Wall clock time and date at job start Sat Apr 11 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46613 * 2 1 4 4 C 1.53002 * 109.47139 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46968 * 300.00046 * 4 3 2 6 6 C 1.52996 * 109.47064 * 59.99732 * 4 3 2 7 7 C 1.50701 * 109.47380 * 180.02562 * 4 3 2 8 8 O 1.21278 * 120.00010 * 359.97438 * 7 4 3 9 9 N 1.34772 * 119.99841 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00029 * 180.02562 * 9 7 4 11 11 H 1.09005 * 110.64677 * 34.28979 * 10 9 7 12 12 C 1.54938 * 110.72128 * 271.14484 * 10 9 7 13 13 N 1.48533 * 103.22808 * 204.22195 * 12 10 9 14 14 C 1.46900 * 111.00013 * 159.71798 * 13 12 10 15 15 C 1.50698 * 109.47301 * 183.58802 * 14 13 12 16 16 O 1.21289 * 120.00013 * 354.04109 * 15 14 13 17 17 N 1.34774 * 120.00051 * 174.03536 * 15 14 13 18 18 C 1.37101 * 119.99950 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00119 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99897 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99613 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00074 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47701 * 89.99543 * 22 20 18 24 24 H 1.48507 * 109.47058 * 209.99667 * 22 20 18 25 25 H 1.48501 * 109.47083 * 329.99051 * 22 20 18 26 26 C 1.47907 * 105.81784 * 39.20953 * 13 12 10 27 27 C 1.54296 * 107.08451 * 334.51848 * 26 13 12 28 28 H 1.08996 * 110.28541 * 120.26804 * 27 26 13 29 29 C 1.52996 * 110.48045 * 242.53301 * 27 26 13 30 30 H 1.08997 * 109.47728 * 299.99527 * 1 2 3 31 31 H 1.08995 * 109.47609 * 60.00432 * 1 2 3 32 32 H 1.09005 * 109.46615 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46935 * 119.99811 * 2 1 3 34 34 H 1.08994 * 109.47201 * 239.99960 * 2 1 3 35 35 H 1.08999 * 109.47316 * 299.99578 * 3 2 1 36 36 H 1.09003 * 109.47497 * 60.00139 * 3 2 1 37 37 H 1.09005 * 109.47567 * 59.99799 * 5 4 3 38 38 H 1.08997 * 109.47376 * 179.97438 * 5 4 3 39 39 H 1.09005 * 109.47585 * 299.99763 * 5 4 3 40 40 H 1.09003 * 109.46915 * 60.00067 * 6 4 3 41 41 H 1.08999 * 109.47486 * 179.97438 * 6 4 3 42 42 H 1.09003 * 109.47683 * 300.00259 * 6 4 3 43 43 H 0.96997 * 120.00156 * 359.97438 * 9 7 4 44 44 H 1.08999 * 110.66904 * 322.66397 * 12 10 9 45 45 H 1.09001 * 110.66959 * 85.62362 * 12 10 9 46 46 H 1.08999 * 109.47306 * 303.58923 * 14 13 12 47 47 H 1.08999 * 109.47065 * 63.58490 * 14 13 12 48 48 H 0.96993 * 120.00374 * 0.02562 * 17 15 14 49 49 H 0.97003 * 119.99475 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.91880 * 94.01777 * 26 13 12 51 51 H 1.08992 * 109.91710 * 215.11884 * 26 13 12 52 52 H 1.08998 * 109.47520 * 175.62826 * 29 27 26 53 53 H 1.08992 * 109.47320 * 295.64012 * 29 27 26 54 54 H 1.09007 * 109.46721 * 55.63381 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0794 0.7216 1.2502 6 6 4.0805 0.7212 -1.2482 7 6 4.0722 2.8635 0.0013 8 8 3.2840 3.7853 0.0008 9 7 5.3972 3.1098 0.0014 10 6 5.8855 4.4910 0.0026 11 1 5.2191 5.1338 0.5779 12 6 6.0408 5.0188 -1.4458 13 7 7.0540 6.0962 -1.3082 14 6 7.6859 6.3929 -2.6007 15 6 8.7664 7.4252 -2.4065 16 8 8.9168 7.9492 -1.3230 17 7 9.5658 7.7661 -3.4366 18 6 10.5486 8.7056 -3.2600 19 1 10.6824 9.1723 -2.2952 20 6 11.3730 9.0566 -4.3220 21 7 12.3147 9.9575 -4.1527 22 14 11.1420 8.2490 -5.9903 23 1 10.1818 9.0444 -6.7968 24 1 12.4477 8.1866 -6.6952 25 1 10.6132 6.8737 -5.8056 26 6 8.0481 5.5929 -0.3355 27 6 7.3269 4.5614 0.5570 28 1 7.8110 3.5881 0.4766 29 6 7.3134 5.0301 2.0134 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.7161 -0.3061 1.2503 38 1 5.1694 0.7213 1.2505 39 1 3.7157 1.2355 2.1400 40 1 3.7174 1.2349 -2.1384 41 1 5.1705 0.7217 -1.2480 42 1 3.7172 -0.3065 -1.2483 43 1 6.0276 2.3726 0.0014 44 1 6.4042 4.2309 -2.1055 45 1 5.0961 5.4203 -1.8124 46 1 8.1230 5.4818 -3.0092 47 1 6.9359 6.7775 -3.2919 48 1 9.4454 7.3473 -4.3032 49 1 12.8905 10.2023 -4.8940 50 1 8.8752 5.1171 -0.8623 51 1 8.4207 6.4160 0.2742 52 1 6.7343 4.3298 2.6152 53 1 8.3351 5.0748 2.3902 54 1 6.8609 6.0201 2.0722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208466482.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:38 Heat of formation + Delta-G solvation = -109.503895 kcal Electronic energy + Delta-G solvation = -30430.485522 eV Core-core repulsion = 26400.493480 eV Total energy + Delta-G solvation = -4029.992042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59610 -40.68567 -39.42239 -37.54780 -36.13044 -35.51060 -34.01699 -33.70975 -33.09624 -30.25617 -28.52165 -28.23550 -27.39401 -26.92536 -25.66474 -24.33824 -22.57045 -21.80445 -21.60075 -21.23065 -20.20161 -19.76548 -17.81338 -17.76526 -17.62344 -16.75977 -16.65573 -16.34751 -16.18198 -15.81289 -15.53598 -15.34623 -15.07310 -14.86271 -14.75630 -14.65232 -14.36568 -14.01369 -13.92962 -13.79863 -13.69769 -13.52947 -13.31899 -13.09367 -13.01903 -12.96918 -12.68500 -12.57884 -12.47495 -12.41668 -12.23048 -11.98599 -11.93761 -11.90183 -11.81394 -11.67402 -11.52863 -11.49699 -11.30250 -10.62751 -10.43229 -10.25283 -10.08600 -9.36783 -8.42009 -6.02799 1.28721 1.34741 1.43194 1.64818 1.93157 2.04981 2.22006 2.70148 3.13365 3.17844 3.46840 3.59746 3.66736 3.76305 3.86876 3.91779 4.09633 4.20034 4.24461 4.29591 4.30109 4.33946 4.36923 4.44434 4.50865 4.58957 4.62628 4.76749 4.79702 4.81702 4.84182 4.89421 4.94275 4.97535 4.97969 5.05142 5.09082 5.11959 5.16328 5.24920 5.26058 5.32060 5.38352 5.45533 5.49584 5.51620 5.55033 5.84636 5.92392 5.99714 6.56068 6.58586 6.87143 7.27469 7.38042 7.94812 8.75531 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002090 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.540089 B =13391.130985 C =14138.514610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.075 4.075 5 C -0.141 4.141 6 C -0.141 4.141 7 C 0.519 3.481 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.154 3.846 11 H 0.079 0.921 12 C 0.032 3.968 13 N -0.516 5.516 14 C 0.046 3.954 15 C 0.450 3.550 16 O -0.604 6.604 17 N -0.591 5.591 18 C -0.327 4.327 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.231 1.231 26 C 0.050 3.950 27 C -0.094 4.094 28 H 0.108 0.892 29 C -0.137 4.137 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.415 0.585 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.040 0.960 51 H 0.062 0.938 52 H 0.071 0.929 53 H 0.063 0.937 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 -29.457 5.117 35.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.079 4.079 5 C -0.198 4.198 6 C -0.198 4.198 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.356 5.356 10 C 0.048 3.952 11 H 0.097 0.903 12 C -0.097 4.097 13 N -0.241 5.241 14 C -0.085 4.085 15 C 0.238 3.762 16 O -0.488 6.488 17 N -0.233 5.233 18 C -0.456 4.456 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.078 4.078 27 C -0.113 4.113 28 H 0.126 0.874 29 C -0.195 4.195 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.133 0.867 48 H 0.224 0.776 49 H 0.089 0.911 50 H 0.058 0.942 51 H 0.080 0.920 52 H 0.090 0.910 53 H 0.082 0.918 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.950 -27.833 5.955 34.194 hybrid contribution 1.016 -0.040 -1.207 1.578 sum -17.934 -27.872 4.749 33.482 Atomic orbital electron populations 1.21790 0.96069 1.02022 1.01417 1.21654 0.95732 0.95146 1.03304 1.21407 0.92368 0.97847 1.01583 1.20829 0.97073 0.90198 0.99750 1.21950 1.02075 1.01389 0.94400 1.21950 1.02023 1.01407 0.94457 1.21275 0.81981 0.92124 0.73941 1.90704 1.56481 1.48043 1.51001 1.45869 1.07193 1.07775 1.74804 1.21651 0.94992 0.83408 0.95149 0.90321 1.23582 0.95874 0.92717 0.97540 1.64391 1.12986 1.39045 1.07715 1.22053 0.95799 0.97458 0.93190 1.20766 0.84639 0.86430 0.84370 1.90542 1.73181 1.57830 1.27228 1.42018 1.30972 1.38364 1.11908 1.18993 1.10273 1.17524 0.98837 0.92627 1.26101 0.94813 0.97074 1.03341 1.69807 1.20384 1.32674 1.34544 0.85375 0.79150 0.80142 0.76919 1.18321 1.19899 1.15472 1.22904 0.93515 0.96846 0.94529 1.22274 0.93644 0.99585 0.95809 0.87374 1.21769 1.02414 1.01022 0.94283 0.93351 0.93381 0.91633 0.90433 0.90480 0.93246 0.93230 0.89142 0.90631 0.93151 0.93162 0.90700 0.89129 0.74705 0.91403 0.90641 0.89963 0.86654 0.77566 0.91148 0.94196 0.91957 0.90966 0.91823 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.10 5.23 30.59 0.16 -0.94 16 3 C -0.09 -1.38 3.56 30.59 0.11 -1.27 16 4 C -0.08 -0.91 0.64 -52.93 -0.03 -0.95 16 5 C -0.14 -1.08 8.02 71.98 0.58 -0.51 16 6 C -0.14 -1.12 8.02 71.98 0.58 -0.54 16 7 C 0.52 10.18 6.48 87.66 0.57 10.75 16 8 O -0.58 -17.39 15.67 -3.02 -0.05 -17.44 16 9 N -0.70 -11.11 4.98 -436.83 -2.17 -13.28 16 10 C 0.15 3.41 2.92 46.20 0.13 3.55 16 11 H 0.08 2.22 7.34 -2.38 -0.02 2.20 16 12 C 0.03 0.77 6.24 86.65 0.54 1.31 16 13 N -0.52 -16.56 5.12 -886.95 -4.54 -21.10 16 14 C 0.05 1.50 5.30 85.56 0.45 1.95 16 15 C 0.45 20.68 7.39 87.66 0.65 21.33 16 16 O -0.60 -33.69 14.10 -3.06 -0.04 -33.73 16 17 N -0.59 -28.11 5.09 -306.99 -1.56 -29.67 16 18 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 19 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 21 N -0.93 -56.43 13.96 21.66 0.30 -56.12 16 22 Si 0.96 38.85 27.74 68.60 1.90 40.75 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 26 C 0.05 1.55 5.06 86.55 0.44 1.99 16 27 C -0.09 -1.98 3.33 -9.81 -0.03 -2.01 16 28 H 0.11 1.61 7.73 -2.39 -0.02 1.59 16 29 C -0.14 -2.90 8.90 71.98 0.64 -2.25 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.08 0.52 6.43 -2.39 -0.02 0.51 16 34 H 0.08 0.53 6.43 -2.39 -0.02 0.52 16 35 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.09 0.39 6.43 -2.38 -0.02 0.37 16 38 H 0.07 0.36 7.56 -2.39 -0.02 0.34 16 39 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.38 7.56 -2.39 -0.02 0.36 16 42 H 0.09 0.41 6.43 -2.39 -0.02 0.40 16 43 H 0.41 3.77 7.19 -92.71 -0.67 3.11 16 44 H 0.07 1.36 7.95 -2.39 -0.02 1.34 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 47 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 49 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.04 1.23 7.71 -2.39 -0.02 1.21 16 51 H 0.06 2.44 6.58 -2.39 -0.02 2.43 16 52 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 54 H 0.04 1.08 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -81.78 416.47 0.28 -81.50 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.37 Total: 36.28 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.81 Total: 12.81 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -7.97 Total: -120.17 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.09 Total: -51.17 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.75 kcal Total: -81.78 0.28 -81.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208466482.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.007 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds