Wall clock time and date at job start Sat Apr 11 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47582 * 2 1 4 4 C 1.53004 * 109.47127 * 65.00133 * 3 2 1 5 5 C 1.52993 * 109.47008 * 185.28907 * 4 3 2 6 6 C 1.52995 * 109.47288 * 185.00273 * 3 2 1 7 7 C 1.50702 * 109.47462 * 67.20784 * 6 3 2 8 8 O 1.21287 * 119.99510 * 356.43643 * 7 6 3 9 9 N 1.34775 * 120.00719 * 176.43982 * 7 6 3 10 10 C 1.46928 * 120.62457 * 0.02562 * 9 7 6 11 11 C 1.53192 * 108.77226 * 126.37199 * 10 9 7 12 12 C 1.53044 * 109.31512 * 54.63377 * 11 10 9 13 13 C 1.53042 * 109.53453 * 298.63340 * 12 11 10 14 14 H 1.08996 * 109.52839 * 301.39644 * 13 12 11 15 15 N 1.46898 * 109.49307 * 181.31169 * 13 12 11 16 16 C 1.46903 * 110.99942 * 85.16533 * 15 13 12 17 17 C 1.50699 * 109.47405 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99895 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00023 * 180.02562 * 17 16 15 20 20 C 1.37090 * 119.99843 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00323 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99879 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99951 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00210 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47302 * 89.99294 * 24 22 20 26 26 H 1.48495 * 109.47264 * 210.00024 * 24 22 20 27 27 H 1.48505 * 109.46671 * 329.99899 * 24 22 20 28 28 C 1.46924 * 120.63326 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47404 * 59.99390 * 1 2 3 30 30 H 1.08995 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46621 * 299.99933 * 1 2 3 32 32 H 1.09009 * 109.46990 * 239.99913 * 2 1 3 33 33 H 1.08998 * 109.47404 * 120.00610 * 2 1 3 34 34 H 1.08999 * 109.47259 * 305.00552 * 3 2 1 35 35 H 1.09000 * 109.46902 * 305.28879 * 4 3 2 36 36 H 1.09002 * 109.46602 * 65.28597 * 4 3 2 37 37 H 1.09000 * 109.47104 * 174.73807 * 5 4 3 38 38 H 1.08997 * 109.47584 * 294.73289 * 5 4 3 39 39 H 1.08994 * 109.47579 * 54.73812 * 5 4 3 40 40 H 1.09000 * 109.47342 * 307.20385 * 6 3 2 41 41 H 1.09001 * 109.47481 * 187.20652 * 6 3 2 42 42 H 1.08997 * 109.58609 * 246.15531 * 10 9 7 43 43 H 1.08995 * 109.58919 * 6.44490 * 10 9 7 44 44 H 1.09001 * 109.49640 * 174.58653 * 11 10 9 45 45 H 1.08997 * 109.49917 * 294.64759 * 11 10 9 46 46 H 1.08998 * 109.45865 * 178.61475 * 12 11 10 47 47 H 1.08996 * 109.45879 * 58.65259 * 12 11 10 48 48 H 1.00904 * 111.00249 * 209.11614 * 15 13 12 49 49 H 1.08999 * 109.46923 * 299.99847 * 16 15 13 50 50 H 1.09004 * 109.47122 * 59.99351 * 16 15 13 51 51 H 0.97001 * 119.99608 * 359.97438 * 19 17 16 52 52 H 0.97004 * 119.99948 * 180.02562 * 23 22 20 53 53 H 1.08995 * 109.58573 * 113.83965 * 28 9 7 54 54 H 1.08994 * 109.58477 * 353.41394 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0291 3.6039 1.2530 6 6 3.5649 1.4442 -0.1258 7 6 3.9572 0.9327 -1.4880 8 8 3.1053 0.5389 -2.2563 9 7 5.2546 0.9127 -1.8525 10 6 6.2979 1.3859 -0.9325 11 6 7.3542 0.2872 -0.7780 12 6 7.8712 -0.1160 -2.1609 13 6 6.7160 -0.6708 -2.9974 14 1 6.2767 -1.5286 -2.4883 15 7 7.2192 -1.0865 -4.3134 16 6 7.7527 -2.4544 -4.2649 17 6 8.2579 -2.8454 -5.6298 18 8 8.1806 -2.0618 -6.5524 19 7 8.7945 -4.0661 -5.8256 20 6 9.2536 -4.4219 -7.0674 21 1 9.1848 -3.7241 -7.8889 22 6 9.8074 -5.6802 -7.2691 23 7 10.2479 -6.0211 -8.4593 24 14 9.9257 -6.8873 -5.8484 25 1 8.6919 -7.7120 -5.7955 26 1 11.1032 -7.7702 -6.0458 27 1 10.0760 -6.1391 -4.5745 28 6 5.6524 0.4175 -3.1773 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6054 1.9815 -0.8417 35 1 0.5571 2.0426 1.4427 36 1 2.1449 1.6451 2.1421 37 1 1.6584 4.1117 2.1434 38 1 3.1150 3.6893 1.2118 39 1 1.5946 4.0634 0.3653 40 1 3.9935 0.7997 0.6417 41 1 3.9389 2.4599 0.0024 42 1 6.7623 2.2848 -1.3379 43 1 5.8553 1.6092 0.0382 44 1 8.1818 0.6605 -0.1747 45 1 6.9092 -0.5791 -0.2887 46 1 8.6407 -0.8803 -2.0522 47 1 8.2940 0.7565 -2.6590 48 1 6.5016 -1.0031 -5.0178 49 1 8.5719 -2.4997 -3.5472 50 1 6.9636 -3.1416 -3.9593 51 1 8.8559 -4.6928 -5.0878 52 1 10.6341 -6.8997 -8.6003 53 1 6.0642 1.2376 -3.7654 54 1 4.7844 -0.0006 -3.6869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210350372.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:05 Heat of formation + Delta-G solvation = -114.716755 kcal Electronic energy + Delta-G solvation = -30029.370328 eV Core-core repulsion = 25999.152239 eV Total energy + Delta-G solvation = -4030.218088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44289 -40.37020 -39.13022 -37.57916 -36.41557 -35.82466 -33.78155 -33.25803 -32.58037 -31.83009 -30.36550 -28.05192 -26.81743 -25.89106 -24.98544 -23.51805 -23.46344 -21.68194 -21.34309 -20.75284 -20.32874 -19.80063 -18.30445 -17.79916 -17.23946 -16.93972 -16.62462 -16.43632 -16.05227 -15.58484 -15.53561 -15.34781 -15.26037 -15.14159 -14.82478 -14.71848 -14.39934 -14.22052 -14.15094 -14.04953 -13.77161 -13.45803 -13.37397 -13.26572 -12.95730 -12.85340 -12.67305 -12.43638 -12.37212 -12.30202 -12.02362 -11.99047 -11.82498 -11.80534 -11.63324 -11.53805 -11.43948 -11.34662 -11.20889 -10.61179 -10.47329 -10.27456 -9.68932 -9.41520 -8.43083 -6.04325 1.28608 1.34051 1.43187 1.64348 1.91226 1.93161 2.21430 2.71393 3.12837 3.31434 3.53037 3.76165 3.84694 3.88627 3.94356 4.04577 4.09424 4.15296 4.17960 4.26716 4.36558 4.41205 4.47645 4.48548 4.51725 4.56987 4.63587 4.66553 4.69251 4.77911 4.79321 4.86779 4.95934 4.99029 5.00813 5.10612 5.13573 5.17036 5.21171 5.29621 5.31960 5.38519 5.48644 5.50205 5.51837 5.56741 5.59747 5.87474 5.99945 6.26314 6.44280 6.57049 6.85328 7.20480 7.36546 7.92798 8.74484 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.001970 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.293958 B =14210.166096 C =14733.690391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.069 4.069 4 C -0.116 4.116 5 C -0.156 4.156 6 C -0.129 4.129 7 C 0.505 3.495 8 O -0.583 6.583 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.082 3.918 14 H 0.046 0.954 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.448 3.552 18 O -0.613 6.613 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.231 1.231 28 C 0.115 3.885 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.343 0.657 49 H 0.116 0.884 50 H 0.071 0.929 51 H 0.390 0.610 52 H 0.280 0.720 53 H 0.074 0.926 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 15.818 31.690 37.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.088 4.088 4 C -0.153 4.153 5 C -0.213 4.213 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.463 6.463 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.028 4.028 14 H 0.064 0.936 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.231 5.231 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.154 1.154 28 C -0.009 4.009 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.162 0.838 49 H 0.134 0.866 50 H 0.089 0.911 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.092 0.908 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.947 16.303 30.619 37.026 hybrid contribution -0.488 -1.592 -0.732 1.819 sum -13.436 14.711 29.886 35.918 Atomic orbital electron populations 1.21771 0.95822 1.01380 1.01658 1.21646 0.96280 0.96730 1.01600 1.20950 0.93230 0.96202 0.98456 1.21602 1.01749 0.95775 0.96204 1.21855 1.02097 0.95732 1.01646 1.21895 0.97872 1.04447 0.92647 1.21511 0.81328 0.77244 0.90344 1.90677 1.50377 1.49642 1.55618 1.48229 1.06895 1.63180 1.15944 1.22107 0.88374 0.97291 0.94337 1.21915 0.99288 0.99067 0.96249 1.21569 0.96570 1.01424 0.95189 1.21887 0.95042 0.96539 0.89340 0.93613 1.60149 1.40915 1.22972 1.06869 1.21650 1.01246 0.90493 0.93346 1.20918 0.82071 0.81832 0.91569 1.90546 1.60846 1.52187 1.46190 1.42017 1.56284 1.14564 1.10257 1.19010 1.38653 1.00581 0.87696 0.92689 1.26134 0.95603 0.99062 1.00592 1.69805 1.40859 1.22491 1.24189 0.85361 0.79268 0.78328 0.78551 1.18265 1.19819 1.15379 1.21483 0.97049 0.97092 0.85286 0.94105 0.93148 0.91231 0.93315 0.91405 0.92887 0.91560 0.90498 0.92033 0.91551 0.93695 0.86472 0.86409 0.90109 0.86540 0.87781 0.91347 0.91660 0.91551 0.83841 0.86639 0.91099 0.77471 0.91093 0.90818 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.67 71.98 0.70 -1.59 16 2 C -0.13 -2.05 5.20 30.59 0.16 -1.89 16 3 C -0.07 -0.94 1.49 -10.79 -0.02 -0.95 16 4 C -0.12 -0.98 5.27 30.59 0.16 -0.82 16 5 C -0.16 -1.12 9.55 71.98 0.69 -0.43 16 6 C -0.13 -1.40 3.41 29.85 0.10 -1.30 16 7 C 0.51 10.02 7.43 87.66 0.65 10.67 16 8 O -0.58 -17.12 13.42 -3.05 -0.04 -17.16 16 9 N -0.61 -10.58 2.97 -818.86 -2.43 -13.02 16 10 C 0.10 0.92 6.32 86.36 0.55 1.47 16 11 C -0.13 -1.26 6.08 30.67 0.19 -1.07 16 12 C -0.11 -1.90 5.40 30.62 0.17 -1.74 16 13 C 0.08 1.84 2.64 45.01 0.12 1.96 16 14 H 0.05 1.04 7.80 -2.39 -0.02 1.02 16 15 N -0.68 -20.60 5.94 -495.11 -2.94 -23.54 16 16 C 0.07 2.06 5.97 85.56 0.51 2.57 16 17 C 0.45 20.71 7.82 87.66 0.69 21.39 16 18 O -0.61 -34.77 15.78 -3.06 -0.05 -34.82 16 19 N -0.59 -28.29 5.09 -306.99 -1.56 -29.86 16 20 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 21 H 0.05 3.90 7.39 -2.91 -0.02 3.87 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.74 13.96 21.66 0.30 -56.44 16 24 Si 0.97 39.06 27.74 68.60 1.90 40.96 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 28 C 0.11 2.61 5.70 86.37 0.49 3.11 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.81 6.46 -2.39 -0.02 0.79 16 32 H 0.05 1.14 5.96 -2.38 -0.01 1.12 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.99 7.93 -2.39 -0.02 0.97 16 35 H 0.07 0.60 6.33 -2.39 -0.02 0.58 16 36 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 38 H 0.07 0.32 6.68 -2.39 -0.02 0.31 16 39 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.12 0.75 7.85 -2.39 -0.02 0.73 16 41 H 0.12 0.73 6.01 -2.39 -0.01 0.72 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.12 0.36 5.95 -2.39 -0.01 0.35 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 1.18 7.44 -2.39 -0.02 1.17 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.34 11.54 8.06 -89.69 -0.72 10.82 16 49 H 0.12 3.05 7.43 -2.39 -0.02 3.03 16 50 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 51 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 52 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 53 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 54 H 0.07 1.85 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -82.31 413.20 1.23 -81.08 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.42 Total: 40.59 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.47 Total: 12.20 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.63 Total: -122.85 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.09 Total: -51.98 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -82.31 1.23 -81.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210350372.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.634 kcal (2) G-P(sol) polarization free energy of solvation -82.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds