99173 -34.07288 -32.81986 -32.11055 -31.54455 -29.91134 -28.68190 -27.74093 -25.99133 -24.76132 -24.55440 -23.32491 -22.45046 -21.64649 -20.74269 -20.02198 -19.59087 -18.70161 -17.77884 -16.99300 -16.63051 -16.59067 -16.31645 -16.20118 -15.90246 -15.56553 -15.35454 -15.09050 -15.05025 -14.82345 -14.57704 -14.29390 -14.27888 -14.08809 -13.77023 -13.68537 -13.30302 -13.28043 -13.21142 -13.08734 -12.97397 -12.78972 -12.78022 -12.69422 -12.29682 -12.17463 -12.12947 -11.90891 -11.87037 -11.83121 -11.67963 -11.44598 -11.39072 -11.03364 -10.95645 -10.33128 -10.00466 -9.68929 -9.28391 -8.01583 -5.35715 1.29832 1.37969 1.44603 1.52063 1.64917 1.84537 2.20622 2.50705 3.19705 3.29797 3.57092 3.60575 3.74004 3.80865 3.85527 3.93360 4.04870 4.15647 4.18499 4.32189 4.35138 4.41329 4.48934 4.54568 4.57844 4.60639 4.67361 4.70950 4.77416 4.79112 4.82864 4.85030 4.91809 4.93408 4.98228 5.02046 5.08785 5.11583 5.12167 5.14561 5.20056 5.23370 5.29053 5.37764 5.48416 5.52165 5.60983 5.76471 6.22082 6.28072 6.47563 7.01702 7.09705 7.22570 7.84759 8.06262 9.20330 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.003246 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.301817 B = 8623.581672 C = 9849.329779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.574 6.574 4 N -0.717 5.717 5 C 0.173 3.827 6 C -0.168 4.168 7 C 0.522 3.478 8 O -0.545 6.545 9 N -0.601 5.601 10 C 0.086 3.914 11 C -0.125 4.125 12 C -0.085 4.085 13 C 0.159 3.841 14 N -0.753 5.753 15 C -0.238 4.238 16 H 0.049 0.951 17 C -0.069 4.069 18 N -0.988 5.988 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.241 1.241 23 C -0.118 4.118 24 C 0.115 3.885 25 C -0.085 4.085 26 C -0.147 4.147 27 C -0.157 4.157 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.013 0.987 41 H 0.021 0.979 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.052 0.948 53 H 0.057 0.943 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 8.895 26.765 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.454 6.454 4 N -0.374 5.374 5 C 0.083 3.917 6 C -0.226 4.226 7 C 0.309 3.691 8 O -0.423 6.423 9 N -0.334 5.334 10 C -0.036 4.036 11 C -0.164 4.164 12 C -0.104 4.104 13 C 0.033 3.967 14 N -0.399 5.399 15 C -0.369 4.369 16 H 0.067 0.933 17 C -0.260 4.260 18 N -0.639 5.639 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.165 1.165 23 C -0.157 4.157 24 C -0.006 4.006 25 C -0.104 4.104 26 C -0.204 4.204 27 C -0.215 4.215 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.031 0.969 41 H 0.039 0.961 42 H 0.203 0.797 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.071 0.929 53 H 0.076 0.924 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.190 9.339 26.953 28.526 hybrid contribution -0.713 -0.168 -0.761 1.056 sum -0.903 9.171 26.192 27.766 Atomic orbital electron populations 1.21995 0.88247 1.06294 1.06512 1.21498 0.91989 0.82545 0.73913 1.90671 1.71494 1.32770 1.50438 1.46437 1.05268 1.10086 1.75593 1.20425 0.81386 0.91956 0.97893 1.22374 1.02171 1.02255 0.95794 1.20571 0.82734 0.86640 0.79134 1.90612 1.28310 1.78214 1.45123 1.48267 1.37816 1.09410 1.37878 1.22581 0.90441 1.02499 0.88050 1.21969 1.02131 0.95693 0.96567 1.21251 0.99478 0.96235 0.93458 1.20801 0.88821 0.97333 0.89789 1.42643 1.12759 1.78859 1.05666 1.19025 0.98088 1.34417 0.85369 0.93323 1.25626 1.02104 1.02538 0.95718 1.69912 1.31552 1.56339 1.06053 0.85347 0.78587 0.78379 0.79140 1.20101 1.22549 1.16487 1.21814 0.97339 1.02456 0.94058 1.21679 1.01993 0.80222 0.96755 1.21216 0.96921 0.99568 0.92723 1.21904 1.00938 1.00370 0.97165 1.22125 0.94566 1.03245 1.01528 0.87076 0.89140 0.87105 0.74549 0.91099 0.91505 0.89647 0.88022 0.87310 0.92692 0.90973 0.89685 0.96886 0.96075 0.79722 0.93360 0.92661 0.89465 0.89606 0.89019 0.90254 0.92098 0.92362 0.92593 0.92867 0.92388 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.32 71.24 0.74 -0.51 16 2 C 0.51 7.81 7.34 87.66 0.64 8.45 16 3 O -0.57 -13.65 13.29 -3.04 -0.04 -13.69 16 4 N -0.72 -9.55 2.62 -426.33 -1.12 -10.66 16 5 C 0.17 3.18 0.12 2.86 0.00 3.18 16 6 C -0.17 -3.44 7.57 71.98 0.55 -2.89 16 7 C 0.52 10.56 5.79 87.65 0.51 11.07 16 8 O -0.55 -13.83 11.19 -3.04 -0.03 -13.87 16 9 N -0.60 -10.28 2.91 -818.08 -2.38 -12.66 16 10 C 0.09 1.28 4.25 86.51 0.37 1.65 16 11 C -0.13 -2.75 5.26 30.82 0.16 -2.59 16 12 C -0.09 -2.04 2.19 -10.77 -0.02 -2.07 16 13 C 0.16 5.61 5.65 86.38 0.49 6.10 16 14 N -0.75 -33.11 5.12 -343.47 -1.76 -34.87 16 15 C -0.24 -13.39 10.47 84.03 0.88 -12.51 16 16 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 18 N -0.99 -62.99 13.97 21.65 0.30 -62.69 16 19 Si 0.96 43.02 27.74 68.60 1.90 44.93 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.24 -9.24 6.52 99.48 0.65 -8.59 16 23 C -0.12 -2.36 5.36 30.67 0.16 -2.19 16 24 C 0.12 1.94 6.44 86.36 0.56 2.50 16 25 C -0.08 -1.69 2.18 -10.79 -0.02 -1.72 16 26 C -0.15 -2.67 8.71 71.98 0.63 -2.04 16 27 C -0.16 -3.29 8.56 71.98 0.62 -2.67 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.42 3.62 6.52 -92.70 -0.60 3.02 16 32 H 0.07 1.49 6.20 -2.39 -0.01 1.47 16 33 H 0.07 1.32 6.29 -2.39 -0.02 1.30 16 34 H 0.08 1.98 5.91 -2.39 -0.01 1.96 16 35 H 0.10 0.97 7.99 -2.39 -0.02 0.95 16 36 H 0.11 1.53 3.54 -2.39 -0.01 1.52 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.75 7.15 -2.39 -0.02 1.74 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.37 14.83 4.70 -92.70 -0.44 14.40 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.09 1.63 7.00 -2.39 -0.02 1.62 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.81 6.33 -2.38 -0.02 1.80 16 49 H 0.06 1.28 5.77 -2.39 -0.01 1.27 16 50 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.06 0.88 7.76 -2.39 -0.02 0.86 16 52 H 0.05 1.10 5.99 -2.39 -0.01 1.08 16 53 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.07 1.76 5.57 -2.39 -0.01 1.75 16 Total: -1.00 -74.95 394.04 3.40 -71.55 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.19 Total: 31.73 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.71 Total: 0.25 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -4.95 Total: -120.89 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.07 Total: -27.56 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.90 Total: 44.93 kcal Total: -74.95 3.40 -71.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206961540.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.392 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds